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Anopheles gambiae
cluster # 7970 cluster # 7970       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7970#0 length = 1065 sequences # 1  
consensus_7970#1 length = 932 sequences # 2  
consensus_7970#2 length = 918 sequences # 4  
consensus_7970#3 length = 712 sequences # 1  

consensusID : consensus_7970#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1065
fasta sequence
                              [GAATCCCCCGNGGTTAAATAGATCATTAATTAGCTGATTTAAATTGTGTNGGTGTGTTTTTTAATGCTTCAAAATGGTTTGCTTGTTTGACGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACTGCTAATCAATCAGCTCTCATACTTTTGCTACACGACATTCTCACCTACNGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATATCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGACTAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTTGCCTAACTNGATGAAATCATCTGGCTACCCCGCATACGGGCGAACGCTACTTCTTGGCTCGACGACGACAACGCGACATATCAAACCCCGNTCCACGATACCAGCGCCCAGACAAGCTGGCGANACGCAGTTACAGACAANTGTGTGTCCACAATCCCACCCCGATCCGGAAAGCATGGNGGCCTGGGCAAACGGGAAACCGNAAGCCCCGGACNGGGTNCACGGGACACCGAAAAATGGTTCCTCACTCGGGACAACCACCGTGCAAACGCCCACCANACAACTCTGNGCCGCACCCTGCCNACACCNTGCGCACANCGGCAGCAAAAACCCCAAAAACCGCNACAAAACCANAGAGNTGCTGAGAAAGGCGTAAANACCAATGTGCNTGAGGAAAAGCCNCNANNACGGGCAATTGTNACATAAACCAACCNAACCCCCGGGGTACTCGGTCCGCAACNTGTACTCACAANACTNCACTGCCAANCCCGCCCGACNCANCCNCCCCNACACACAACACACCGTTNGNCGACGCAACCAAAGGNACAAGGCGCAACCA]

[+] EMBL AL930575             [GAATCCCCCGNGGTTAAATAGATCATTAATTAGCTGATTTAAATTGTGTNGGTGTGTTTTTTAATGCTTCAAAATGGTTTGCTTGTTTGACGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACTGCTAATCAATCAGCTCTCATACTTTTGCTACACGACATTCTCACCTACNGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATATCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGACTAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTTGCCTAACTNGATGAAATCATCTGGCTACCCCGCATACGGGCGAACGCTACTTCTTGGCTCGACGACGACAACGCGACATATCAAACCCCGNTCCACGATACCAGCGCCCAGACAAGCTGGCGANACGCAGTTACAGACAANTGTGTGTCCACAATCCCACCCCGATCCGGAAAGCATGGNGGCCTGGGCAAACGGGAAACCGNAAGCCCCGGACNGGGTNCACGGGACACCGAAAAATGGTTCCTCACTCGGGACAACCACCGTGCAAACGCCCACCANACAACTCTGNGCCGCACCCTGCCNACACCNTGCGCACANCGGCAGCAAAAACCCCAAAAACCGCNACAAAACCANAGAGNTGCTGAGAAAGGCGTAAANACCAATGTGCNTGAGGAAAAGCCNCNANNACGGGCAATTGTNACATAAACCAACCNAACCCCCGGGGTACTCGGTCCGCAACNTGTACTCACAANACTNCACTGCCAANCCCGCCCGACNCANCCNCCCCNACACACAACACACCGTTNGNCGACGCAACCAAAGGNACAAGGCGCAACCA]


>consensus_7970#0 GAATCCCCCGNGGTTAAATAGATCATTAATTAGCTGATTTAAATTGTGTNGGTGTGTTTT TTAATGCTTCAAAATGGTTTGCTTGTTTGACGAGTTGTGAAAGCAACAGGCAAACGGCGA AGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCG AACAGATGCGCAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAG ATTTCACCACAACTGCTAATCAATCAGCTCTCATACTTTTGCTACACGACATTCTCACCT ACNGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATAT CATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGACTAGAAAGCTGCAAAGAGT TCCTGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGAC CCGATCATTCAGCACTTCGAACGCTTGCCTAACTNGATGAAATCATCTGGCTACCCCGCA TACGGGCGAACGCTACTTCTTGGCTCGACGACGACAACGCGACATATCAAACCCCGNTCC ACGATACCAGCGCCCAGACAAGCTGGCGANACGCAGTTACAGACAANTGTGTGTCCACAA TCCCACCCCGATCCGGAAAGCATGGNGGCCTGGGCAAACGGGAAACCGNAAGCCCCGGAC NGGGTNCACGGGACACCGAAAAATGGTTCCTCACTCGGGACAACCACCGTGCAAACGCCC ACCANACAACTCTGNGCCGCACCCTGCCNACACCNTGCGCACANCGGCAGCAAAAACCCC AAAAACCGCNACAAAACCANAGAGNTGCTGAGAAAGGCGTAAANACCAATGTGCNTGAGG AAAAGCCNCNANNACGGGCAATTGTNACATAAACCAACCNAACCCCCGGGGTACTCGGTC CGCAACNTGTACTCACAANACTNCACTGCCAANCCCGCCCGACNCANCCNCCCCNACACA CAACACACCGTTNGNCGACGCAACCAAAGGNACAAGGCGCAACCA



consensusID : consensus_7970#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 932
fasta sequence
                              [ATTAATTAGTGATTTAAATTGTGTTTGGGTGTTTTTTTAATGCTTCAAAATGGTTTGCTTGTTTGAGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAA-CTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGATAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCATTCAACCCCGTCCACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAAATGTGTGTCCAAAT-CCACCCCGATCGGAAGCATGGTGCTGGAACGGAACGCACCCGACTGTCCGGAGCGAATGTTCTCGTCCGGCAGCACCGTAACGCAGCTAGATTTGTCCGTCCCGCCACGCTGGGAGACGGAGAAAACCATCATGACGCTGCAGCACAGCGTGCTGGGAGCTGCTGAACCATTTGGATTGAGTAAATGCCTTTTGCAGGGATATGCTTGATGAAATCGATTTTTATTTGCTCTTGTTTTTTGTTCAGAAATTTATTTAATAAGAAAAAATGAAGAAATGCGAAAAAGCGATCGGGTGAGTTTTATGTTTGTTTGTGCATGCTGAATAAA]

[+] EMBL CNS08TDO             [ATTAATTAGTGATTTAAATTGTGTTTGGGTGTTTTTTTAATGCTTCAAAATGGTTTGCTTGTTTGAGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAA CTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGATAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCATTCAACCCCGTCCACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAAATGTGTGTCCAAAT CCACCCCGATCGGAAGCATGGTGCTGGAACGGAACGCACCCGACTGTCCGGAGCGAATGTTCTCGTCCGGCAGCACCGTAACGCAGCTAGATTTGTCCGTCCCGCCACGCTGGGAGACGGAGAAAACCATCATGACGCTGCAGCACAGCGTGCTGGGAGCTGCTGAACCATTTGGATTGAGTAAATGCCTTTTGCAGGGATATGCTTGATGAAATCGATTTTTATTTGCTCTTGTTTTTTGTTCAGAAATTTATTTAATAAGAAAAAATGAAGAAATGCGAAAAAGCGATCGGGTGAGTTTTATGTTTGTTTGTGCATGCTGAATAAA]
[-] EMBL CNS08TDP             [                                                                                 CAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAAAAGATGCGCAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTTTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATTCATCCCCCCGCAAACTCGTGAACCCGTCGACGCATCAACGATAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTACTTTTTGCTCGACGACGAAAGCGACCATTCAACCCCGTCCACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAAATGTGTGTCCAAATACCACCCCGATCGGAAGCATGGTGCTGGAACGGAATGCACCCGACTGTCCGGAGCGAATGTTCTCGTCCGGCAGCACCGTAACGCAGCTAGATTTGTCCGTCCCGCCACGCTGGGAGACGGAGAAAACCATCATGACGCTGCAG                                                                                                                                                                                         ]


>consensus_7970#1 ATTAATTAGTGATTTAAATTGTGTTTGGGTGTTTTTTTAATGCTTCAAAATGGTTTGCTT GTTTGAGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCG ATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAACTGGCGAAAAAA CGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAG CTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGACGTCCAC AACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCA TCAACGATAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCGATC GCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGAT GAAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCAT TCAACCCCGTCCACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAAATGTGTGTCC AAATCCACCCCGATCGGAAGCATGGTGCTGGAACGGAACGCACCCGACTGTCCGGAGCGA ATGTTCTCGTCCGGCAGCACCGTAACGCAGCTAGATTTGTCCGTCCCGCCACGCTGGGAG ACGGAGAAAACCATCATGACGCTGCAGCACAGCGTGCTGGGAGCTGCTGAACCATTTGGA TTGAGTAAATGCCTTTTGCAGGGATATGCTTGATGAAATCGATTTTTATTTGCTCTTGTT TTTTGTTCAGAAATTTATTTAATAAGAAAAAATGAAGAAATGCGAAAAAGCGATCGGGTG AGTTTTATGTTTGTTTGTGCATGCTGAATAAA



consensusID : consensus_7970#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 918
fasta sequence
                              [CCGAAAGAACAGAACATAAACAAAGCTACAATGGAGTGCGTTTCTCCCCAAATAGATCATTAATTAGTGATTTAAATTGTGTTTGGGTG-TTTTTTTAATGCTTCAAAATGGTTTGCTTGTTTGAGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGATAGAAAGCTGCAAAGAGTTCC-TGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCATTCAACCCCGTCCACGTACAGCGCCAGACAGCTGGCGAAGGAGTT-AAAGAAATGTGTGTCCAAATCCACCCCGATCGGACGCATGGTGCTGGAACGGAACGCCCCCGACTGTCCGGAGCGAATGTTCTCGTCCGGCAGCACCGTAACACAGCTAGATTTGTCCGTCCCGCCACGCTGGGAGATGGAGAAAACCATCATGACGCTGCAGCACAGCGTGCTGGAAGCTGCTGAACCATTTGGATTGAGTAAATGCCATATGCTGGGATATGCTTGATGAAATCGAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGGGC]

[+] EMBL BM644215             [CCGAAAGAACAGAACATAAACAAAGCTACAATGGAGTGCGTTTCTCCCCAAATAGATCATTAATTAGTGATTTAAATTGTGTTTGGGTG TTTTTTTAATGCTTCAAAATGGTTTGCTTGTTTGAGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGATAGAAAGCTGCAAAGAGTTCC TGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCATTCAACCCCGTCCACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAAGAAATGTGTGTCC AATCCAC                                                                                                                                                                                                                                                           ]
[+] EMBL BM589809             [                  ccgAAAGCTACAATGGAGTGCGTTTCTCCCCAAATAGATCATTAATTAGTGATTTAAATTGTGTTTGGGTG TTTTTTTAATGCTTCAAAATGGTTTGCTTGTTTGAGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGACGTCCACAACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCAACGATAGAAAGCTGCAAAGAGTTCC TGCGCCACGAACAGCTCACCGAAGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCATTCAACCCCGTCCACGTACAGCGCCAGACAGCTGGC                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS08G1Z             [                                                                                      GTGTTTTTTTTTATGCTTCAAAATGGTTTGCTTGTTTGAGAGCTGTGAAAGCAACAGGCAAACGGCAAAGAAAAACCACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCG AAACTGGCGAAAAAACGGCTCTACTGGTGGTGCCAGATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCACATTTGCCCACGACATTTCATTAAAGGTAACTGTGCACCCCTGTGGGATGTCCACAACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCGACGATAGAAAGCTGTAAAGAGTTCC TGCGCCACGAAAAGCTCACCGAAGAATCCATCGCTAACCCACTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCATTCAACCCCGTCCACGTACAGCGCCAGACAGTTGGCGAAGGAGTT AAAGAAATGTGTGTCCAAATCCACCCCGATCGGACGCATGGTGCTGGAACGGAACGCCCCCGACTGTCCGGAGCGAATGTTCTCGTCCGGCAGCACCGTAACACAGCTAGATTTGTCCGTCCCGCCACGCTGGGAGATGGAGAAAACCATCATGACGCTGCAGCACAGCGTGCTGGAAGCTGCTGAACCATTTGGATTGAGTAAATGCCATATGCTGGGATATGCTTGATGAAATCGAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGGGC]
[-] EMBL CNS08G20             [                                                                                                                                            CAGGCAAACGGCAAAGAAAAACCACGAAAATGGGATTCGATTCTTTTCATTCCCCACAACGGACTACACCAGCGGAAAGATGCGAAAGCTGGCGAAAAAACGGCTCCACTGGTGGTGCCAGATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTTACATTTGCCCACGACATTTCATTAAAGGTAACTGTGCACCCCTGTGGGATGTCCACAACCCAAACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCGACGATAGAAAGCTGTAAAGAGTTCCTTGCGCCACGAACAGCTCACCGAAAAATCCATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGGTCGGGCGGACGTACTTTTTGCTCGACGACGAAAGCGACCATTTAACCCCGTCCACGTACAGCGCCAGACAGTTGGCGAAGGAGTT AAAGAAATGTGTGTCCAAATCCACCCCGATCGGACGCATGGTGCTGGAACGGAACGCCCCCCACTGTCCGGAGCGAATGTTCTCGTCCGGCAGCACCGTTACACAGCTAGATTTGTCCGTCCCGCCACGCTGGGAGATGGAGAAAACCATCATGA                                                                                                                        ]


>consensus_7970#2 CCGAAAGAACAGAACATAAACAAAGCTACAATGGAGTGCGTTTCTCCCCAAATAGATCAT TAATTAGTGATTTAAATTGTGTTTGGGTGTTTTTTTAATGCTTCAAAATGGTTTGCTTGT TTGAGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCGAT TCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAAAC GGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGC TTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGACGTCCACA ACCCAGACTGGCTGCCAAGTTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCAT CAACGATAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCGATCG CTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCTGCTAATTGATG AAATCATTGCCTACCCGATCGGGCGAACGTACTTCTTGCTCGACGACGAAAGCGACCATT CAACCCCGTCCACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAAATGTGTGTCCA AATCCACCCCGATCGGACGCATGGTGCTGGAACGGAACGCCCCCGACTGTCCGGAGCGAA TGTTCTCGTCCGGCAGCACCGTAACACAGCTAGATTTGTCCGTCCCGCCACGCTGGGAGA TGGAGAAAACCATCATGACGCTGCAGCACAGCGTGCTGGAAGCTGCTGAACCATTTGGAT TGAGTAAATGCCATATGCTGGGATATGCTTGATGAAATCGAAAAAAAAAAAAAAAAAAAA GGCCAAATGTGCCCGGGC



consensusID : consensus_7970#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence
                              [GATCCCCGCGGTTTAAAAGCAACAGGCAAACGGCCAAGAAAAACACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGAAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGGATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGATGTCCACAACCCAGACTGGCTGCAAGTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCGACGATAGAAAGCTGTAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCCATTGCTAACCCACTGCTTGACCAGCGACCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTAACTTCTTGCTCGACAACGAAAGCGACCATTCAACCCGTCGACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAANTGTGTGTCCAAATCCACCCGATCGGGACGCATGGGTGCTGGAACCGGAACGCCCCGACTGTCCCGGGAGCGAATGTTCTCGCTCCGGCAGCACCGTAACACAGCTAGATNTGTCCGTCCCACCACGCTGGGGGATGGAGAAAACATCATGAACTGCAGCACAGACGTGCTGAGCATGCTGAAC]

[+] EMBL AL692743             [GATCCCCGCGGTTTAAAAGCAACAGGCAAACGGCCAAGAAAAACACGAAAATGGCATTCGATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGAAAGCTGGCGAAAAAACGGCTCTACTGGTGGTGCCGGATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCAGCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGATGTCCACAACCCAGACTGGCTGCAAGTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCATCGACGATAGAAAGCTGTAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCCATTGCTAACCCACTGCTTGACCAGCGACCGATCATTCAGCACTTCGAACGCTGCTAATTGATGAAATCATTGCCTACCCGATCGGGCGAACGTAACTTCTTGCTCGACAACGAAAGCGACCATTCAACCCGTCGACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAANTGTGTGTCCAAATCCACCCGATCGGGACGCATGGGTGCTGGAACCGGAACGCCCCGACTGTCCCGGGAGCGAATGTTCTCGCTCCGGCAGCACCGTAACACAGCTAGATNTGTCCGTCCCACCACGCTGGGGGATGGAGAAAACATCATGAACTGCAGCACAGACGTGCTGAGCATGCTGAAC]


>consensus_7970#3 GATCCCCGCGGTTTAAAAGCAACAGGCAAACGGCCAAGAAAAACACGAAAATGGCATTCG ATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGAAAGCTGGCGAAAAA ACGGCTCTACTGGTGGTGCCGGATTTGTGGCGTAGATTTCACCACAACGCTAATCAATCA GCTTCATATTTGCTCACGACATTTCATTAAAGGTAACTGTGCACCTCTGTGGGATGTCCA CAACCCAGACTGGCTGCAAGTTATTCATCCCACCGCAAACTCGTGAACCCGTCGACGCAT CGACGATAGAAAGCTGTAAAGAGTTCCTGCGCCACGAACAGCTCACCGAAGAATCCATTG CTAACCCACTGCTTGACCAGCGACCGATCATTCAGCACTTCGAACGCTGCTAATTGATGA AATCATTGCCTACCCGATCGGGCGAACGTAACTTCTTGCTCGACAACGAAAGCGACCATT CAACCCGTCGACGTACAGCGCCAGACAGCTGGCGAAGGAGTTAAAGAANTGTGTGTCCAA ATCCACCCGATCGGGACGCATGGGTGCTGGAACCGGAACGCCCCGACTGTCCCGGGAGCG AATGTTCTCGCTCCGGCAGCACCGTAACACAGCTAGATNTGTCCGTCCCACCACGCTGGG GGATGGAGAAAACATCATGAACTGCAGCACAGACGTGCTGAGCATGCTGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7970#1      ----------------------------------------------------------AT 2
consensus_7970#2      CCGAAAGAACAGAACATAAACAAAGCTACAATGGAGTGCGTTTCTCCCCAAATAGATCAT 60
consensus_7970#3      ------------------------------------------------------------
consensus_7970#0      ----------------------------------GAATCCCCCGNGGTTAAATAGATCAT 26
                                                                                  

consensus_7970#1      TAATTAG-TGATTTAAATTGTGTTTGGGTGTTTTTTTAATGCTTCAAAATGGTTTGCTTG 61
consensus_7970#2      TAATTAG-TGATTTAAATTGTGTTTGGGTGTTTTTTTAATGCTTCAAAATGGTTTGCTTG 119
consensus_7970#3      ----------------------------------------------------------GA 2
consensus_7970#0      TAATTAGCTGATTTAAATTGTGTNGGTGTGTTTTTT-AATGCTTCAAAATGGTTTGCTTG 85
                                                                                  

consensus_7970#1      TTTGA-GAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCG 120
consensus_7970#2      TTTGA-GAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCG 178
consensus_7970#3      TCCCC-GCGGTTTAAAAGCAACAGGCAAACGGCCAAGAAAAAC-ACGAAAATGGCATTCG 60
consensus_7970#0      TTTGACGAGTTGTGAAAGCAACAGGCAAACGGCGAAGAAAAACCACGAAAATGGCATTCG 145
                      *     * * * * ******************* ********* ****************

consensus_7970#1      ATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAA-CTGGCGAAAAA 179
consensus_7970#2      ATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAA 238
consensus_7970#3      ATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGAAAGCTGGCGAAAAA 120
consensus_7970#0      ATTCATCTCATTCCCCACAACGGACTACACCAGCGAACAGATGCGCAAGCTGGCGAAAAA 205
                      ********************************************* ** ***********

consensus_7970#1      ACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAAC-GCTAATCAATC 238
consensus_7970#2      ACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAAC-GCTAATCAATC 297
consensus_7970#3      ACGGCTCTACTGGTGGTGCCGGATTTGTGGCGTAGATTTCACCACAAC-GCTAATCAATC 179
consensus_7970#0      ACGGCTCTACTGGTGGTGCCGAATTTGTGGCGTAGATTTCACCACAACTGCTAATCAATC 265
                      ********************* ************************** ***********

consensus_7970#1      AGCT-TCATA--TTTGCT-CACGACATT-TCAT-TAAAGGTAACTGTGCACCTCTGTGGG 292
consensus_7970#2      AGCT-TCATA--TTTGCT-CACGACATT-TCAT-TAAAGGTAACTGTGCACCTCTGTGGG 351
consensus_7970#3      AGCT-TCATA--TTTGCT-CACGACATT-TCAT-TAAAGGTAACTGTGCACCTCTGTGGG 233
consensus_7970#0      AGCTCTCATACTTTTGCTACACGACATTCTCACCTACNGGTAACTGTGCACCTCTGTGGG 325
                      **** *****  ****** ********* ***  **  **********************

consensus_7970#1      ACGTCCACAACCCAGACTGGCTGCCAAGTTTAT-TCATCCCACCGCAAACTCGTGAACCC 351
consensus_7970#2      ACGTCCACAACCCAGACTGGCTGCCAAGTTTAT-TCATCCCACCGCAAACTCGTGAACCC 410
consensus_7970#3      ATGTCCACAACCCAGACTGGCTGCAAG--TTAT-TCATCCCACCGCAAACTCGTGAACCC 290
consensus_7970#0      ACGTCCACAACCCAGACTGGCTGCCAAGTTTATATCATCCCACCGCAAACTCGTGAACCC 385
                      * ********************** *   **** **************************

consensus_7970#1      GTCGACGCATCAACGA-TAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGA 410
consensus_7970#2      GTCGACGCATCAACGA-TAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGA 469
consensus_7970#3      GTCGACGCATCGACGA-TAGAAAGCTGTAAAGAGTTCCTGCGCCACGAACAGCTCACCGA 349
consensus_7970#0      GTCGACGCATCAACGACTAGAAAGCTGCAAAGAGTTCCTGCGCCACGAACAGCTCACCGA 445
                      *********** **** ********** ********************************

consensus_7970#1      AGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCT 470
consensus_7970#2      AGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCT 529
consensus_7970#3      AGAATCCATTGCTAACCCACTGCTTGACCAGCGACC-GATCATTCAGCACTTCGAACGCT 408
consensus_7970#0      AGAATCGATCGCTAACCCTCTGCTTGACCAGCGACCCGATCATTCAGCACTTCGAACGCT 505
                      ****** ** ******** ***************** ***********************

consensus_7970#1      G--CTAA-TTGATGAAATCAT-TGCCTACCCGAT---CGGGCGAACGTA-CTTCTTG-CT 521
consensus_7970#2      G--CTAA-TTGATGAAATCAT-TGCCTACCCGAT---CGGGCGAACGTA-CTTCTTG-CT 580
consensus_7970#3      G--CTAA-TTGATGAAATCAT-TGCCTACCCGAT---CGGGCGAACGTAACTTCTTG-CT 460
consensus_7970#0      TGCCTAACTNGATGAAATCATCTGGCTACCCCGCATACGGGCGAACGCTACTTCTTGGCT 565
                         **** * *********** ** ******      **********   ******* **

consensus_7970#1      CGACGACGAAA--GCGAC-CATTCAACCCC-GTCCACG-TAC-AGCGCC-AGACA-GCTG 573
consensus_7970#2      CGACGACGAAA--GCGAC-CATTCAACCCC-GTCCACG-TAC-AGCGCC-AGACA-GCTG 632
consensus_7970#3      CGACAACGAAA--GCGAC-CATTCAACCC--GTCGACG-TAC-AGCGCC-AGACA-GCTG 511
consensus_7970#0      CGACGACGACAACGCGACATATCAAACCCCGNTCCACGATACCAGCGCCCAGACAAGCTG 625
                      **** **** *  *****  **  *****   ** *** *** ****** ***** ****

consensus_7970#1      GCGAA--GGAGTTAAAGA--AATGTGTGTCCAAA--TCCACCCCGATC--GGAAGCATGG 625
consensus_7970#2      GCGAA--GGAGTTAAAGA--AATGTGTGTCCAAA--TCCACCCCGATC--GGACGCATGG 684
consensus_7970#3      GCGAA--GGAGTTAAAGA--ANTGTGTGTCCAAA--TCCACCCGATCG--GGACGCATGG 563
consensus_7970#0      GCGANACGCAGTTACAGACAANTGTGTGTCCACAATCCCACCCCGATCCGGAAAGCATGG 685
                      ****   * ***** ***  * ********** *   ******       * * ******

consensus_7970#1      -TGCT----------GGAAC-GGAACGCACCCGACTG--TCC--GGAGCG------AATG 663
consensus_7970#2      -TGCT----------GGAAC-GGAACGCCCCCGACTG--TCC--GGAGCG------AATG 722
consensus_7970#3      GTGCT----------GGAACCGGAACGC-CCCGACTG--TCCCGGGAGCG------AATG 604
consensus_7970#0      NGGCCTGGGCAAACGGGAAACCGNAAGCCCCGGACNGGGTNCACGGGACACCGAAAAATG 745
                        **           ****   * * ** ** *** *  * *  **  *       ****

consensus_7970#1      --TTCTCG-TCCGGC--AGCACCGT---AACGC-----AGCTAGATTTGT------CCGT 704
consensus_7970#2      --TTCTCG-TCCGGC--AGCACCGT---AACAC-----AGCTAGATTTGT------CCGT 763
consensus_7970#3      --TTCTCGCTCCGGC--AGCACCGT---AACAC-----AGCTAGATNTGT------CCGT 646
consensus_7970#0      GTTCCTCACTCGGGACAACCACCGTGCAAACGCCCACCANACAACTCTGNGCCGCACCCT 805
                        * ***  ** **   * ******   *** *     *   *  * **       ** *

consensus_7970#1      CCCGCCACGCTG-----GGAGACGGAGAAAACCATCATGAC-GCTGCAG---CACAG-CG 754
consensus_7970#2      CCCGCCACGCTG-----GGAGATGGAGAAAACCATCATGAC-GCTGCAG---CACAG-CG 813
consensus_7970#3      CCCACCACGCTG-----GGGGATGGAGAAAAC-ATCATGA--ACTGCAG---CACAGACG 695
consensus_7970#0      GCCNACACCNTGCGCACANCGGCAGCAAAAACCCCAAAAACCGCNACAAAACCANAGAGN 865
                       **  ***  **        *   *  *****    *  *   *  **    ** **   

consensus_7970#1      TGCTGGGAGCTGCT---GAACCATTTGGATTGAGTAAATGCCTTTTGCAGGGATATGCTT 811
consensus_7970#2      TGCTGGAAGCTGCT---GAACCATTTGGATTGAGTAAATGCCATATGCTGGGATATGCTT 870
consensus_7970#3      TGCTGAGCA-TGCT---GAAC--------------------------------------- 712
consensus_7970#0      TGCTGAGAAAGGCGTAAANACCAATGTGCNTGAGGAAAAGCCNCNANNACGGGCAATTGT 925
                      *****      **      **                                       

consensus_7970#1      GATGAAATCGATTTTTATTTGCTCTTGTTTTTTGTTCAGAAATTTATTTAATAAGAAAAA 871
consensus_7970#2      GATGAAATCGAA-------------------------AAAAA-------AAAAAAAAAAA 898
consensus_7970#3      ------------------------------------------------------------
consensus_7970#0      NACATAAACCAACCNAACCC-CCGGGGTACTCGGTCCGCAACNTGTACTCACAANACTNC 984
                                                                                  

consensus_7970#1      ATGAAGAAATGCGAAAAAGCGATCGGGTGAGTTTTATGTT----TGTTTGTGCATGCTGA 927
consensus_7970#2      AAGGCCAAATGTGCCCGGGC---------------------------------------- 918
consensus_7970#3      ------------------------------------------------------------
consensus_7970#0      ACTGCCAANCCCGCCCGACNCANCCNCCCCNACACACAACACACCGTTNGNCGACGCAAC 1044
                                                                                  

consensus_7970#1      ATAAA---------------- 932
consensus_7970#2      ---------------------
consensus_7970#3      ---------------------
consensus_7970#0      CAAAGGNACAAGGCGCAACCA 1065
                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)