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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1464 fasta sequence
[CGACGAACACGTTTTGGGCAAGCGATTTCCGATTTTAGACTCATTTATTTTTTCCTTTCTCTGTTCGGTTTACCCTTCATTCCTAGCCTAATTGCTGCTCGTCCTGCTCTTTCTCGGCCACCAGCTCCGGGTGCGTTTTGCGCAAGTGCATATTTAGTAGCGATTTGTAGCGGTACGATCTGCCACACAGGTCACACTTAAACAGCACACCGCTGTGCGTGCGTTCGTGGATGTTGCGCGCGTGTCTACTTTTGAACCGCTTCGGACACTTGCCGCACGCATACGGTTGCTCGTCCGAGTGGACGCTCTTGTGCACTCGCAGCGCCCGTCTCACTTTGAACTGTTTGCCACAGATGTCCCACTCCAAGGGCCGTACATTCGAGTGATTGCGCTTCATATGGTCGTGCAGGGCCGATTTTTGATTAAACTGCTTTGGGCACAGCTTACATTTTGCCCGCTCACCGATGCCGTGTTGGGCGAGCTACGGAACGAGACCAAAAATCATGTCGTTTACAGCCACACTTGCATTGCGATTGTGCTCCAGCCTACTAGACGCTACGTACCATGTGCGATTTGAGCGAGTTGCTACTCGTGTAA-CCTTGCCGCACAGTTTGCACCGTTCGCAGAGCAGCTTCAGATGCACCGCACGCACGT-CTTGACCAGATTGCCTTTGTTGGTCATGGCGATCGGACAGTGCGGACAGGCGTGAACCCGCGCCTGCTTGTGCACCGAGTTGGTATGCACGGACAGGCTGGTCACTAGCTTCCCGCATATGGTACACAGCTGCTGCTGTTTGTACGACTTTCTCGTGCGCATCGTAC-AAATTTCGCT-CCCTTGTGATGAACTGTCGTGATGCTCGGC-CGTGCTCGCTGCTGC-CG-CCTGCTGGACCACTGACCATTTGTACAGGATTGGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGATCGATGTAGTTCGCCGAGTAGTCGGCCGGCTCGACGTACGAAGTAT-CGCTATCACTTTCCTCTTCCTGGTGCGTGTATGCGTACTCCTGCTGACCCGTACCGTCGGCGCGCTTGAAAACCGATTCATCTTCCTCTTCATACACTTGCTCATACTCATAATCGTCATCGTCGTCATCGTCGTCAGTGGCCGCTTGCTGGGAATCGCTTTTTTCACCAACAGCCTCTACGGATTGTAACCCCTCCGTACTAGCGATCAGTACACCGGAAAGCACTTCAAAGAGGGCATCATTGTTGAGGCAGCATTGGCGAAATTTGGCCGACACTGTCAGTTTCTGTGTGCACGCGAAACAGATCGCGTATGAGATGTTTCCCTTTACGTTGATCTTAATTCCGGTGAATCGTTCTACATCTTCTATCTTAAGCAAGGTGTCCAGCTTACCGGTTACCGGTCTCAGCAACTGCTCGTCCTGGCACAAGCACAATCGGCAGATATTGTGTATTTC]
[+] EMBL CNS08T45 [CGACGAACACGTTTTGGGCAAGCGATTTCCGATTTTAGACTCATTTATTTTTTCCTTTCTCTGTTCGGTTTACCCTTCATTCCTAGCCTAATTGCTGCTCGTCCTGCTCTTTCTCGGCCACCAGCTCCGGGTGCGTTTTGCGCAAGTGCATATTTAGTAGCGATTTGTAGCGGTACGATCTGCCACACAGGTCACACTTAAACAGCACACCGCTGTGCGTGCGTTCGTGGATGTTGCGCGCGTGTCTACTTTTGAACCGCTTCGGACACTTGCCGCACGCATACGGTTGCTCGTCCGAGTGGACGCTCTTGTGCACTCGCAGCGCCCGTCTCACTTTGAACTGTTTGCCACAGATGTCCCACTCCAAGGGCCGTACATTCGAGTGATTGCGCTTCATATGGTCGTGCAGGGCCGATTTTTGATTAAACTGCTTTGGGCACAGCTTACATTTTGCCCGCTCACCGATGCCGTGTTGGGCGAGCTACGGAACGAGACCAAAAATCATGTCGTTTACAGCCACACTTGCATTGCGATTGTGCTCCAGCCTACTAGACGCTACGTACCATGTGCGATTTGAGCGAGTTGCTACTCGTGTAA CCTTGCCGCACAGTTTGCACCGTTCGCAGAGCAGCTTCAGATGCACCGCACGCACGT CTTGACCAGATTGCCTTTGTTGGTCATGGCGATCGGACAGTGCGGACAGGCGTGAACCCGCGCCTGCTTGTGCACCGAGTTGGTATGCACGGACAGGCTGGTCACTAGCTTCCCGCATATGGTACACAGCTGCTGCTGTTTGTACGACTTTCTCGTGCGCATCGTAC AAATTTCGCT CCCTTGTGATGAACTGTCGTGATGCTCGGC CGTGCTCGCTGCTGC CG CCTGCTGGACCACTGACCATTTGTACAGGATTGGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGATCGATGTAGTTCGCCGAGTAGTCGGCCGGCTCGACGTACGAA TATCCGCTA ]
[-] EMBL CNS08T44 [ ACA TTTGCCCGCTCACCGATGCCGTGTTGGGCGAGCTACGGAACGAGACCAAAAATCATGTCGTTTACAGCCACACTTGCATTGCGATTGTGCTCCAGCCTACTAGACGCTACGTACCATGTGCGATTTGAGCGAGTTGCTACTCGTGTAACCCTTGCCGCACAGTTTGCACCGTTCGCAGAGCAGCTTCAGATGCACCGCACGCACGTGCTTGACCAGATTGCCTTTGTTGGTCATGGCGATCGGACAGTGCGGACAGGCGTGAACCCGCGCCTGCTTGTGCACCGAGTTGGTATGCACGGACAGGCTGGTCACTAGCTTCCCGCATATGGTACACAGCTGCTGCTGTTTGTACGACTTTCTCGTGCGCATCGTAC AAATTTCGCT CCCTTGTGATGAACTGTCGTGATGCTCGGC CGTGCTCGCTGCTGC CG CCTGCTGGACCACTGACCATTTGTACAGGATTGGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGATCGATGTAGTTCGCCGAGTAGTCGGCCGGCTCGACGTACGAAGTAT CGCTATCACTTTCCTCGGCCTGGTGCGTGTATGCGTACTCCTGCTGACCCGTACCGTCGGCGCGCTTGAAAACCGATTCATCTTCCTCTTCATA ]
[-] EMBL BM588435 [ CGACTTTCTCGTGCGCATCGTACAAAATTTCGCT CGCCTGTGATGAACTGTCGTCATGCTCGAC CGTGCTCGCAGCTGC CG CCCGCTGGACCACTGACCATTTGTATAGGATTGGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGATCGATGTAGTTCGCCGAGTAGTCGGCCGGCTCGACGTACGAAGTAT CGCTATCACTTTCCTCTTCCTGGTGCGTGTATGAGTACTCCTGCTGGCCCGTACCGTCGGCGCGCTTGAACACCGATTCATCTTCCTCTTCATACACTTGCTCATACTCATAATCGTCATCGTCGTCATCGTCGTCAGTGGCCGCTTGCTGGGAATCGCTTTTTTCACCAACAGCCTCTACGGATTGTAACCCCTCCGTACTAGCGATCAGTACACCGGAAAGCACTTCAAAGAGGGCATCATTGTTGAGGCAGCATTGGCGAAATTTGGCCGACACTGTCAGTTTCTGTGTGCACGCGAAACAGATCGCGTATGAGATGTTTCCCTTTACGTTGATCTTAATTCCGGTGAATCGTTCTACATCTTCTATCTTAAGCAAGGTGTCCAGCTTACCGG ]
[-] EMBL CNS093L1 [ AC AAATTTCGCTCCCCTTGTGATGAACTGTCGTGATGCTCGGCGCGTGCTCGCTGCTGCGCGCCCTGCTGGACCACTGACCATTTGTACAGGATTGGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGATCGATGTAGTTCGCCGAGTAGTCGGCCGGCTCGACGTACGAAGTAT CGCTATCACTTTCCTCTTCCTGGTGCGTGTATGCGTACTCCTGCTGACCCGTACCGTCGGCGCGCTTGAAAACCGATTCATCTTCCTCTTCATACACTTGCTCATACTCATAATCGTCATCGTCGTCATCGTCGTCAGTGGCCGTTTGCTGAGAATCGCTTTTTTCACCAACAGCCTCTTCGGATTGTAACCCCTCCGTACTAGCGATCAGTACACCGGAAAGCACTTGAAAGAGGGCATCATTGTTGAGGCAGCATCGGCGAAATTTGGCCGACACTGTCAGTTTCTGTGTGCACGCGAAACAGATCGCGTATGAGATGTTTCCCTTTACGTTGATCTTAATTCCAGTGAATCTTTCTACATCTTCAATCTTAAGCAAGGTGTCCAGCTTACTCGTTACCGGTCTCAGCAACTGCTCGTCCTGGCACAAGCACAATCGGCAGATATTGTGTATTTC]
[-] EMBL CNS09ALH [ GCT CCCTTGTGATGAACTGTCGTGATGCTCGGC CGTGCTCGCTG TGC CG CCTGCTGGACCACTGACCATTTGTACAGGATTGGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGAT ]
consensusID : consensus_7960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 882 fasta sequence
[TTTGGGCAGCGATTTCCGATTTTAGACTCATTTATTTTTTCCTTTCTCTGTTCGGTTTACCCTTCATTCCTAGCCTAATTGCTGCTCGTCCTGCTCTTTCTCGGCCACCAGCTCCGGGTGCGTTTTGCGCAAGTGCATATTTAGTAGCGATTTGTAGCGGTACGATCTGCCACACAGGTCACACTTAAACAGCACACCGCTGTGCGTGCGTTCGTGGATGTTGCGCGCGTGTCTACTTTTGAACCGCTTCGGACACTTGCCGCACGCATACGGTTGCTCGTCCGAGTGGACGCTCTTGTGCACTCGCAGCGCCCGTCTCACTTTGAACTGTTTGCCACAGATGTCACACTCCAAGGGCCGTACATTCGAGTGAATGCGCTTCATATGGTCGTGCAGGGCCGATTTTTGATTAAACTGCTTTGGGCACAGCTTACATTTTGCCCGCTCACCGATGCCGTGTTGGGCGAGCATGTGCGATTTGAGCGAGTTGCTACTCGTGTAACCCTTGCCGCACAGTTTGCACCGTTCGCAGAGCAGCTTCAGATGCACCGCACGCACGTCTTGACCAGATTGCCTTTGTTGGTCATGGCGATCGGACAGTGCGGACAGGCGTGAACCCGCGCCTGCTTGTGCACCGAGTTGGTATGCACGGACAGGCTGGTCACTAGCTTCCCGCATATGGTACACAGCTGCTGCTGTTTGTACGACTTTCTCGTGCGCATCGTACAAATTTCGCTCCCTTGTGATGAACTGTCGTGATGCTCGGCCGTGCTCGCTGCTGCCGCCTGCTGGACCACTGACCATTTGTACAGGATTCGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGATCGATGTAGTTCGCC]
[+] EMBL CNS093L2 [TTTGGGCAGCGATTTCCGATTTTAGACTCATTTATTTTTTCCTTTCTCTGTTCGGTTTACCCTTCATTCCTAGCCTAATTGCTGCTCGTCCTGCTCTTTCTCGGCCACCAGCTCCGGGTGCGTTTTGCGCAAGTGCATATTTAGTAGCGATTTGTAGCGGTACGATCTGCCACACAGGTCACACTTAAACAGCACACCGCTGTGCGTGCGTTCGTGGATGTTGCGCGCGTGTCTACTTTTGAACCGCTTCGGACACTTGCCGCACGCATACGGTTGCTCGTCCGAGTGGACGCTCTTGTGCACTCGCAGCGCCCGTCTCACTTTGAACTGTTTGCCACAGATGTCACACTCCAAGGGCCGTACATTCGAGTGAATGCGCTTCATATGGTCGTGCAGGGCCGATTTTTGATTAAACTGCTTTGGGCACAGCTTACATTTTGCCCGCTCACCGATGCCGTGTTGGGCGAGCATGTGCGATTTGAGCGAGTTGCTACTCGTGTAACCCTTGCCGCACAGTTTGCACCGTTCGCAGAGCAGCTTCAGATGCACCGCACGCACGTCTTGACCAGATTGCCTTTGTTGGTCATGGCGATCGGACAGTGCGGACAGGCGTGAACCCGCGCCTGCTTGTGCACCGAGTTGGTATGCACGGACAGGCTGGTCACTAGCTTCCCGCATATGGTACACAGCTGCTGCTGTTTGTACGACTTTCTCGTGCGCATCGTACAAATTTCGCTCCCTTGTGATGAACTGTCGTGATGCTCGGCCGTGCTCGCTGCTGCCGCCTGCTGGACCACTGACCATTTGTACAGGATTCGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGGGATCGATGTAGTTCGCC]
[+] EMBL CNS09ALI [ CACACTCCAAGGGCCGTACATTCGAGTGAATGCGCTTCATATGGTCGTGCAGGGCCGATTTTTGATTAAACTGCTTTGGGCACAGCTTACATTTTGCCCGCTCACCGATGCCGTGTTGGGCGAGCATGTGCGATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7960#0 CGACGAACACGTTTTGGGCAAGCGATTTCCGATTTTAGACTCATTTATTTTTTCCTTTCT 60
consensus_7960#1 ------------TTTGGGCA-GCGATTTCCGATTTTAGACTCATTTATTTTTTCCTTTCT 47
******** ***************************************
consensus_7960#0 CTGTTCGGTTTACCCTTCATTCCTAGCCTAATTGCTGCTCGTCCTGCTCTTTCTCGGCCA 120
consensus_7960#1 CTGTTCGGTTTACCCTTCATTCCTAGCCTAATTGCTGCTCGTCCTGCTCTTTCTCGGCCA 107
************************************************************
consensus_7960#0 CCAGCTCCGGGTGCGTTTTGCGCAAGTGCATATTTAGTAGCGATTTGTAGCGGTACGATC 180
consensus_7960#1 CCAGCTCCGGGTGCGTTTTGCGCAAGTGCATATTTAGTAGCGATTTGTAGCGGTACGATC 167
************************************************************
consensus_7960#0 TGCCACACAGGTCACACTTAAACAGCACACCGCTGTGCGTGCGTTCGTGGATGTTGCGCG 240
consensus_7960#1 TGCCACACAGGTCACACTTAAACAGCACACCGCTGTGCGTGCGTTCGTGGATGTTGCGCG 227
************************************************************
consensus_7960#0 CGTGTCTACTTTTGAACCGCTTCGGACACTTGCCGCACGCATACGGTTGCTCGTCCGAGT 300
consensus_7960#1 CGTGTCTACTTTTGAACCGCTTCGGACACTTGCCGCACGCATACGGTTGCTCGTCCGAGT 287
************************************************************
consensus_7960#0 GGACGCTCTTGTGCACTCGCAGCGCCCGTCTCACTTTGAACTGTTTGCCACAGATGTCCC 360
consensus_7960#1 GGACGCTCTTGTGCACTCGCAGCGCCCGTCTCACTTTGAACTGTTTGCCACAGATGTCAC 347
********************************************************** *
consensus_7960#0 ACTCCAAGGGCCGTACATTCGAGTGATTGCGCTTCATATGGTCGTGCAGGGCCGATTTTT 420
consensus_7960#1 ACTCCAAGGGCCGTACATTCGAGTGAATGCGCTTCATATGGTCGTGCAGGGCCGATTTTT 407
************************** *********************************
consensus_7960#0 GATTAAACTGCTTTGGGCACAGCTTACATTTTGCCCGCTCACCGATGCCGTGTTGGGCGA 480
consensus_7960#1 GATTAAACTGCTTTGGGCACAGCTTACATTTTGCCCGCTCACCGATGCCGTGTTGGGCGA 467
************************************************************
consensus_7960#0 GCTACGGAACGAGACCAAAAATCATGTCGTTTACAGCCACACTTGCATTGCGATTGTGCT 540
consensus_7960#1 GC---------------------------------------------------------- 469
**
consensus_7960#0 CCAGCCTACTAGACGCTACGTACCATGTGCGATTTGAGCGAGTTGCTACTCGTGTAACC- 599
consensus_7960#1 ------------------------ATGTGCGATTTGAGCGAGTTGCTACTCGTGTAACCC 505
***********************************
consensus_7960#0 TTGCCGCACAGTTTGCACCGTTCGCAGAGCAGCTTCAGATGCACCGCACGCACGTCTTGA 659
consensus_7960#1 TTGCCGCACAGTTTGCACCGTTCGCAGAGCAGCTTCAGATGCACCGCACGCACGTCTTGA 565
************************************************************
consensus_7960#0 CCAGATTGCCTTTGTTGGTCATGGCGATCGGACAGTGCGGACAGGCGTGAACCCGCGCCT 719
consensus_7960#1 CCAGATTGCCTTTGTTGGTCATGGCGATCGGACAGTGCGGACAGGCGTGAACCCGCGCCT 625
************************************************************
consensus_7960#0 GCTTGTGCACCGAGTTGGTATGCACGGACAGGCTGGTCACTAGCTTCCCGCATATGGTAC 779
consensus_7960#1 GCTTGTGCACCGAGTTGGTATGCACGGACAGGCTGGTCACTAGCTTCCCGCATATGGTAC 685
************************************************************
consensus_7960#0 ACAGCTGCTGCTGTTTGTACGACTTTCTCGTGCGCATCGTACAAATTTCGCTCCCTTGTG 839
consensus_7960#1 ACAGCTGCTGCTGTTTGTACGACTTTCTCGTGCGCATCGTACAAATTTCGCTCCCTTGTG 745
************************************************************
consensus_7960#0 ATGAACTGTCGTGATGCTCGGCCGTGCTCGCTGCTGCCGCCTGCTGGACCACTGACCATT 899
consensus_7960#1 ATGAACTGTCGTGATGCTCGGCCGTGCTCGCTGCTGCCGCCTGCTGGACCACTGACCATT 805
************************************************************
consensus_7960#0 TGTACAGGATTGGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGG 959
consensus_7960#1 TGTACAGGATTCGCCCGGCACCAGGGTTGCCGCACTCATCGCTGTCGGACTGTGTGCCGG 865
*********** ************************************************
consensus_7960#0 GATCGATGTAGTTCGCCGAGTAGTCGGCCGGCTCGACGTACGAAGTATCGCTATCACTTT 1019
consensus_7960#1 GATCGATGTAGTTCGCC------------------------------------------- 882
*****************
consensus_7960#0 CCTCTTCCTGGTGCGTGTATGCGTACTCCTGCTGACCCGTACCGTCGGCGCGCTTGAAAA 1079
consensus_7960#1 ------------------------------------------------------------
consensus_7960#0 CCGATTCATCTTCCTCTTCATACACTTGCTCATACTCATAATCGTCATCGTCGTCATCGT 1139
consensus_7960#1 ------------------------------------------------------------
consensus_7960#0 CGTCAGTGGCCGCTTGCTGGGAATCGCTTTTTTCACCAACAGCCTCTACGGATTGTAACC 1199
consensus_7960#1 ------------------------------------------------------------
consensus_7960#0 CCTCCGTACTAGCGATCAGTACACCGGAAAGCACTTCAAAGAGGGCATCATTGTTGAGGC 1259
consensus_7960#1 ------------------------------------------------------------
consensus_7960#0 AGCATTGGCGAAATTTGGCCGACACTGTCAGTTTCTGTGTGCACGCGAAACAGATCGCGT 1319
consensus_7960#1 ------------------------------------------------------------
consensus_7960#0 ATGAGATGTTTCCCTTTACGTTGATCTTAATTCCGGTGAATCGTTCTACATCTTCTATCT 1379
consensus_7960#1 ------------------------------------------------------------
consensus_7960#0 TAAGCAAGGTGTCCAGCTTACCGGTTACCGGTCTCAGCAACTGCTCGTCCTGGCACAAGC 1439
consensus_7960#1 ------------------------------------------------------------
consensus_7960#0 ACAATCGGCAGATATTGTGTATTTC 1464
consensus_7960#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||