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Anopheles gambiae
cluster # 7945 cluster # 7945       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7945#0 length = 825 sequences # 5  
consensus_7945#1 length = 624 sequences # 2  
consensus_7945#2 length = 477 sequences # 1  

consensusID : consensus_7945#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 825
fasta sequence
                              [CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG--AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG]

[+] EMBL BM602187             [CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATCAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG  AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACG                                                                                                                                                                                             ]
[+] EMBL CNS097PP             [             GGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAAAATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCATGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAA GCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG  AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAATAAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATAC         ]
[+] EMBL BM631895             [                                                                                                            AAAAGAGGGAAGTATGCAAACGTGCGCACAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCCGCGCATATGACCGAAGGCATGGAAGAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM605733             [                                                                                                                                                                                                                                                                                                                                            ccgCCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGGAAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTAT                                                                                                                                                                    ]
[+] EMBL BM595210             [                                                                                                                                                                                                                                                                                                                                                                           ccgGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTG  AAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG]


>consensus_7945#0 CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAATAT TTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAG TATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCAT AAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAA GAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTA TTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAG GATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTT GACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGAT GAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAAAT CCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGA GATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAAGTA TTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAGTTG AAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAGCAA TTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG



consensusID : consensus_7945#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence
                              [CCGCCCACGCGTCCGGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAATCGAGATGGTTCCATCAATTTTCTAC]

[+] EMBL BM597057             [CCGCCCACGCGTCCGGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAATATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAATCGAGATGGTTCCATCAATTTTCTAC]
[+] EMBL BM588193             [                                                                                                  AAAATTATGTCTAAAAGAGGGAAGTATGCAAACGTGCGCGAAAGTAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGCATAAAGCTCGCTCCAATAATACTATCTTGCAATTGTCATCAGATATGACTGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTATCCACCAAGAACACGTGAACCGATTATTGCCAATAAAAGTCACAGGCAA                                                                                                                                                                                                                                                                                                           ]


>consensus_7945#1 CCGCCCACGCGTCCGGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAAT ATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGGA AGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAGC ATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATGG AAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGAT TATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATAA AGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATAT TTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTG ATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAAA ATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAATC GAGATGGTTCCATCAATTTTCTAC



consensusID : consensus_7945#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence
                              [CCGCCCACGCGTCCGCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATTAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA]

[+] EMBL BM604112             [CCGCCCACGCGTCCGCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATTAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA]


>consensus_7945#2 CCGCCCACGCGTCCGCCCAAGCATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCA GCAGATATGACCGAAGGCATGGAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGC CACCAAGAACACGTTAACCGATTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAAC CGAACTGCTCCTAAGCAGATTAAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAAC AAACAGTCTGCAGAAGATATATTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTG GCCGAAATTTTGCTTAAACGTGATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACG ACTTGTGCGGCAATACTTGAAAATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTA GATCTATTAAACGAAGTAAATCGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7945#0      ---CCGAAACTTATGTGGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTTGTTAAATAA 57
consensus_7945#1      CCGCCCACGCGTCCG-GGTAAACAAACGTTTACCGGTTTCCTCTTCCAGTCGTTAAATAA 59
consensus_7945#2      ------------------------------------------------------------
                                                                                  

consensus_7945#0      TATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGG 117
consensus_7945#1      TATTTTTGTGCTCAGGCGGCAATGCCAAGAAACCAAACTAAAATTATGTCTAAAAGAGGG 119
consensus_7945#2      ------------------------------------------------------------
                                                                                  

consensus_7945#0      AAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAG 177
consensus_7945#1      AAGTATGCAAACGTGCGCAAAAGAAAAATGAGCAAGCCGGTCATAGATGGTACCCCCAAG 179
consensus_7945#2      ------------------------------------CCGCCCACG---CGTCCGCCCAAG 21
                                                          ***  **      ** * ******

consensus_7945#0      CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATG 237
consensus_7945#1      CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACTGAAGGCATG 239
consensus_7945#2      CATAAAGCTCGCTCCAATAAAACTATCTTGCAATTGTCAGCAGATATGACCGAAGGCATG 81
                      ************************************************** *********

consensus_7945#0      GAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGA 297
consensus_7945#1      GAAGAAGCGTATCGTAAAACAGTACTCTGTGAAATTAGCCACCAAGAACACGTGAACCGA 299
consensus_7945#2      GAAGAAGCGTATCGTAAAACAGTACTCAGTGAAATTAGCCACCAAGAACACGTTAACCGA 141
                      *************************** ************************* ******

consensus_7945#0      TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATA 357
consensus_7945#1      TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATA 359
consensus_7945#2      TTATTGCCAATAAAAGTCAAAGGCAAAGGGCTGATAAACCGAACTGCTCCTAAGCAGATT 201
                      *********************************************************** 

consensus_7945#0      AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 417
consensus_7945#1      AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 419
consensus_7945#2      AAGGATGATGCTAGCGTATGCTCTTCTGATCTTGATAACAAACAGTCTGCAGAAGATATA 261
                      ************************************************************

consensus_7945#0      TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 477
consensus_7945#1      TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 479
consensus_7945#2      TTTGACGATAAGCCGAATGAACAGCAAGTAGTTTCATTGGCCGAAATTTTGCTTAAACGT 321
                      ************************************************************

consensus_7945#0      GATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAA 537
consensus_7945#1      GATGAGGAAATAAGAGAAAAACAATTTTTCATTGGAACGACTTGTGCGGCAATACTTGAA 539
consensus_7945#2      GATGAGGAAATAAGAGAAAAACAATTTTTCATCGGAACGACTTGTGCGGCAATACTTGAA 381
                      ******************************** ***************************

consensus_7945#0      AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAAT 597
consensus_7945#1      AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTACACGAAGTAAAT 599
consensus_7945#2      AATCCGGAAGCAAGAATTGAGAACATTGGTGTGCTCTTAGATCTATTAAACGAAGTAAAT 441
                      ************************************************ ***********

consensus_7945#0      CGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAAACGGCAATGATATCCCTCGTAGAA 657
consensus_7945#1      CGAGATGGTTCCATCAATTTTCTAC----------------------------------- 624
consensus_7945#2      CGAGATGGTTCCATCAATTTTCTACCTGTTAGAAAA------------------------ 477
                      *************************                                   

consensus_7945#0      GTATTTAAAGATATTGTTCCAGAATATCGGATTGGCATTGTTGACAAAGAACATCAAAAG 717
consensus_7945#1      ------------------------------------------------------------
consensus_7945#2      ------------------------------------------------------------
                                                                                  

consensus_7945#0      TTGAAAAAAGATACGCTTGCACGCGTTAATTTTGAGAACAAGCTCTTAACTTACTATAAG 777
consensus_7945#1      ------------------------------------------------------------
consensus_7945#2      ------------------------------------------------------------
                                                                                  

consensus_7945#0      CAATTATTGAAACACATCGAAGGTATCACGAGTAAATACACTAAGAAG 825
consensus_7945#1      ------------------------------------------------
consensus_7945#2      ------------------------------------------------
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)