These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 738 fasta sequence [CCGCCCACGCGTCCGGAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA-GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC-AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC-TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGAAAGCACAGGTAATTTACGAAAACCTCGCCCAGGCCATGGCCGGAGGAAGAGCA] [+] EMBL BM599994 [CCGCCCACGCGTCCGGTATAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGTGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGCTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCC ] [+] EMBL BM590131 [ CCGAAAAAAAACACAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATCAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGCTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCCTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAAAAAGCACAG ] [+] EMBL BM587575 [ ccgAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGAA ] [+] EMBL BM603443 [ ccgCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGA ] [+] EMBL BM604485 [ TGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAACAACCACGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGCAAAATCGTGCGTGTACGCGCTGCAGCTGCAGGACCTGTGCGCC TCGGACTGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGC ] [+] EMBL BM585817 [ ccGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCC TCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGTGGCAATCGGCGGCAGAAAACCTGAAGAAAGCGCAGGTAATTTACGAAAACCTCGCCCAGGCCATGGCCGGAGGAAGAGCA] [+] EMBL BM576036 [ ccgCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCA GCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGC AAATCGTGCGTGTACGCGCTGCAGTTGCAGGACCTGTGCGCCATCGGACCGGTGCGACGCGCGCACGAAGCTGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCA ] consensusID : consensus_7935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [TGGCTTGGGGGGGGTATAAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCACACTTT] [+] EMBL CNS08PRK [TGGCTTGGGGGGGGTATAAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAGTATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAGAAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAGAACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGGACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCTCCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACTACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCCTGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGGAATCGAACACGGAGCCGCGCACACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7935#0 --CCGCCCACGCGTCCGGAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAG 58 consensus_7935#1 TGGCTTGGGGGGGGTATAAAAAAAACATAATCGGTGAATTTGGTGTGCTCTCAGGAAAAG 60 * * * ****************************************** consensus_7935#0 TATAAATTTATTCCATATTTACCAGCCAAATCGGATAAATTATGGTTGAATCGAAAGCAG 118 consensus_7935#1 TATAAATTTATTCCATATTTACCAGCCCAATCGGATAAATTATGGTTGAATCGAAAGCAG 120 *************************** ******************************** consensus_7935#0 AAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAG 178 consensus_7935#1 AAAAGGCGGAGGTAGGCCGAGAAGATGTCGAAGCCGACAAGGAAAACATGGACGTGGAAG 180 ************************************************************ consensus_7935#0 AACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGG 238 consensus_7935#1 AACCAGCGGCGGATGCCCCGATGAAAGTGTTTACGGTGGAAATACTTCGTCTGATCAAGG 240 ************************************************************ consensus_7935#0 ACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCT 298 consensus_7935#1 ACATGCAGCTACAGCACGGTCTCCGGCATGGCGACTTCCAGCGCTACCGTGGCTACTGCT 300 ************************************************************ consensus_7935#0 CCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACT 358 consensus_7935#1 CCCGGCGCGTCAAGCGGCTCCGCAAAACGCTCAACCTGCCCCAGGGCGACCGGCGCCACT 360 ************************************************************ consensus_7935#0 ACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCC 418 consensus_7935#1 ACAAGAAGCGCAACGTGACGCTCGCCAACCTGGAGAAGCCGAACTCGGACGAGCGGTTCC 420 ************************************************************ consensus_7935#0 TGCACATCCCGCTCATGCTGGCCGAGCGGACCTGGTCGTACGCGATGCAGCTGCGGCAGG 478 consensus_7935#1 TGCACATCCCGCTCATGCTGGCCGAACGGACCTGGTCCTACGCGATGCAGCTGCGGCAGG 480 ************************* *********** ********************** consensus_7935#0 AATCGAACACGGAACCGCGCAAACGGTTCCATCTGATCGAGAAGCTGCGCAAATCGTGCG 538 consensus_7935#1 AATCGAACACGGAGCCGCGCACACTTT--------------------------------- 507 ************* ******* ** * consensus_7935#0 TGTACGCGCTGCAGTTGCAGGACCTGTGCGCCTCGGACCGGTGCGACGCGCGCACGAAGC 598 consensus_7935#1 ------------------------------------------------------------ consensus_7935#0 TGGAGGCGGAAGCGTACTCCGCCTGGATCCATGGTTCGCTGCACTTCGAGCTGGGACTGT 658 consensus_7935#1 ------------------------------------------------------------ consensus_7935#0 GGCAATCGGCGGCAGAAAACCTGAAGAAAGCACAGGTAATTTACGAAAACCTCGCCCAGG 718 consensus_7935#1 ------------------------------------------------------------ consensus_7935#0 CCATGGCCGGAGGAAGAGCA 738 consensus_7935#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||