These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1714 fasta sequence [CCGCTCACCACGCGACCGGAACATCATATAAACAGTTGCGAAGTCTATTGAAAATTAATAGAAAAATACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGAACCTCCCGTGGGTGGACGAAAACTCCCGTTCGACCCCTCGCGCCACGTTGTGTTTATCAGCCCGCTACGAATGCGACCAGCAACCCGGCCAGCAGGATGAAATCGGACATCGACTACAGGAACAAGCTCGTGCTGGCCCCGATGGTGCGCGTCGGCACGCTGCCGATGCGGCTGCTGGCCCTCGAGTACGGTGCCGACCTGGTGTACACGGAGGAAATCATCGACTGGAAGCTGCTGCGAGCGGAACGCCACACGAACGAGGTGCTCGGTACGATCGACTACATCGACACCACGGACGGTACGGTCGTGTTTCGTACCTGCCCGGACGAGCGGGGGAAGGTGGTGCTGCAGATTGGGACGGCATCGGCCGAGCGGGCTGTTGCCGTTGGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTGCCCGAAAGACTTTTCCATCAAGGGCGGTATGGGGGTGGCCCTGCTGTACGATCTGCCCCGTGCCAAGGCCATCCTCGAGGGGCTGGTGCAGGGCGTGCGGATACCGGTGACGTGCAAGATCCGGGTCATGCCCGATCTGGACGAAACGGTCGCGCTGGCGAAGGAGCTGCAGTCCACCGGCATACGGGCGATCGGGGTGCACGGGCGCACCAAGATGGAGCGACCGCGCGATCCAGTTAATGAAGGCGCCATTGCCCGGGTAGCAAACGCATTGCACATTCCGGTCATTGCGAACGGTGGCTCACAAAGCATCACCCGCCGGCACGATATACTGCGGTTTGCGCAGCGCTGCTCCACAACGAGCGTGATGGTGGCCCGAGCCGCCGAATGGAACTGTTCCGTGTTCCGGGCGGACGGTCCGCTGCCACTGGACGACGTGATTCGGCGCTATCTGGAGCTGTCCGTCCGGTACGACAACTCGCCCTCGAACACCAAGTACTGCGTGCAGATGATGCTGCGCAGCCTGCAGGAGAGCCCGATCGGGCGCCGTCTCCTGGACAGCCAAACGATGCAGCAGATATGCGATATCTGGGAAATGGGCGAGTACTGTCGGGAAACGCAGCTCCGATACCATTTCGCTGGCATCAAGGGTCGACGCGCCTGTCGGCCACGCACGCAGTCTGGGGACGGTGGTCCGGTAGCGGAAGGCAACGAGCCGACCGCTAGCAAAAAGCGGTGCCTTGAGGAATCGCCGGACTCCGATCCGGAGCCGCTGAACGAGGAAAACGTTTGCTTTATACGGTCCAATTTTATTGACGACAATTCGCTGCCAAAATCCAAACTCTACCTGCACGCGGTACGGAACGGGCTGCCGCGGG-CCAGTACGAGGTGCAGCAGAAGGACAAACTGTTCCGGGCGACCATCCGGTTCGATGGCCAGCGCTACACCAGCTCGTTCTGGGAGAAGAATAAGCGATACGCGGAGCAGGCGGCCGCACTCGTGTGCCTGCTGAAGCGCGGGGTCGAGTCGCGCGACGAGCTGATACGGAATGGTGCGATGCTGCCGGCCAAAAATGGACCGGCCGCCGCTGTGGTGGAGCTGACCGACAGCAGCAAGACAGATGCTCCTGGGGAGAGTGAAACGAAACGGGGAGGCTCGACCGATGGTGGAAAGT] [+] EMBL BM651294 [CCGCTCACCACGCGACCGGAACATCATATAAACAGTTGCGAAGTCTATTGAAAATTAATAGAAAAATACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGAACCTCCCGTGGGTGGACGAAAACTCCCGTTCGACCCCTCGCGCCACGTTGTGTTTATCAGCCCGCTACGAATGCGACCAGCAACCCGGCCAGCAGGATGAAATCGGACATCGACTACAGGAACAAGCTCGTGCTGGCCCCGATGGTGCGCGTCGGCACGCTGCCGATGCGGCTGCTGGCCCTCGAGTACGGTGCCGACCTGGTGTACACGGAGGAAATCATCGACTGGAAGCTGCTGCGAGCGGAACGCCACACGAACGAGGTGCTCGGTACGATCGACTACATCGACACCACGGACGGTACGGTCGTGTTTCGTACCTGCCCGGACGAGCGGGGGAAGGTGGTGCTGCAGATTGGGACGGCATCGGCCGAGCGGGCTGTTGCCGTTGGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTGCCCGAAAGACTTTTCCATCAAGGGCGGTATGGGGGTGGCCCTGCTGTACGATCTGCCCCGTGCCAAGGCCATCCTCGAGGGGCTGGTGCAGGGCGTGCGGATACCGGTGACGTGC ] [+] EMBL BX602251 [ CTCACCACGCGACCGGAACATCATATAAACAGTTGCGAAGTTTATTGAAAATTAATAGAAAAATACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGAACCTCCCGTGGGTGGACGAAAACTCCCGTTCGACCCCTCGCGCCACGTTGTGTTTATCAGCCCGCTACGAATGCGACCAGCAACCCGGCCAGCAGGATGAAATCGGACATCGACTACAGGAACAAGCTCGTGCTGGCCCCGATGGTGCGCGTCGGCACGCTGCCGATGCGGCTGCTGGCCCTCGAGTACGGTGCCGACCTGGTGTACACGGAGGAAATCATCGACTGGAAGCTGCTGCGAGCGGAACGCCACACGAACGAGGTGCTCGGTACGATCGACTACATCGACACCACGGACGGTACGGTCGTGTTTCGTACCTGCCCGGACGAGCGGGGGAAGGTGGTGCTGCAGATTGGGACGGCATCGGCCGAGCGGGCTGTTGCCGTTGGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTGCCCGAAAGACTTTTCCATCAAGGGC ] [+] EMBL BM616906 [ ccgAAACAGTTGCGAAGTCTATTGAAAATTAATAGAAAAATACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGAACCTCCCGTGGGTGGACGAAAACTCCCGTTCGACCCCTCGCGCCACGTTGTGTTTATCAGCCCGCTACGAATGCGACCAGCAACCCGGCCAGCAGGATGAAATCGGACATCGACTACAGGAACAAGCTCGTGCTGGCCCCGATGGTGCGCGTCGGCACGCTGCCGATGCGGCTGCTGGCCCTCGAGTACGGTGCCGACCTGGTGTACACGGAGGAAATCATCGACTGGAAGCTGCTGCGAGCGGAACGCCACACGAACGAGGTGCTCGGTACGATCGACTACATCGACACCACGGACGGTACGGTCGTGTTTCGTACCTGCCCGCACGAGCGGGGGAAGGTGGTGCTGCAGATTGGGACGGCATCGGCCGAGCGGGCTGTTGCCGTTGGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTGCC ] [+] EMBL CNS093HN [ AGCAGGATGAAATCGGACATCGACTACAGGAACAAGCTCGTGCTGGCCCCGATGGTGCGCGCCGGCACGCTGCCGATGCGGCTGCTGGCCCTCGAGTACGGTGCCGACCTGGTGTACACGGAGGAAATCATCGACTGGAAGCTGCTGCGAGCGGAACGCCACACGAACGAG ] [+] EMBL BX606149 [ ACTTTTCCATCAAGGGCGGTATGGGGGTGGCCCTGCTGTACGATCTGCCCCGAGCCAAGGCCATCCTCGAGGGGCTGGTGCAGGGCGTGCGGATACCGGTGACGTGCAAGATCCGGGTCATGCCCGATCTGGACGAAACGGTCGCGCTGGCGAAGGAGCTGCAGTCCACCGGCATACGGGCGATCGGGGTGCACGGGCGCACCAAGATGGAGCGACCGCGCGATCCAGTTAATGAAGGCGCCATTGCCCGGGTAGCAAACGCATTGCACATTCCGGTCATTGCGAACGGTGGCTCACAAAGCATCACCCGCCGGCACGATATACTGCGGTTTGCGCAGCGCTGCTCCACAACGAGCGTGATGGTGGCCCGAGCCGCCGAATGGAACTGTTCCGTGTTCCGGGCGGACGGTCCGCTGCCACTGGACGACGTGATTCGGCGCTATCTGGAGCTGTCCGTCCGGTACGACAACTCGCCCTCGAACACCAAGTACTGCGTGCAGATGATGCTGCGCAGCCTGCAGGAGAGCCCGATCGGGCGCCGTCTCCTGGACAGCCAAACGATGCAGCAGATATGCGATATCTGGGAAATGGGCGAGTACTGTCGGGAAACGCAGCTCCGATACCATTTCGCTGGCATCAAGGGTCGACGCGCCTGTCGGCCACGCACGCAGTCTGGGGACGGTGGTCCGGTAGCGGAAGGCAACGAGCCGACCGCTAGCAAAAAGCGGTGCCTTGAGGAATCGCCGGACTCCGATCCGGAGCCGCTGAACGAGGAAAACGTTTGCTTTATACGGTCCAATTTTATT ACGACAATTCGCTGCCAAAATCCAAACTCTACCTGCACGCGGTACGGAACGGGCTGCCGCGGG CCAGTA ] [+] EMBL BX602907 [ AAGGAGCTGCAGTCCACCGGCATACGGGCGATCGGGGTGCACGGGCGCACCAAGATGGAGCGACCGCGCGATCCAGTTAATGAAGGCGCCATTGCCCGGGTAGCAAACGCATTGCACATTCCGGTCATTGCGAACGGTGGCTCACAAAGCATCACCCGCCGGCACGATATACTGCGGTTTGCGCAGCGCTGCTCCACAACGAGCGTGATGGTGGCCCGAGCCGCCGAATGGAACTGTTCCGTGTTCCGGGCGGACGGTCCGCTGCCACTGGACGACGTGATTCGGCGCTATCTGGAGCTGTCCGTCCGGTACGACAACTCGCCCTCGAACACCAAGTACTGCGTGCAGATGATGCTGCGCAGCCTGCAGGAGAGCCCGATCGGGCGCCGTCTCCTGGACAGCCAAACGATGCAGCAGATATGCGATATCTGGGAAATGGGCGAGTACTGTCGGGAAACGCAGCTCCGATACCATTTCGCTGGCATCAAGGGTCGACGCGCCTGTCGGCCACGCACGCAGTCTGGGGACGGTGGTCCGGTAGCGGAAGGCAACGAGCCGACCGCTAGCAAAAAGCGGTGCCTTGAGGAATCGCCGGACTCCGATCCGGAGCCGCTGAACGAGGAAAACGTTTGCTTTATACGGTCCAATTTTATTGACGAACATTCGCTGCCAAAATCCAAACTC ] [-] EMBL CNS09FDU [ CGCAGTCTGGGGACGGTGGTCCGGTAGCGGAAGGCAACGAGCCGACCGCTAGCAAAAAGCGGTGCCTTGAGGAATCGCCGGACTCCGATCCGGAGCCGCTGAACGAGGAAAACGTTTGCTTTATACGGTCCAATTTTATTGACGACAATTCGCTGCCAAAATCCAAACTCTACCTGCACGCGGTACGGAACGGGCTGCCGCGGGCCCAGTACGAGGTGCAGCAGAAGGACAAACTGTTCCGGGCGACCATCCGGTTCGATGGCCAGCGCTACACCAGCTCGTTCTGGGAGAAGAATAAGCGATACGCGGAGCAGGCGGCCGCACTCGTGTGCCTGCTGAAGCGCGGGGTCGAGTCGCGCGACGAGCTGATACGGAATGGTGCGATGCTGCCGGCCAAAAATGGACCGGCCGCCGCTGTGGTGGAGCTGACCGACAGCAGCAAGACAGATGCTCCTGGGGAGAGTGAAACGAAACGGGGAGGCTCGACCGATGGTGGAAAGT] consensusID : consensus_7924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [CACCACGCGACCGGAACATCATATAAACAGTTGCGAGTCTATTGAAATTAATAGAAAAATACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGAACCTCCCGTGGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTGCCCGAAAGACTTTTCCATCAAGGGCGGTATGGGGGTGAGCCCTGCTGTACGATCTGCCCCGAGCCAAGGCCATCCTCGAGGGGCTGGTGCAGGGCGTGCGGAATACCG] [+] EMBL CNS09FDT [CACCACGCGACCGGAACATCATATAAACAGTTGCGAGTCTATTGAAATTAATAGAAAAATACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGAACCTCCCGTGGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTGCCCGAAAGACTTTTCCATCAAGGGCGGTATGGGGGTGAGCCCTGCTGTACGATCTGCCCCGAGCCAAGGCCATCCTCGAGGGGCTGGTGCAGGGCGTGCGGAATACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7924#0 CCGCTCACCACGCGACCGGAACATCATATAAACAGTTGCGAAGTCTATTGAAAATTAATA 60 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GAAAAATACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGAACCTCCCGTGGGTGGAC 120 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GAAAACTCCCGTTCGACCCCTCGCGCCACGTTGTGTTTATCAGCCCGCTACGAATGCGAC 180 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CAGCAACCCGGCCAGCAGGATGAAATCGGACATCGACTACAGGAACAAGCTCGTGCTGGC 240 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CCCGATGGTGCGCGTCGGCACGCTGCCGATGCGGCTGCTGGCCCTCGAGTACGGTGCCGA 300 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CCTGGTGTACACGGAGGAAATCATCGACTGGAAGCTGCTGCGAGCGGAACGCCACACGAA 360 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CGAGGTGCTCGGTACGATCGACTACATCGACACCACGGACGGTACGGTCGTGTTTCGTAC 420 consensus_7924#1 -------------------CACCACGCGACCGGAAC--ATCATATAAACA-GTTGCGAGT 38 ** ** * ** * ** * *** ** consensus_7924#0 CTGCCCGGACGAGCGGGGGAAGGTGGTGCTGCAGATTGGGACGGCATCGGCCGAGCGGGC 480 consensus_7924#1 CTATTGAAATTAATAGAAAAA--TACCCCAATACATTAAGTTTGGTGCTACAGCGAGTGA 96 ** * * * ** * * * *** * * * * * * * * consensus_7924#0 TGTTGCCGTTGGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTG 540 consensus_7924#1 ACCTCCCGT-GGGCAGATGATGCAAAACGATGTGGCCGCCATTGACGTGAACATGGGCTG 155 * **** ************************************************** consensus_7924#0 CCCGAAAGACTTTTCCATCAAGGGCGGTATGGGGGTG-GCCCTGCTGTACGATCTGCCCC 599 consensus_7924#1 CCCGAAAGACTTTTCCATCAAGGGCGGTATGGGGGTGAGCCCTGCTGTACGATCTGCCCC 215 ************************************* ********************** consensus_7924#0 GTGCCAAGGCCATCCTCGAGGGGCTGGTGCAGGGCGTGCGGA-TACCGGTGACGTGCAAG 658 consensus_7924#1 GAGCCAAGGCCATCCTCGAGGGGCTGGTGCAGGGCGTGCGGAATACCG------------ 263 * **************************************** ***** consensus_7924#0 ATCCGGGTCATGCCCGATCTGGACGAAACGGTCGCGCTGGCGAAGGAGCTGCAGTCCACC 718 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GGCATACGGGCGATCGGGGTGCACGGGCGCACCAAGATGGAGCGACCGCGCGATCCAGTT 778 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 AATGAAGGCGCCATTGCCCGGGTAGCAAACGCATTGCACATTCCGGTCATTGCGAACGGT 838 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GGCTCACAAAGCATCACCCGCCGGCACGATATACTGCGGTTTGCGCAGCGCTGCTCCACA 898 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 ACGAGCGTGATGGTGGCCCGAGCCGCCGAATGGAACTGTTCCGTGTTCCGGGCGGACGGT 958 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CCGCTGCCACTGGACGACGTGATTCGGCGCTATCTGGAGCTGTCCGTCCGGTACGACAAC 1018 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 TCGCCCTCGAACACCAAGTACTGCGTGCAGATGATGCTGCGCAGCCTGCAGGAGAGCCCG 1078 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 ATCGGGCGCCGTCTCCTGGACAGCCAAACGATGCAGCAGATATGCGATATCTGGGAAATG 1138 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GGCGAGTACTGTCGGGAAACGCAGCTCCGATACCATTTCGCTGGCATCAAGGGTCGACGC 1198 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GCCTGTCGGCCACGCACGCAGTCTGGGGACGGTGGTCCGGTAGCGGAAGGCAACGAGCCG 1258 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 ACCGCTAGCAAAAAGCGGTGCCTTGAGGAATCGCCGGACTCCGATCCGGAGCCGCTGAAC 1318 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GAGGAAAACGTTTGCTTTATACGGTCCAATTTTATTGACGACAATTCGCTGCCAAAATCC 1378 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 AAACTCTACCTGCACGCGGTACGGAACGGGCTGCCGCGGGCCAGTACGAGGTGCAGCAGA 1438 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 AGGACAAACTGTTCCGGGCGACCATCCGGTTCGATGGCCAGCGCTACACCAGCTCGTTCT 1498 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GGGAGAAGAATAAGCGATACGCGGAGCAGGCGGCCGCACTCGTGTGCCTGCTGAAGCGCG 1558 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GGGTCGAGTCGCGCGACGAGCTGATACGGAATGGTGCGATGCTGCCGGCCAAAAATGGAC 1618 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CGGCCGCCGCTGTGGTGGAGCTGACCGACAGCAGCAAGACAGATGCTCCTGGGGAGAGTG 1678 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 AAACGAAACGGGGAGGCTCGACCGATGGTGGAAAGT 1714 consensus_7924#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||