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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1129 fasta sequence
[TTCTATGGGT-AAATTGTGGAATTTATTGGATGAAGAG-TATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGATCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGACGGCCACCGACGACGACGAGGACGACGGTTGAT-CCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGACCGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTCCGACTTCAGCAGCTTCTAAAAAAGGGGCGACACGATCGTTTGGTTCGTGCGCAGCATTTTCAGCTTGTGCGTAATGGCAATGCGCCGATCCGGCACGACCGCCATCAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGACTATTTGTTGTAAAAGGGAGAAAACACGGAA]
[+] EMBL CNS08E9Z [TTCTATGGGT AAATTGTGGAATTTATTGGATGAAGAG TATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGATCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGACGGCCACCGACGACGACGAGGACGACGGTTGAT CCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGACCGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTCCGACTTCAGCAGCTTCTAAAAAAGGGGCGACACGAT ]
[+] EMBL CNS08RZ5 [ ATGGGTAAAATTGTGGAATTTATTGGATGAAGAGATATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGCGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGAACGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACA CAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAtgtg ]
[-] EMBL BX608298 [ accTTGTGGAATTTATTGGATGAAGAG TATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCCAACGCTTTCCCCCTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGTTCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCCCGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGT ]
[-] EMBL BX614192 [ CGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGA ]
[-] EMBL CNS08E9Y [ CGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGACGGCCACCGACGACGACGAGGACGACGGTTGAT CCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCT ]
[-] EMBL CNS08RZ4 [ CGAGGACGACGGTTGATCCCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGACCGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTCCGACTTCAGCAGCTTCTCCAGCGCGGCCGACACGATCGTTTGGTTCGTGCGCAGCATTTTCAGCTTGTGCGTAATGGCAATGCGCCGATCCGGCACGACCGCCATCAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGACTATTTGTTGTAAAAGGGAGAAAACACGGAA]
consensusID : consensus_7988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[ACGAGACGAAGTGGAACGCCTCCCCGGTGAACCGTCCCGTACTGACGCCCGAATTGCGATCCATCCGGCGGCGGGCCTGCGGCATCGCGTGCGAATTGTGCGCACAGGCCAGCTCGGGCGTGTTCCCGATCGCCCAGCCCTTGTTCTCCGGGCTCATGCCCTTCGTGTGCATCTTTAGCCGGCTGAGCGTCTGGCCGAGATCGATGTCGGAGCAGTTCAGCAGCACCGACAGCAGCGCATGGGTGGCACAGCTGTTCGGAACCACCTGCTGGGCGAAGAAGATGTTGTTCACCGCATCCTCGTCCTTCACGTAGATGTCGGTCGTTTCCACGATCTTCCGGCGGGCCCGCCGCTCCTCGATCCAGCGAAACAGAAAGATAAACCCGTACACCTGGCCCTCGAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGAGTATTTGTTGGTAAAAGGGAGGAAAACACGGAAATAATTTTCACGAACCGG]
[-] EMBL BM608631 [ACGAGACGAAGTGGAACGCCTCCCCGGTGAACCGTCCCGTACTGACGCCCGAATTGCGATCCATCCGGCGGCGGGCCTGCGGCATCGCGTGCGAATTGTGCGCACAGGCCAGCTCGGGCGTGTTCCCGATCGCCCAGCCCTTGTTCTCCGGGCTCATGCCCTTCGTGTGCATCTTTAGCCGGCTGAGCGTCTGGCCGAGATCGATGTCGGAGCAGTTCAGCAGCACCGACAGCAGCGCATGGGTGGCACAGCTGTTCGGAACCACCTGCTGGGCGAAGAAGATGTTGTTCACCGCATCCTCGTCCTTCACGTAGATGTCGGTCGTTTCCACGATCTTCCGGCGGGCCCGCCGCTCCTCGATCCAGCGAAACAGAAAGATAAACCCGTACACCTGGCCCTCGAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGAGTATTTGTTGGTAAAAGGGAGGAAAACACGGAAATAATTTTCACGAACCGG]
consensusID : consensus_7988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence
[GTCCTATGGATAACATTGTGGAATTTATTGGATGAAGAGTATCAAAAGTGAATGATGAGTAAAATAAAATCACCCAAAACGCCCCCTGCTTTGCCGCTTTCCCCTCTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGTCCCGGGCGCCGGACGCGTGGGCGG]
[-] EMBL BM612391 [GTCCTATGGATAACATTGTGGAATTTATTGGATGAAGAGTATCAAAAGTGAATGATGAGTAAAATAAAATCACCCAAAACGCCCCCTGCTTTGCCGCTTTCCCCTCTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGTCCCGGGCGCCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7988#0 ---------------------------------------TTCTATGGGTAA-ATTGTGGA 20
consensus_7988#2 --------------------------------------GTCCTATGGATAACATTGTGGA 22
consensus_7988#1 ACGAGACGAAGTGGAACGCCTCCCCGGTGAACCGTCCCGTACTGACGCCCGAATTGCG-- 58
* ** * **** *
consensus_7988#0 ATTTATTGGATGAAGAGT-------ATCAAAAGTGAATGATGAGTA-AAATAAAATCGCC 72
consensus_7988#2 ATTTATTGGATGAAGAGT-------ATCAAAAGTGAATGATGAGTA-AAATAAAATCACC 74
consensus_7988#1 ATCCATCCGGCGGCGGGCCTGCGGCATCGCGTGCGAATTGTGCGCACAGGCCAGCTCGGG 118
** ** * * * * *** * **** ** * * * * **
consensus_7988#0 CAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGC 132
consensus_7988#2 CAAAACGCCCCCTGCTTTGCCGCTTTCCCCTCTACTTCCGCTTGCGACACTTGGCCCTGC 134
consensus_7988#1 CGTGTTCCCGATCGCCCAGCCCTTGTTCTCCGGGCTCATGCCCTTCGTGTGCATCTTTAG 178
* ** ** * * * ** ** * *
consensus_7988#0 CCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGC--CTTCTT 190
consensus_7988#2 CCCGGCGCCGCTTCGTCCCGGGCGCC-----GGACGCGTGGGCGG--------------- 174
consensus_7988#1 CCGGCTGAGCGTCTGGCCGAGATCGATGTCGGAGCAGTTCAGCAGCACCGACAGCAGCGC 238
** * * * * ** * * * *
consensus_7988#0 GTAGCTGCGCGAGATCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCG 250
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ATGGGTGGCACAGCTGTTCGGAACCACCTGCTGGGCGAAGAAGATGTTGTTCACCGCATC 298
consensus_7988#0 CGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGA 310
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 CTCGTCCTTCACGTAGATGTCGGTCGTTTCCACGATCTTCCGGCGGGCCCGCCGCTCCTC 358
consensus_7988#0 CAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAA 370
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 GATCCAGCGAAACAGAAAGATAAACCCGTACACCTGGCCCTCGAGGTTCTTTTGCAGGTC 418
consensus_7988#0 CCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTC 430
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 GTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAG 478
consensus_7988#0 GAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGA 490
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCAT 538
consensus_7988#0 CGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGAT 550
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 CGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGT 598
consensus_7988#0 GATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGAC 610
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 TGCGAGTATTTGTTGGTAAAAGGGAGGAAAACACGGAAATAATTTTCACGAACCGG---- 654
consensus_7988#0 GGCCACCGACGACGACGAGGACGACGGTTGATCCGGTTGCTTTTCCTCCTTAATCGCTAG 670
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 CAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGAC 730
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 CGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTC 790
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 CGACTTCAGCAGCTTCTAAAAAAGGGGCGACACGATCGTTTGGTTCGTGCGCAGCATTTT 850
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 CAGCTTGTGCGTAATGGCAATGCGCCGATCCGGCACGACCGCCATCAGGTTCTTTTGCAG 910
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 GTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAA 970
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 CAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGG 1030
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 CATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGC 1090
consensus_7988#2 ------------------------------------------------------------
consensus_7988#1 ------------------------------------------------------------
consensus_7988#0 GGTTGCGACTATTTGTTGTAAAAGGGAGAAAACACGGAA 1129
consensus_7988#2 ---------------------------------------
consensus_7988#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||