These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 964 fasta sequence [CGACCCACGCGTCCGCAAAACATAAAACGAATGTATGTATGTCTGTTTTATGTTTGATGTAAAATGTATGTGGAATAATATGTGTGACACACAACAAGCATGGAAAATTGTAAGGGGAACAGCAAAACCAGCAAAACACATAAAACGAAAACAAAAACAAAAAAAAAACAAATCATTGTGGATATTGTAAAACATGGCGCCTAAACCACAAAACAACAAAACACAGCTGTAAGAAAATGATGTTAAGTTAGAAGAAGAGTAAAACAAAAGCAAAGCATAAACGAAACAAACAAAT--ACACACACACAAAGAACATTAGAAGACAAAATTGAGATCGTTTCGGTTAGAAGTTAAAAAAATGGATTATTTTCGTTTGTAAATATTGTAAACAGCGCAAAAACACGTGTTTGAGTGATTTCTTTAATTTTTGTTTTGGCATTGTTTCTGCGAAACAGTTTCTCGTTAAGCCAAATCTCCTAAATTTTCTTTAAAAAAAAGCAAATCATAGTAAAACTACTAAAACCCCAGCAATCGAGCTACTGTCGAAAGCCACTATTATTACTACTTCTTCTATGGACACACACAATCACACATAATGCATTGAGGTTTCTACTTATAACGGGCACCAGTCGAATGATAAGGCGCGAGTGTGTGTGTGTGGTGGAATAGAAAAATAAGAAGAAGAAAACAACGGGACTGACACGGGTTTGCTGGGCAACAACCAGGTACACACGACGACGCTGGAGATTCCGGATTCGAACAGCGAGAGCAACGCAAACACTTGTAGCATGTATTAGGTATTAGAATTGAATTGATAACGGTCCTTGGCCCGTCCCTTTGCTTGTTGGATTGGAGATGGGTTTAGTAGATTGTGTGCAGTAGTAGCAGAAGAAGGAGGGAGGAGGAGGTGACAGTGGTGAAATTGCAAACAATCCCTTCTATCATCTCTCTCTCTCCTGCGACTAG] [+] EMBL BM577675 [CGACCCACGCGTCCGCAAAACATAAAACGAATGTATGTATGTCTGTTTTATGTTTGATGTAAAATGTATGTGGAATAATATGTGTGACACACAACAAGCATGGAAAATTGTAAGGGGAACAGCAAAACCAGCAAAACACATAAAACGAAAACAAAAACAAAAAAAAAACAAATCATTGTGGATATTGTAAAACATGGCGCCTAAACCACAAAACAACAAAACACAGCTGTAAGAAAATGATGTTAAGTTAGAAGAAGAGTAAAACAAAAGCAAAGCATAAACGAAACAAACAAAT ACACACACACAAAGAACATTAGAAGACAAAATTGAGATCGTTTCGGTTAGAAGTTAAAAAAATGGATTATTTTCGTTTGTAAATATTGTAAACAGCGCAAAAACACGTGTTTGAGTGATTTCTTTAATTTTTGTTTTGGCATTGTTTCTGCGAAACAGTTTCTCGTTAAGCCAAATCTCCTAAATTTTCTTTAAAAAAAAGCAAATCATAGTAAAACTACTAAAACCCCAGCAATCGAGCTACTGTCGAAAGCCACTATTATTACTACTTCTTCTATGGACACACACAATCACACATAATGCATTGAGGTTTCTACTTATAACGGGCACCAGTCGAATGATAAGGCGCGCGTGTGTGTGTGTGGTGGAATAGAAAAAGAAGA ] [+] EMBL BX620160 [ GTATGTCTGTTTTATGTTTGNTGTAAAATGTATGTGGAATAATATGTGTGACACACAACAAGCATGGAAAATTGTAAGGGGAACAGCAAAACCAGCAAAACACATAAAACGAAAACAAAAACAAAAAAAAAACAAATCATTGGGGATATTGTAAAACATGGCGCCTAAACCACAAAACAACAAAACACAGCTGTAAGAAAATGAAGTTAAGTTAGAAGAAGAGTAAAACAAAAGCAAAGCATAAACGAAACAAACAAATACACACACACACAAAGAACATTAGAAGACAAAATTGAGATCGTTTCGGTTAGAAGTTAAAAAAATGGATTATTTTCGTTTGTAAATATTGTAAACAGCGCAAAAACACGTGTTTGAGTGATTTCTTTAATTTTTGTTTTGGCATTGTTTCTGCGAAACAGTTTCTCGTTAAGCCAAACCTCCTAAATTTTCTTTTAAAAAAAGCAAATCATAGTAAAACTACTAAAACCCCAGCAATCGAGCTACTGTCGAGAGCCACTATTATTACAACTTCTTCTATGGACACACACAATCACACATAATGCATTGAGGTTTCTACTTATAACGGGCACCAGTCGAATGATAAa ] [+] EMBL BM608906 [ ccgGGGCACCAGTCGAATGATAAGGCGCGAGTGTGTGTGTGTGGTGGAATAGAAAAATAAGAAGAAGAAAACAACGGGACTGACACGGGTTTGCTGGGCAACAACCAGGTACACACGACGACGCTGGAGATTCCGGATTCGAACAGCGAGAGCAACGCAAACACTTGTAGCATGTATTAGGTATTAGAATTGAATTGATAACGGTCCTTGGCCCGTCCCTTTGCTTGTTGGATTGGAGATGGGTTTAGTAGATTGTGTGCAGTAGTAGCAGAAGAAGGAGGGAGGAGGAGGTGACAGTGGTGAAATTGCAAACAATCCCTTCTATCATCTCTCTCTCTCCTGCGACTAG] [+] EMBL BM600272 [ ccgGGGCACCAGTCGAATGATAAGGCGCGAGTGTGTGTGTGTGGTGGAATAGAAAAATAAGAAGAAGAAAACAACGGGACTGACACGGGTTTGCTGGGCAACAACCAGGTACACACGACGACGCTGGAGATTCCGGATTCGAACAGCGAGAGCAACGCAAACACTTGTAGCATGTATTAGGTATTAGAATTGAATTGATAACGGTCCTTGGCCCGTCCCTTTGCTTGTT GATTGGAGATGGGTTTAGTAGATTGTGTGCAGTAGTATCAGAAGAAGGA GGAGGAGGAGGTGACAGTGGTGAAATTGCAAACAATCCCTTCTATCATCTCTCTCTCTCCTGCGACTAG] consensusID : consensus_7941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 873 fasta sequence [TTTTTTTTAGAGATAGCTTTTAGAGAGAGAAGGAAAAAAAGGGTGTTTATTGACAAAAGAAACTGTGACGCGGGTTACTCCTTAAATTCCAACACACACACACACAACTCATCAAATGGTGCATTTTGTTGTTGTTTGTTTTCTCGCTTCTAACTTGTGTGTGTGTTTTTAGCTGATTTTGATAAATTATTTCCTGCACGTTAAATGTGTCAGCTCAGTCAGGCGAAAAGGCACAAACATAACGTCGTTTTATAGGTTTAAGCAAAAAAGAAAAGAAAACGGGGATAACGAAAACACACAGTGACAGTGGGAATGGGACACTGCTGGAAAAGAATGGCTTTAATTATTGGAATTTAAATGAAAGGGCGATGGAGAAGTAGTAGCAAAAATAAAAACAAGCATAGGTAAAACGAGAAACAAAAGAAAGGAAAGAAGGGCAATAGAGAGAAGTTCGTTATTTAACAAACAAAACACTATTCAAAATGTATAACAAATAACTCCGGAACAAAACAAAATATGACAAAATACTAGGGGTTTTTTTGTTCTTCTCATAATCCAAAACACACAACAACAAGAGCAACAATGTATACACAAACACATAAAAACCCCTCAATCAAAGTATTGCTAAGTTTGTACAGTGGGGGTGGGAAAACAGAGAAGAAAAAAAGAAAATCATAATGGCACCAGCAAATCTACATTACTAATACGAGACTGCAGTTCAGAAAACAAAACACAAAACATAAAACGAATGTATGTATGTCTGTTTTATGTTTGATGTAAAATGTATGTGGAATAATATGTGTGACACACAACAAGCATGGAAAATTGTAAGGGGAACAGCAAAACCAGCAAAACACATAAAACGAAAACAAA] [+] EMBL AGA283712 [TTTTTTTTAGAGATAGCTTTTAGAGAGAGAAGGAAAAAAAGGGTGTTTATTGACAAAAGAAACTGTGACGCGGGTTACTCCTTAAATTCCAACACACACACACACAACTCATCAAATGGTGCATTTTGTTGTTGTTTGTTTTCTCGCTTCTAACTTGTGTGTGTGTTTTTAGCTGATTTTGATAAATTATTTCCTGCACGTTAAATGTGTCAGCTCAGTCAGGCGAAAAGGCACAAACATAACGTCGTTTTATAGGTTTAAGCAAAAAAGAAAAGAAAACGGGGATAACGAAAACACACAGTGACAGTGGGAATGGGACACTGCTGGAAAAGAATGGCTTTAATTATTGGAATTTAAATGAAAGGGCGATGGAGAAGTATTAGCAAAAATAAAAACAAGCATAGGTAAAACGA ] [-] EMBL AGA285000 [ TTGTTTTCTCGCTTCTAACTTGTGTGTGTGTTTTTAGCTGATTTTGATAAATTATTTCCTGCACGTTAAATGTGTCAGCTCAGTCAGGCGAAAAGGCACAAACATAACGTCGTTTTATAGGTTTAAGCAAAAAAGAAAAGAAAACGGGGATAACGAAAACACACAGTGACAGTGGGAATGGGACACTGCTGGAAAAGAATGGCTTTAATTATTGGAATTTAAATGAAAGGGCGATGGAGAAGTAGTAGCAAAAATAAAAACAAGCATAGGTAAAACGAGAAACAAAAGAAAGGAAAGAAGGGCAATAGAGAGAAGTTCGTTATTTAACAAACAAAACACTATTCAAAATGTATAACAAATAACTCCGGAACAAAACAAAATATGACAAAATACTAGGGGTTTTTTTGTTCTTC ] [+] EMBL BM583775 [ ccgGTTTTATAGGTTTAAGCAAA AAAA AAAACGGGGATAACGAAAACACACAGTGACAGTGGAAGTGGGAAACTACTGGAAAAGAATGGCTTTAATTATTGGAATTTAAATGAAAGGGCGATGGAGAAGTAGTAGCAAAAATAAAAACAAGCATAGGTAAACCGAGAAACAAAAGAAAGGAAAGAAGGGCAATAGAGAGAAGTTCGTTATTTAACAAACAAAACACTATTCAAAATGTATTACAAATAACTCCGGAACAAAACAAAATATGACAAAATACTAGGGGTTTTTTTGTTCTTCTCATAATCCAAAACACACAACAACAAGAGCAACAATGTATACACAAACACATAAAAACCCCTCAATCAAAGTATTGCTAAGTTTGTAC ] [-] EMBL AGA283646 [ TAACAAACAAAACACTATTCAAAATGTATAACAAATAACTCCGGAACAAAACAAAATATGACAAAATACTAGGGGTTTTTTTGTTCTTCTCATAATCCAAAACACACAACAACAAGAGCAACAATGTATACACAAACACATAAAAACCCCTCAATCAAAGTATTGCTAATTTTGTACAGTGGGGGTGGGAAAACAGAGAAGAAAAAAAGAAAATCATAATGGCACCAGCAAATCTACATTACTAATACGAGACTGCAGTTCAGAAAACAAAACACAAAACATAAAACGAATGTATGTATGTCTGTTTTATGTTTGATGTAAAATGTATGTGGAATAATATGTGTGACACACAACAAGCATGGAAAATTGTAAGGGGAACAGCAAAACCAGCAAAACACATAAAACGAAAACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7941#0 ----CGACCCACGCGTCCGCAAAACATAAAACGAATGTATGTATGTCTGTTTTATGTTTG 56 consensus_7941#1 TTTTTTTTAGAGATAGCTTTTAGAGAGAGAAGGAAAAAAAGGGTGTTTATTGACAAAAGA 60 * * * * * * ** *** * * *** * ** consensus_7941#0 ATGTAAAATGTATGTGGAATAATATGTGT-GACACACAACAAGCATGGAAAATTGTAAGG 115 consensus_7941#1 AACTGTGACGCGGGTTACTCCTTAAATTCCAACACACA-CACACACAACTCATCAAATGG 119 * * * * ** ** * ******* ** ** ** * ** consensus_7941#0 GGAACAGCAAAACCAGCAAAACACATAAAACGAAAACAAAAACAAAAAAAAAACAAATCA 175 consensus_7941#1 TGCATTTTGTTGTTGTTTGTTTTCTCGCTTCTAACTTGTGTGTGTGTTTTTAGCTGATTT 179 * * * * ** * * ** consensus_7941#0 TTGTGGATATTGTAAAACATG------GCGCCTAAACCACAAAACAACAAAACACAGCTG 229 consensus_7941#1 TGATAAATTATTTCCTGCACGTTAAATGTGTCAGCTCAGTCAGGCGAAAAGGCACAAACA 239 * * ** * * ** * * * * * * * * ** **** consensus_7941#0 TAAGAAAATGATGTTAAGTTAGAAGAAGAGTAAAACAAAAGCAAAGCATAAACGAAACAA 289 consensus_7941#1 TAACGTCGTTTTAT-AGGTTTAAGCAAAAAAGAAAAGAAAACGGGG-ATAACGAAAACAC 297 *** * * * * *** * ** * *** *** * * **** ***** consensus_7941#0 ACAAATACACACACACAAAGAACATTAGAAGACAAAATTGAGATCGTTTCGGTTAGAAGT 349 consensus_7941#1 ACAGTGACA-GTGGGAATGGGACACTGCTGGAAAAGAATGGCTTTAATT--ATTGGAATT 354 *** *** * * *** * ** ** * ** * ** ** *** * consensus_7941#0 TAAAAAAATGGATTATTTTCGTTTGTAAATATTGTAAACAGCGCAAAAACACGTGTTTGA 409 consensus_7941#1 TAAATGAAAGGGCGAT--------GGAGAAGTAGTAGCAAAAATAAAAACAAGCATAGGT 406 **** ** ** ** * * * * *** * ******* * * * consensus_7941#0 GTGATTTCTTTAATTTTTGTTTTGGCATTGTTTCTGCGAAACAGTTTCTCGTTAAGCCAA 469 consensus_7941#1 AAAACGAGAAACAAAAGAAAGGAAAGAAGGGCAATAGAGAGAAGTTCGTTATTTAACAAA 466 * * * * * * **** * ** * * ** consensus_7941#0 ATCTCCTAAATTTTCTTTAAAAA--AAAGCAAATCATAGTAAAACTACTAAAACCCCAGC 527 consensus_7941#1 -----CAAAACACTATTCAAAATGTATAACAAATAACTCCGGAAC----AAAACAAAATA 517 * *** * ** **** * * ***** * *** ***** * consensus_7941#0 AATCGAGCTACTGTCGAAAGCCACTATTATTACTACTTCTTCTATGGACACACACAATCA 587 consensus_7941#1 TGACAAAATACT----AGGGGTTTTTTTGTT-CTTCTCATAATCCAAA-ACACACAACAA 571 * * **** * * * ** ** ** ** * * * ******** * consensus_7941#0 CACATAATGCATTGAGGTTTCTACTTATA-ACGGGCACCAGTCGAATGATAAGGCGCGAG 646 consensus_7941#1 CA---AGAGCAACAATGTATACACAAACACATAAAAACCCCTCAAT---CAAAGTATTGC 625 ** * *** * ** * ** * * * *** ** * ** * consensus_7941#0 TGTGTGTGTGTGGTGGAATAGAAAAATAAGAAGAAGAAAACAACGGGACTGACACGGGTT 706 consensus_7941#1 TAAGTTTGTACAGTGGGGGTGGGAAAACAGA-GAAGAAAAAAAGAAAATCATAATGGC-- 682 * ** *** **** * *** *** ******** ** * * ** consensus_7941#0 TGCTGGGCAACAACCAGGTACACACGACGACGCTGGAGATTCCGGATTCGAACAGCGAGA 766 consensus_7941#1 ---------ACCAGCAAATCTACATTACTA-ATACGAGACTGCAGTTCAGAAAACAAAAC 732 ** * ** * *** ** * **** * * * * *** * * consensus_7941#0 GCAACGCAAACACTTGTAGCATGTAT-TAGGTATTAGAATTGAATTGATAACGGTCCTTG 825 consensus_7941#1 ACAAAACATAAAACGAATGTATGTATGTCTGTTTTATGTTTGA--TGTAAAATGTATGTG 790 *** ** * * * ****** * ** *** **** ** ** ** ** consensus_7941#0 GCCCGTCCCTTTGCTTGTTGGATTGGAGATGGGTTTAGTAGATTGTGTGCAGTAGTAGCA 885 consensus_7941#1 GAA-------TAATATGTGTGACACACAACAAGCATGGAAAATTGTAAG-GGGAACAGCA 842 * * *** ** * * * * * ***** * * * **** consensus_7941#0 GAAGAAGGAGGGAGGAGGAGGTGACAGTGGTGAAATTGCAAACAATCCCTTCTATCATCT 945 consensus_7941#1 AAACCAGCAAAACACATAAAACGAAAACAAA----------------------------- 873 ** ** * * * ** * consensus_7941#0 CTCTCTCTCCTGCGACTAG 964 consensus_7941#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||