These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1753 fasta sequence [CGGACAAAAATGTTCTTCCGTTTAGCGATTAATGAATTGCCAGAGTTATATTATAGCAAAAGCAGCAAGCAAGTTGGTTGGTTGGTTACGAACTTTAAGAAACGAGAAAAAAAAACGATTTATATCGCAAACGATGAAGTAAAACTTCATATCCGAGTAGCAAACTTCTTCTTAACTATATACAAAAACAATAACACTCTTTTTCCCGCAATCAATGCCAATACAATAACGCTCTACAATAGCCCCCAAGTAATATAATCATCCTTACAGCAATAATAGTG-TCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTAAATACGACTGGGGCGGAAGCAAACATTTATCGCTAATTTTTGTTCTTCTTCTTCCTCTGTTTTACGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGTTCGTATGCACTGCTCCCTTGCAGGGACAGTTTCGTGGAACAAGCAGATTCCTTATTAGCTCTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCTTACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGGTGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTGTAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGAATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAATATGCTATGCCGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCCTATCAAAAAGGTATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATTTTAAGTTAGGAAAAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACATACATAGAGACGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGTGATGTGTGTGAGTGTTTGTGTGTGTTTGGATCCCTTTTAGCGTCTTTTCCCCCCTCCATTGAATGAACTTGATTAGAAACAGCAACAAAAGTATGTGGTATTTGTATTAATGAATTGGATGACAGAAACAGAACAACCCTAAAAAAAAGTGCCCGCCATTATTGTTTCCATTGTTTTCACACAATTGGTATATCACACATTGTTTGTTTGTGGGTGTTTAACAAGCAAAAGTACAACAAATATACTGATCGTAGTGAAATTTGCTGATATATAGTAAATATATGGAGCGCAGCTTTTCCGTTAGTT] [+] EMBL BX622402 [CGGACAAAAATGTTCTTCCGTTTAGCGATTAATGAATTGCCAGAGTTATATTATAGCAAAAGCAGCAAGCAAGTTGGTTGGTTGGTTACGAACTTTAAGAAACGAGAAAAAAAAACGATTTATATCGCAAACGATGAAGTAAAACTTCATATCCGAGTAGCAAACTTCTTCTTAACTATATACAAAAACAATAACACTCTTTTTCCCGCAATCAATGCCAATACAATAACGCTCTACAATAGCCCCCAAGTAATATAATCATCCTTACAGCAATAATAGTG TCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTAAATACGACTGGGGCGAAAGCAAACATTTATCGCTAATTTTTGTTCTTCTTCTTCCTCTGTTTTACGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGTTCGTANGCACTGCTCCCTTGCAGGGACAGTTTCGTGGAACAAGCAGATTCCTTATTAGCTCTTGGTTGGTTAGAGAGGA ] [+] EMBL BM628562 [ ccgAATGCCAATACCATAACGCTCTACAATAGCCCCCAATTAATATAATCATCCTTACAGCAATAATAGTG TCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTACATACGACTGGAGCGGAAGCAAACATTTATCGCTACTTTTTGTTCTTCTTCTTCCTCTGTTTTACGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGTTCGTAGGCACTGCTCCCTGGCAGGGACAGTTTCG ] [+] EMBL CNS094WZ [ AGCAATAATAGTGCTCGCCATTCCTCCTGCTATATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGAACGCAGTTACAT ] [+] EMBL BM646646 [ ccgCAGATCGCAGATAAATACGACTGGGGCGGAAGCAAACATTTATCGCTATGTTTTGTTCTTCTTCT TCTGTTTTTCGTACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATGTTAGGGAGCTGCTTAAGTACGTCGTTTCTTATTTGTATCCTTGGCTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACTGAATGTGTCTGTTCGTATGCACTGCTCCCTTGTAGGGACAGTTTTGTGGAACAAGCAGATTCCTTATTAGCTCTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCTTACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGGTGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTGTAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGAATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAATATGCTATG ] [+] EMBL BX613014 [ TTAGGGAGCTGCTTAAGTACGTCCTTTCTTATTTGTATCCTTGGCTAAGAGCTGCAGATTGATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACTGAATGTGTCTGTTCGTATGCACTGCTCCCTTGTAGGGACAGTTTTGTGGAACAAGCAGATTCCTTATTAGCTCTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCTTACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGGTGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTGTAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGAATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAATATGCTATGCCGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTA ] [+] EMBL BM588188 [ ccgCCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCCTATCAAAAAGGTATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATTTTAAGTTAGGAAAAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACATACATAGAGACGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGTGATGTGTGTGAGTGTTTGTGTGTGTTTGGATCCCTTTTAGCGTCTTTTCCCCCCTCCATTGAATGAACTTGATTAGAAACAGCAACAAAAGTATGTGGTATTTGTATTAATGAATTGGATGACAGAAACAGAACAACCCTAAAAAAAAGTGCCCGCCATTATTGTTTCCATTGTTTTCACACAATTGGTATATCACACATTGTTTGTTTGTGGGTGTTTAACAAGCAAAAGTACAACAAATATACTGATCGTAGTGAAATTTGCTGATATATAGTAAATATATGGAGCGCAGCTTTTCCGTTAGTT] [-] EMBL CNS094X0 [ GATGTCGGGGAAGGTAGAAACGAAAGAGAT ATGCATAGAGAGGGCTATGGAGCTATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATTACGGGAATACATGGGATGTGTGTGAGTGTTTGTGTGTGTTTGGATCCTTTTTAGCGTCTCTTCCCCCCTCC ] consensusID : consensus_7934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CCTCGCAGAATCGNCACGAGGTTGNGATTATAGAAAACAATTGCAACAATCATGCTATGCCGGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCTTATCAAAAAGGTAATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATCTTAAGTTGAGAAGAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACACAGTGATGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGGGATGTGTGTGACGTGT] [+] EMBL BX469739 [CCTCGCAGAATCGNCACGAGGTTGNGATTATAGAAAACAATTGCAACAATCATGCTATGCCGGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAATTGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAAAGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCCAGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCTTATCAAAAAGGTAATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTATTATCTTAAGTTGAGAAGAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACACAGTGATGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGTTGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGGGAACACATGGGATGTGTGTGACGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7934#0 CGGACAAAAATGTTCTTCCGTTTAGCGATTAATGAATTGCCAGAGTTATATTATAGCAAA 60 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 AGCAGCAAGCAAGTTGGTTGGTTGGTTACGAACTTTAAGAAACGAGAAAAAAAAACGATT 120 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TATATCGCAAACGATGAAGTAAAACTTCATATCCGAGTAGCAAACTTCTTCTTAACTATA 180 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TACAAAAACAATAACACTCTTTTTCCCGCAATCAATGCCAATACAATAACGCTCTACAAT 240 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 AGCCCCCAAGTAATATAATCATCCTTACAGCAATAATAGTGTCGCCATTCCTCCTGCTAT 300 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 ATAGTTGCGTTATACAGCATAGGACCTCATCATACGTACGACAGATCGCAGTTAAATACG 360 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 ACTGGGGCGGAAGCAAACATTTATCGCTAATTTTTGTTCTTCTTCTTCCTCTGTTTTACG 420 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TACTGCAAACAAATCATCTACAAAACACACATTCGCACACACGCATACAATAGCTTTATG 480 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TTAGGGAGCTTCTTAAGTACGTCGTTTCTTATTTGTATCCTTGACTAAGAGCTGCAGATT 540 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 GATGTGTAAAGAGAGAAGTAAAGCGCACGCACGCAAGATGTTGCAACCGAATGTGTCTGT 600 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TCGTATGCACTGCTCCCTTGCAGGGACAGTTTCGTGGAACAAGCAGATTCCTTATTAGCT 660 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 CTTGTTTGTTTAGAGAGGACTCCGGTTTATTGTTTTCGTTTATTCTTTATAGTCTATGCT 720 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TACGACGCCGCAGCCGGCAGCAACATTCGCTCTTGATGTGTGATTGTTCACAGTGCGCGG 780 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TGGGCAAAAGTGTACAAAGCAAGCAGCAAGATCGTGATGATGATGATGATGTTGATTGTG 840 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 TAAATTTACTTTCTGTGAAGAAGTTGTGTGCGTGCGCGCGTGTGTATTACGCCACACCGA 900 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 ATGTGATGTAGTAGATGTGTAAAGCGGATTATAGAAAACAATTGCAACAAT-ATGCTATG 959 consensus_7934#1 -CCTCGCAGAATCGNCACGAGGTTGNGATTATAGAAAACAATTGCAACAATCATGCTATG 59 * * * * * ************************* ******** consensus_7934#0 CCG-TACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAAT 1018 consensus_7934#1 CCGGTACATTAAAGAAAGTATATCATCCAAAATGACAAGTAGCCATCATGTTTCTATAAT 119 *** ******************************************************** consensus_7934#0 TGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAA 1078 consensus_7934#1 TGATTACGAGTAACTTGAAGCAAGCCGTTGGATAGAACGAAAGCAAAGGAATGGAACGAA 179 ************************************************************ consensus_7934#0 AGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCC 1138 consensus_7934#1 AGTACTCACAAATCGTCGTAAACCACGTACACACTTTTCGTGTAGACGGGGAAGACAGCC 239 ************************************************************ consensus_7934#0 AGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCCTATCA 1198 consensus_7934#1 AGCCAAGCCAGCGCGCGGGAGGATCTATCCGGTGATTTTAGTTTTAGTAAATCCTTATCA 299 ****************************************************** ***** consensus_7934#0 AAAAGGTA-TAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTA 1257 consensus_7934#1 AAAAGGTAATAGAGAAAGAGCAAACGCGTTCTATAAAAAGAAGTTATTTTCTCCCGATTA 359 ******** *************************************************** consensus_7934#0 TTATTTTAAGTTAGGAAAAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACATA 1317 consensus_7934#1 TTATCTTAAGTTGAGAAGAAAAAGATGTCGGGGAAGGTAGAAACGAAAGAGATATACAC- 418 **** ******* *** **************************************** consensus_7934#0 CATAGAGACGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGT 1377 consensus_7934#1 ---AGTGATGGCTATGGAGCAATATATGATATCAGTGCAAGCGTGCACGACACATCTGGT 475 ** ** *************************************************** consensus_7934#0 TGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGG 1437 consensus_7934#1 TGCTAACAGCAACCGAAAGGGTGAACGTGGTCGCGTGTTTGTATATACTGGACATCACGG 535 ************************************************************ consensus_7934#0 GAACACATGTGATGTGTGTGA-GTGTTTGTGTGTGTTTGGATCCCTTTTAGCGTCTTTTC 1496 consensus_7934#1 GAACACATGGGATGTGTGTGACGTGT---------------------------------- 561 ********* *********** **** consensus_7934#0 CCCCCTCCATTGAATGAACTTGATTAGAAACAGCAACAAAAGTATGTGGTATTTGTATTA 1556 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 ATGAATTGGATGACAGAAACAGAACAACCCTAAAAAAAAGTGCCCGCCATTATTGTTTCC 1616 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 ATTGTTTTCACACAATTGGTATATCACACATTGTTTGTTTGTGGGTGTTTAACAAGCAAA 1676 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 AGTACAACAAATATACTGATCGTAGTGAAATTTGCTGATATATAGTAAATATATGGAGCG 1736 consensus_7934#1 ------------------------------------------------------------ consensus_7934#0 CAGCTTTTCCGTTAGTT 1753 consensus_7934#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||