These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1129 fasta sequence [TTCTATGGGT-AAATTGTGGAATTTATTGGATGAAGAG-TATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGATCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGACGGCCACCGACGACGACGAGGACGACGGTTGAT-CCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGACCGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTCCGACTTCAGCAGCTTCTAAAAAAGGGGCGACACGATCGTTTGGTTCGTGCGCAGCATTTTCAGCTTGTGCGTAATGGCAATGCGCCGATCCGGCACGACCGCCATCAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGACTATTTGTTGTAAAAGGGAGAAAACACGGAA] [+] EMBL CNS08E9Z [TTCTATGGGT AAATTGTGGAATTTATTGGATGAAGAG TATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGATCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGACGGCCACCGACGACGACGAGGACGACGGTTGAT CCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGACCGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTCCGACTTCAGCAGCTTCTAAAAAAGGGGCGACACGAT ] [+] EMBL CNS08RZ5 [ ATGGGTAAAATTGTGGAATTTATTGGATGAAGAGATATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGCGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGAACGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACA CAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAtgtg ] [-] EMBL BX608298 [ accTTGTGGAATTTATTGGATGAAGAG TATCAAAAGTGAATGATGAGTAAAATAAAATCGCCCAAAACGCCCCCCGCGGCCAACGCTTTCCCCCTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGCCTTCTTGTAGCTGCGCGAGTTCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCGCGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCCCGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGT ] [-] EMBL BX614192 [ CGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGACAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGA ] [-] EMBL CNS08E9Y [ CGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAACCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTCGAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGACGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGATGATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGACGGCCACCGACGACGACGAGGACGACGGTTGAT CCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCT ] [-] EMBL CNS08RZ4 [ CGAGGACGACGGTTGATCCCGGTTGCTTTTCCTCCTTAATCGCTAGCAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGACCGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTCCGACTTCAGCAGCTTCTCCAGCGCGGCCGACACGATCGTTTGGTTCGTGCGCAGCATTTTCAGCTTGTGCGTAATGGCAATGCGCCGATCCGGCACGACCGCCATCAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGACTATTTGTTGTAAAAGGGAGAAAACACGGAA] consensusID : consensus_7988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [ACGAGACGAAGTGGAACGCCTCCCCGGTGAACCGTCCCGTACTGACGCCCGAATTGCGATCCATCCGGCGGCGGGCCTGCGGCATCGCGTGCGAATTGTGCGCACAGGCCAGCTCGGGCGTGTTCCCGATCGCCCAGCCCTTGTTCTCCGGGCTCATGCCCTTCGTGTGCATCTTTAGCCGGCTGAGCGTCTGGCCGAGATCGATGTCGGAGCAGTTCAGCAGCACCGACAGCAGCGCATGGGTGGCACAGCTGTTCGGAACCACCTGCTGGGCGAAGAAGATGTTGTTCACCGCATCCTCGTCCTTCACGTAGATGTCGGTCGTTTCCACGATCTTCCGGCGGGCCCGCCGCTCCTCGATCCAGCGAAACAGAAAGATAAACCCGTACACCTGGCCCTCGAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGAGTATTTGTTGGTAAAAGGGAGGAAAACACGGAAATAATTTTCACGAACCGG] [-] EMBL BM608631 [ACGAGACGAAGTGGAACGCCTCCCCGGTGAACCGTCCCGTACTGACGCCCGAATTGCGATCCATCCGGCGGCGGGCCTGCGGCATCGCGTGCGAATTGTGCGCACAGGCCAGCTCGGGCGTGTTCCCGATCGCCCAGCCCTTGTTCTCCGGGCTCATGCCCTTCGTGTGCATCTTTAGCCGGCTGAGCGTCTGGCCGAGATCGATGTCGGAGCAGTTCAGCAGCACCGACAGCAGCGCATGGGTGGCACAGCTGTTCGGAACCACCTGCTGGGCGAAGAAGATGTTGTTCACCGCATCCTCGTCCTTCACGTAGATGTCGGTCGTTTCCACGATCTTCCGGCGGGCCCGCCGCTCCTCGATCCAGCGAAACAGAAAGATAAACCCGTACACCTGGCCCTCGAGGTTCTTTTGCAGGTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGTTGCGAGTATTTGTTGGTAAAAGGGAGGAAAACACGGAAATAATTTTCACGAACCGG] consensusID : consensus_7988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [GTCCTATGGATAACATTGTGGAATTTATTGGATGAAGAGTATCAAAAGTGAATGATGAGTAAAATAAAATCACCCAAAACGCCCCCTGCTTTGCCGCTTTCCCCTCTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGTCCCGGGCGCCGGACGCGTGGGCGG] [-] EMBL BM612391 [GTCCTATGGATAACATTGTGGAATTTATTGGATGAAGAGTATCAAAAGTGAATGATGAGTAAAATAAAATCACCCAAAACGCCCCCTGCTTTGCCGCTTTCCCCTCTACTTCCGCTTGCGACACTTGGCCCTGCCCCGGCGCCGCTTCGTCCCGGGCGCCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7988#0 ---------------------------------------TTCTATGGGTAA-ATTGTGGA 20 consensus_7988#2 --------------------------------------GTCCTATGGATAACATTGTGGA 22 consensus_7988#1 ACGAGACGAAGTGGAACGCCTCCCCGGTGAACCGTCCCGTACTGACGCCCGAATTGCG-- 58 * ** * **** * consensus_7988#0 ATTTATTGGATGAAGAGT-------ATCAAAAGTGAATGATGAGTA-AAATAAAATCGCC 72 consensus_7988#2 ATTTATTGGATGAAGAGT-------ATCAAAAGTGAATGATGAGTA-AAATAAAATCACC 74 consensus_7988#1 ATCCATCCGGCGGCGGGCCTGCGGCATCGCGTGCGAATTGTGCGCACAGGCCAGCTCGGG 118 ** ** * * * * *** * **** ** * * * * ** consensus_7988#0 CAAAACGCCCCCCGCGGCAAACGCTTTCCCACTACTTCCGCTTGCGACACTTGGCCCTGC 132 consensus_7988#2 CAAAACGCCCCCTGCTTTGCCGCTTTCCCCTCTACTTCCGCTTGCGACACTTGGCCCTGC 134 consensus_7988#1 CGTGTTCCCGATCGCCCAGCCCTTGTTCTCCGGGCTCATGCCCTTCGTGTGCATCTTTAG 178 * ** ** * * * ** ** * * consensus_7988#0 CCCGGCGCCGCTTCGACCCGGGCGCCTTCGGGGACGTGCCGTTCGTGGCCGC--CTTCTT 190 consensus_7988#2 CCCGGCGCCGCTTCGTCCCGGGCGCC-----GGACGCGTGGGCGG--------------- 174 consensus_7988#1 CCGGCTGAGCGTCTGGCCGAGATCGATGTCGGAGCAGTTCAGCAGCACCGACAGCAGCGC 238 ** * * * * ** * * * * consensus_7988#0 GTAGCTGCGCGAGATCGCCCGGCTGGCGCTGTTCTGGATGCCGCCCATGCTCGGTTTCCG 250 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ATGGGTGGCACAGCTGTTCGGAACCACCTGCTGGGCGAAGAAGATGTTGTTCACCGCATC 298 consensus_7988#0 CGTCGCGATCAGATCCTGCGAGACCAGCTCGGCCAGCACGCCCTGGTGCGCCAGCATCGA 310 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 CTCGTCCTTCACGTAGATGTCGGTCGTTTCCACGATCTTCCGGCGGGCCCGCCGCTCCTC 358 consensus_7988#0 CAGGAACGTGCAGATAAACTCGTCGTAGTTGTGCGTGCGCCGGCAGTCGTCCAGCTTGAA 370 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 GATCCAGCGAAACAGAAAGATAAACCCGTACACCTGGCCCTCGAGGTTCTTTTGCAGGTC 418 consensus_7988#0 CCGGTCGCGCTTCTCGTTCTCGTCGCACAGGTGCTGCTCGGTGATGGCGATTTCCGATTC 430 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 GTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAACAG 478 consensus_7988#0 GAGGTTCTTCAGCAGCGACAGCAAATCTTTCGGCGAAAACGTGCCCGCCCCGATGAACGA 490 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGGCAT 538 consensus_7988#0 CGAGGGCGGCGAGGGCGGTGAGGAGTGGTCCGGCTCCGGTTTGATGTCCGGCTCGCCGAT 550 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 CGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGCGGT 598 consensus_7988#0 GATTTCCACCGAATCGGACGAACTGTTCATCGAGACGAACGATTCGAGCTCCTTCGAGAC 610 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 TGCGAGTATTTGTTGGTAAAAGGGAGGAAAACACGGAAATAATTTTCACGAACCGG---- 654 consensus_7988#0 GGCCACCGACGACGACGAGGACGACGGTTGATCCGGTTGCTTTTCCTCCTTAATCGCTAG 670 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CAGCTCTGAGTATTCGTCGGACAGCTTTACCGGGGTCGTTTCGTCCGCTTCCTTCTTGAC 730 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CGTTGCGCTCAGTGTTCGCGAACCGCCTGCCGTTGCGGCGCTCGTTGCTTCCTTCTTTTC 790 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CGACTTCAGCAGCTTCTAAAAAAGGGGCGACACGATCGTTTGGTTCGTGCGCAGCATTTT 850 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CAGCTTGTGCGTAATGGCAATGCGCCGATCCGGCACGACCGCCATCAGGTTCTTTTGCAG 910 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 GTCGTAGATTTCCTCCACCTGCACGCCCTTCACGCCGAAGTCCTCCAGCAGCAGCGTGAA 970 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CAGACCGGGATCGCTTTCCAGCTCCAGCCAGCCGTCGTTCAGGCGGTTGATATCGACGGG 1030 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 CATCGCCATCGCGTAACTTTTCCGAGCGCTTTTCACATGAAAACTAATAAAGCCATCGGC 1090 consensus_7988#2 ------------------------------------------------------------ consensus_7988#1 ------------------------------------------------------------ consensus_7988#0 GGTTGCGACTATTTGTTGTAAAAGGGAGAAAACACGGAA 1129 consensus_7988#2 --------------------------------------- consensus_7988#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||