These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1388 fasta sequence [GGTAGACATAGCGGGTGCGGTGTTCCGCTAACTCCCAACTCCTTAAGTAGCTCATGCTCCATGAACGTGGATGTAGAGCCGTCATCTAAAAAAGCGAACGTATCTACTCGCCCACTGGGACCGTGCAGCGTAACGGTTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGACATTGAATCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAGATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATGAAGATGCACCGGTGTCTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGCGGCCAGAGTTCGGAGGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCAGATGGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGGCGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATCAAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAACGTCTCAGTGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGCGGCCTGGGGGAAACGAGAACCGGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGGGCAAACGGCAGGAATTGAGTCGAAGTTACTAAATAGCCTCCTGGCACGGGGGATTATGACACTAGCACATTGCAGCATCCTATCATCCACCTACG-CTTAACCGT-GGCCCAATAGCCATGACGGATAACCAGCAGCTCTACCACCCGATTGAAGTTCCCCTCGCCCACTGCAAGCAAGTT-AAGA-AAATCCAAAAGAATACAGCATCAGACATTGGAGCAAATCACGCTGGTGCAGACACGGAGACGGTTTTATGATCTCGTTAGCGTTCACTGTAACCAATGCCACCAACAATGTTAGTGTAAAGGATCTAGCAATGCAAAGATTATGCGGTTTTACACTATTTACAGATACACTATTACACACACCACACCACGCTAGTTGTACACATTTCGCTTNNGATCAAATCTTCCCGATGTGACGATGAAAATCAATTTTTAACCCTCGGTAATCGTAATGTTTAATGATCAATGTATAAATAAAGAGAGAACAAACAAAACAAGAAACGTACGCACACCAGCGGCATGCAATATGTTTTGGAATGATATCACAACCCGAAACTAATCAATCGAAAGCTTCCGTAGCGATAGGGTGTACGAGGAGAGACAAAAAAGGGGCAATTTCGGCAACATCTCATATCGCACCACGTAACCTCGGGGGGA] [+] EMBL BX625003 [GGTAGACATAGCGGGTGCGGTGTTCCGCTAACTCCCAACTCCTTAAGTAGCTCATGCTCCATGAACGTGGATGTAGAGCCGTCATCTAAAAAAGCGAACGTATCTACTCGCCCACTGGGACCGTGCAGCGTAACGGTTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGACATTGAATCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAGATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATGAAGATGCACCGGTGTCTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGCGGCCAGAGTTCGGAGGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCAGATGGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGGCGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATCAAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAACGTCTCAGTGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGCGGCCTGGGGGAAACGAGAACCGGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGG ] [+] EMBL BX615449 [ CGGCGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATCAAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAACGTCTCAGTGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGCGGCCTGGGGGAAACGAGAACCGGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGGGCAAACGGCAGGAATTGAGTCGAAGTTACTAAATAGCCTCCTGGCACGGGGGATTATGACACTAGCACATTGCAGCATCCTATCATCCACCTACG CTTAACCGT GGCCCAATAGCCATGACGGATAACCAGCAGCTCTACCACCCGATTGAAGTTCCCCTCGCCCACTGCAAGCAAGTT AAGA AAATCCAAAAGAATACAGCATCAGACATTGGAGCAAATCACGCTGGTGCAGACACGGAGACGGTTTTATGATCTCGTTAGCGTTCACTGTAACCAATGCCACCAACAATGTTAGTGTAAAGGATCTAGCAATGCAAAGATTATGCGGTTTTACACTATTTACAGATACACTATTACA ] [-] EMBL AL933270 [ TCCTATCATCCACGTACGTCTTAACCGTGGGCCCAATAGCCATGACGGATAACCAGCAGCTCTACCACCCGATTGAAGTTCCCNTCGCCCACTGCAAGCAAGTTGAAGAGAAATCCAAAAGAATACAGCATCAGACATTGGAGCAAATCACGCTGGTGCAGACACGGAGACGGTTTTATGATCTCGTTAGCGTTCACTGTAACCAATGCCACCAACAATGTTAGTGTAAAGGATCTAGCAATGCAAAGATTATGCGGTTTTACACTATTTACAGATACACTATTACACACACCACACCACGCTAGTTGTACACATTTCGCTTNNGATCAAATCTTCCCGATGTGACGATGAAAATCAATTTTTAACCCTCGGTAATCGTAATGTTTAATGATCAATGTATAAATAAAGAGAGAACAAACAAAACAAGAAACGTACGCACACCAGCGGCATGCAATATGTTTTGGAATGATATCACAACCCGAAACTAATCAATCGAAAGCTTCCGTAGCGATAGGGTGTACGAGGAGAGACAAAAAAGGGGCAATTTCGGCAACATCTCATATCGCACCACGTAACCTCGGGGGGA] consensusID : consensus_7927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 711 fasta sequence [CCGGTTCTGCTGAGTGACTAGCCAGTGCTTGGAGGGCTGCATTCGTTTCAGTGTTCAGTGCGGTTTTGATTAAGTGTCGTTTCCGCTGCGGAGCATTCAAGCAGAGTTGCAATTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGACATTGAATCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAGATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATGAAGATGCACCGGTGTCTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGCGGCCAGAGTTCGGAGGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCAGATGGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGGCGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATC-AAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAAC-GTCTCAGTGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGCGGCCTGGGGGAAACGAGAACCGGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGGGCAAAC] [+] EMBL BM601802 [CCGGTTCTGCTGAGTGACTAGCCAGTGCTTGGAGGGCTGCATTCGTTTCAGTGTTCAGTGCGGTTTTGATTAAGTGTCGTTTCCGCTGCGGAGCATTCAGGCAGAGTTGCAATTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACACGGACATTGATTCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAGATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATGAAGATGCACCGGTGTCTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGCGGCCAGAGTTCGGAGGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCCGATGGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGGCGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATCAAAGCGAAGCTGGAGCAAGATGAACGCGGCCTGGGGCAAACGGTCTCAGTGGTGG ] [+] EMBL BM632682 [ ccgGCTGAGTTACTAGCCAGTGCTTGGAGGGCTGCATTCGTTTCAGTGTTCAGTGCGGTTTTGATTAAGTGTCGTTTCCGCTGCGGAGCATTCAAGCAGAGTTGCAATTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGACATTGAATCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAGATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATGAAGATGCACCGGTGTCTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGCGGCCAGAGTTCGGAGGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCAGATGGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGGCGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATC AAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAAC GTCTCAGTGGTGGCAATCGGA ] [+] EMBL BX615197 [ GCCAGTGCTTTGAGGGCTGCATTCGTTTCAGTGTTCAGTGCGGTTTTGATTAAGTGTCGTTTCCGCTGCGGAGCATTCAAGCAGAGTTGCAATTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGACATTGAATCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAGATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATGAAGATGCACCGGTGTCTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGCGTCCAGAGTTCGGAGGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCAGATGGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGGCGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATC AAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAAC GTCTCAGTGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGCGGCCTGGGGGAAACGAGAACCGGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGGGCAAAC] [+] EMBL CNS0974E [ GTTTTGATTAAGTGTCGTTTCCGCTGCGGA CATTCAAGCAGAGTTGCAATTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGACAT ] consensusID : consensus_7927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [ACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATCAAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAACGTCTCAGTGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGGTAGGTATCGCACTATCCGGCTCGCAATGGCCCAATAGAGCCCGGGGAATAGTTTAGATTAATACGCTTGTTATTCGTTGAATTTCGTTGCCAGCGGCCTGGGGGAAACGAGAACCGGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGGGCAAACGGCAGGAATTGAGTCGAAGTTACTAAATAGCCTCCTGGCACGGGGGATTATGACACTAGCACATTGCAGCATCCTATCATCCACCTACGCTTAACCGTGGCCCAATAGCCATGACGGATAACCAGCAGCTCTACCACCCGATTGAAGT] [+] EMBL BX609578 [ACAGCCTGGCGGCACGTCTTGGCTACCCGCATGCGAACGGTGACATCAAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAACGTCTCAGTGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGGTAGGTATCGCACTATCCGGCTCGCAATGGCCCAATAGAGCCCGGGGAATAGTTTAGATTAATACGCTTGTTATTCGTTGAATTTCGTTGCCAGCGGCCTGGGGGAAACGAGAACCGGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGGGCAAACGGCAGGAATTGAGTCGAAGTTACTAAATAGCCTCCTGGCACGGGGGATTATGACACTAGCACATTGCAGCATCCTATCATCCACCTACGCTTAACCGTGGCCCAATAGCCATGACGGATAACCAGCAGCTCTACCACCCGATTGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7927#0 GGTAGACATAGCGGGTGCGGTGTTCCGCTAACTCCCAACTCCTTAAGTAGCTCATGCTCC 60 consensus_7927#1 -----------------CCG-GTTCTGCTGAGTGACTAGCCAGTGCTTGGA--GGGCTGC 40 consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 ATGAACGTGGATGTAGAGCCGTCATCTAAAAAAGCGAACGTATCTACTCGCCCACTGGGA 120 consensus_7927#1 ATTCGTTTCAGTGTTCAGTGCGGTTTTGATTAAGTGT-CGTTTCCGCTG---CGGAGCAT 96 consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 CCGTGCAGCGTAACGGTTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGAC 180 consensus_7927#1 TCAAGCAGAGTTGCAATTCTTCCAGTTCACATCCCATCAATTAAAAACCAAAACGCGGAC 156 consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 ATTGAATCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAG 240 consensus_7927#1 ATTGAATCTTTGAATCTTGTACGCTACATTGTAAGACATCAGACTTCCGCAGGATACTAG 216 consensus_7927#2 ----------------------------------------ACAGCCTGGCGGCACGTCTT 20 * * ** * * consensus_7927#0 ATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATG-AAGATGCACCGGTGT 299 consensus_7927#1 ATCTCGCTCGCACATCTCCAAGGACTCTTGAAGCGACAGCGATG-AAGATGCACCGGTGT 275 consensus_7927#2 GGCT-ACCCGCATGCGAACGGTGAC--ATCAAGCGAAGTTGGAGCAAGATGAACGCG--- 74 ** * **** * *** * ****** * * ****** ** * consensus_7927#0 CTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGC-GGCCAGAGTTCGGA 358 consensus_7927#1 CTGCTTTGTGTAGTCATCGCGCTGATGTCCGTGCTACACTGCAGC-GGCCAGAGTTCGGA 334 consensus_7927#2 --GCCTGGGGCAAACGTCTCAGTGGTGGCAAT-CGGAATTCCGGCTGGACCAAGTTTGGC 131 ** * * * * * ** * ** ** * * * * * * ** ** * **** ** consensus_7927#0 GGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCAGAT 418 consensus_7927#1 GGAACGGGCGCTGGGCAGCGATCCCAACTATCCGGAGCTGGATCGCAGCAAGATGCAGAT 394 consensus_7927#2 GGTA--GGTATCGCACTAT----CCGGCTCGCAATGGCCCAATAG-AGCCCGGGGAATA- 183 ** * ** * * ** ** * ** ** * *** * * * * consensus_7927#0 GGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGG 478 consensus_7927#1 GGCCAGCCTGAACGGCTTGCTGGACACGCTGGAGCACGATAGCACGCGACAGCTGGGCGG 454 consensus_7927#2 GTTTAGATTAATACGCTTGTT--ATTCGTTGAATTTCGTTGCCA-GCGGC--CTGGG--- 235 * ** * * ***** * * ** ** * ** * ** *** * ***** consensus_7927#0 CGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGC 538 consensus_7927#1 CGGACCCGACGACTACGAGCTGGTCGACAGCCTGGCGGCACGTCTTGGCTACCCGCATGC 514 consensus_7927#2 -GGAAACGAGAAC--CGGGATGG--AACAATCTGAAAGG--GTTGTGGG-----GTAAGC 283 *** *** ** ** * *** *** *** * ** *** * * ** consensus_7927#0 GAACGGTGACATCAAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAACGTCTCAG 598 consensus_7927#1 GAACGGTGACATCAAGCGAAGTTGGAGCAAGATGAACGCGGCCTGGGGCAAACGTCTCAG 574 consensus_7927#2 GCGCGGACAAGTGGGACAAGCTTGCATCGGCTTGGG-GCAAACGGCAGGAATTGAGTCGA 342 * *** * * * * *** * * ** ** * * * ** * ** consensus_7927#0 TGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGCGGCCTGGGGGAAACGAGAACC 658 consensus_7927#1 TGGTGGCAATCGGAATTCCGGCTGGACCAAGTTTGGCGCGGCCTGGGGGAAACGAGAACC 634 consensus_7927#2 AGTTACTAAATAGCCTCCTGGCACGGGGGATTATGACACTAGCACATTGCAGCAT--CCT 400 * * ** * * * *** * * * ** * * * * * * * consensus_7927#0 GGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCG-CGGACAAGTGGGACAAGCTTG 717 consensus_7927#1 GGGATGGAACAATCTGAAAGGGTTGTGGGGTAAGCGCG-CGGACAAGTGGGACAAGCTTG 693 consensus_7927#2 ATCATCCACCTACGCTTAACCGTGGCCCAATAGCCATGACGGATAACCAGCA-GCTCTAC 459 ** * * * ** ** * ** * * **** ** * * ** consensus_7927#0 CATCGGCTTGGGGCAAACGGCAGGAATTGAGTCGAAGTTACTAAATAGCCTCCTGGCACG 777 consensus_7927#1 CATCGGCTTGGGGCAAAC------------------------------------------ 711 consensus_7927#2 CACCCGATTGAAGT---------------------------------------------- 473 ** * * *** * consensus_7927#0 GGGGATTATGACACTAGCACATTGCAGCATCCTATCATCCACCTACGCTTAACCGTGGCC 837 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 CAATAGCCATGACGGATAACCAGCAGCTCTACCACCCGATTGAAGTTCCCCTCGCCCACT 897 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 GCAAGCAAGTTAAGAAAATCCAAAAGAATACAGCATCAGACATTGGAGCAAATCACGCTG 957 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 GTGCAGACACGGAGACGGTTTTATGATCTCGTTAGCGTTCACTGTAACCAATGCCACCAA 1017 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 CAATGTTAGTGTAAAGGATCTAGCAATGCAAAGATTATGCGGTTTTACACTATTTACAGA 1077 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 TACACTATTACACACACCACACCACGCTAGTTGTACACATTTCGCTTNNGATCAAATCTT 1137 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 CCCGATGTGACGATGAAAATCAATTTTTAACCCTCGGTAATCGTAATGTTTAATGATCAA 1197 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 TGTATAAATAAAGAGAGAACAAACAAAACAAGAAACGTACGCACACCAGCGGCATGCAAT 1257 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 ATGTTTTGGAATGATATCACAACCCGAAACTAATCAATCGAAAGCTTCCGTAGCGATAGG 1317 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 GTGTACGAGGAGAGACAAAAAAGGGGCAATTTCGGCAACATCTCATATCGCACCACGTAA 1377 consensus_7927#1 ------------------------------------------------------------ consensus_7927#2 ------------------------------------------------------------ consensus_7927#0 CCTCGGGGGGA 1388 consensus_7927#1 ----------- consensus_7927#2 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||