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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 825 fasta sequence
[CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG--AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG]
[+] EMBL BM602187 [CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATCAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACG ]
[+] EMBL CNS097PP [ GGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAAAATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCATGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAA GCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAATAAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATAC ]
[+] EMBL BM631895 [ AAAAGAGGGAAGTATGCAAACGTGCGCACAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCCGCGCATATGACCGAAGGCATGGAAGAAGC ]
[+] EMBL BM605733 [ ccgCCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGGAAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTAT ]
[+] EMBL BM595210 [ ccgGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG]
consensusID : consensus_7945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[CCGCCCACGCGTCCGGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAATCGAGATGGTTCCATCAATTTTCTAC]
[+] EMBL BM597057 [CCGCCCACGCGTCCGGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAATCGAGATGGTTCCATCAATTTTCTAC]
[+] EMBL BM588193 [ AAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCGAAAGTAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAATACTATCTTGCAATTGTCATCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTATCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCACAGGCAA ]
consensusID : consensus_7945#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[CCGCCCACGCGTCCGCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATTAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA]
[+] EMBL BM604112 [CCGCCCACGCGTCCGCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATTAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7945#0 ---CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAA 57
consensus_7945#1 CCGCCCACGCGTCCG-GGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAA 59
consensus_7945#2 ------------------------------------------------------------
consensus_7945#0 TATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGG 117
consensus_7945#1 TATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGG 119
consensus_7945#2 ------------------------------------------------------------
consensus_7945#0 AAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAG 177
consensus_7945#1 AAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAG 179
consensus_7945#2 ------------------------------------CCGCCCACG---CGTCCGCCCAAG 21
*** ** ** * ******
consensus_7945#0 CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATG 237
consensus_7945#1 CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATG 239
consensus_7945#2 CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATG 81
************************************************** *********
consensus_7945#0 GAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGA 297
consensus_7945#1 GAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGA 299
consensus_7945#2 GAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGA 141
*************************** ************************* ******
consensus_7945#0 TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATA 357
consensus_7945#1 TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATA 359
consensus_7945#2 TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATT 201
***********************************************************
consensus_7945#0 AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 417
consensus_7945#1 AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 419
consensus_7945#2 AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 261
************************************************************
consensus_7945#0 TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 477
consensus_7945#1 TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 479
consensus_7945#2 TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 321
************************************************************
consensus_7945#0 GATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAA 537
consensus_7945#1 GATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAA 539
consensus_7945#2 GATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAA 381
******************************** ***************************
consensus_7945#0 AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAAT 597
consensus_7945#1 AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAAT 599
consensus_7945#2 AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAAT 441
************************************************ ***********
consensus_7945#0 CGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAA 657
consensus_7945#1 CGAGATGGTTCCATCAATTTTCTAC----------------------------------- 624
consensus_7945#2 CGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA------------------------ 477
*************************
consensus_7945#0 GTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAG 717
consensus_7945#1 ------------------------------------------------------------
consensus_7945#2 ------------------------------------------------------------
consensus_7945#0 TTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAG 777
consensus_7945#1 ------------------------------------------------------------
consensus_7945#2 ------------------------------------------------------------
consensus_7945#0 CAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG 825
consensus_7945#1 ------------------------------------------------
consensus_7945#2 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||