These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 825 fasta sequence [CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG--AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG] [+] EMBL BM602187 [CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATCAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACG ] [+] EMBL CNS097PP [ GGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAAAATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCATGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAA GCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAATAAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATAC ] [+] EMBL BM631895 [ AAAAGAGGGAAGTATGCAAACGTGCGCACAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCCGCGCATATGACCGAAGGCATGGAAGAAGC ] [+] EMBL BM605733 [ ccgCCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGGAAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTAT ] [+] EMBL BM595210 [ ccgGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG] consensusID : consensus_7945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [CCGCCCACGCGTCCGGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAATCGAGATGGTTCCATCAATTTTCTAC] [+] EMBL BM597057 [CCGCCCACGCGTCCGGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAATCGAGATGGTTCCATCAATTTTCTAC] [+] EMBL BM588193 [ AAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCGAAAGTAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAATACTATCTTGCAATTGTCATCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTATCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCACAGGCAA ] consensusID : consensus_7945#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CCGCCCACGCGTCCGCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATTAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA] [+] EMBL BM604112 [CCGCCCACGCGTCCGCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATTAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7945#0 ---CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAA 57 consensus_7945#1 CCGCCCACGCGTCCG-GGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAA 59 consensus_7945#2 ------------------------------------------------------------ consensus_7945#0 TATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGG 117 consensus_7945#1 TATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGG 119 consensus_7945#2 ------------------------------------------------------------ consensus_7945#0 AAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAG 177 consensus_7945#1 AAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAG 179 consensus_7945#2 ------------------------------------CCGCCCACG---CGTCCGCCCAAG 21 *** ** ** * ****** consensus_7945#0 CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATG 237 consensus_7945#1 CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATG 239 consensus_7945#2 CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATG 81 ************************************************** ********* consensus_7945#0 GAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGA 297 consensus_7945#1 GAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGA 299 consensus_7945#2 GAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGA 141 *************************** ************************* ****** consensus_7945#0 TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATA 357 consensus_7945#1 TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATA 359 consensus_7945#2 TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATT 201 *********************************************************** consensus_7945#0 AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 417 consensus_7945#1 AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 419 consensus_7945#2 AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 261 ************************************************************ consensus_7945#0 TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 477 consensus_7945#1 TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 479 consensus_7945#2 TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 321 ************************************************************ consensus_7945#0 GATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAA 537 consensus_7945#1 GATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAA 539 consensus_7945#2 GATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAA 381 ******************************** *************************** consensus_7945#0 AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAAT 597 consensus_7945#1 AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAAT 599 consensus_7945#2 AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAAT 441 ************************************************ *********** consensus_7945#0 CGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAA 657 consensus_7945#1 CGAGATGGTTCCATCAATTTTCTAC----------------------------------- 624 consensus_7945#2 CGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA------------------------ 477 ************************* consensus_7945#0 GTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAG 717 consensus_7945#1 ------------------------------------------------------------ consensus_7945#2 ------------------------------------------------------------ consensus_7945#0 TTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAG 777 consensus_7945#1 ------------------------------------------------------------ consensus_7945#2 ------------------------------------------------------------ consensus_7945#0 CAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG 825 consensus_7945#1 ------------------------------------------------ consensus_7945#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||