These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1159 fasta sequence [GACCCACGCGTCCGCCACTCTACAAAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAGAACACCAACGCCAAGCGAGGAGTTTCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGAACCAAAAGCTCCGACAGGGCTCGACAACCTCAACATCAGGGATGGAAAAAAGTGAATCGTGAAGATTATCAACAGTTAGTTGCACATTTGTTTTTGAAGCATTACTAAACGTATGTTTTAGTTGATTTGAATGTGTGCTATGTGCTCGGAGATAATACAGAGCAAATATGCATTTGATCTATGTCCTTGCTTCTTCCCAAACAGCAAACAAATCAGAACGTCGCGCTCGAACGGTTTGCCCCTTTGTAGAATAGTTGTACAGGTTAGTTCCCTCGGTGTGTCCCTCATTTTTAATGTATCTCGCACAGCACGCTTGACCGTGTGCCTGTGCATGCGTGTGTATTTAGTGTTGCACTAGCAGAAGGTTGTTTTCGATTTTGTCACTAAAACACTCAAATTATTATTGCATAAATTATTCTTCCCCACAAGAGGCGTAGAACCATTTCGTCCAAGGAATCTAAATTCCGCTCTAATTTTACTATTGTTTGGTTCAACATAAAAAAATTAGTATATCAATCAACCTACCAATCAAACCCCCCCCTCTTCCCCCTCCCAACATCATGTAATGAATCTCGATTGCAAAAAGCATCGAAACAGACATCTAAAAGACAGTAGCAAAGGTAAATGCAGGAAGGCAGAAGCATTACCGAAGATAGGTAGAAATTTATTTAGCTTTTCTTCATCTAAAATTTAATCTCTTCACCCACCAAACGTGTTGTTGGAGGAAAAAAAAACTCAATCCCACAAAAAGGGTTGAGCGATAAATCGGTATAGCATACAGCCGCAGTTCACTAGTTCTGGTATCTTTCATCGTGCTCCGTACGGCGAGGAACGGTGTAGAGATCGATGCGGCACGGACAGCAAACAGCTCTGGTGGGATGCAAACACCGCCTCATGTACCGAGTCAGCGGCCATCCTTTTGCGCTTTTCGCAGCATTGCTATAGATTGTGCTATAATTGCAAAGAAAACAAAGTCAGCAAACTGTAAGAAGAACCTGTGTATCTGTAATACCAATCGATCCGAATAAAGATTACAAAA] [+] EMBL BM656472 [GACCCACGCGTCCGCCACTCTACAAAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAGAACACCAACGCCAAGCGAGGAGTTTCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGAACCAAAAGCTCCGACAGGGCTCGACAACCTCAACATCAGGGATGGAAAAAAGTGAATCGTGAAGATTATCAACAGTTAGTTGCACATTTGTTTTTGAAGCATTACTAAACGTATGTTTTAGTTGATTTGAATGTGTGCTATGTGCTCGGAGATAATACAGAGCAAATATGCATTTGATCTATGTCCTTGCTTCTTCCCAAACAGCAAACAAATCAGAACGTCGCGCTCGAACGGTTTGCCCCTTTGTAGAATAGTTGTACAGGTTAGTTCCCTCGGTGTGTCCCTCATTTTTAATGTATCTCGCACAGCACGCTTGACCGTGTGCCTGTGCATGCGTGTGTATTTAGTGTTGCACTAGCAGAAGGTTGTTTTCGATTTTGTCACTAAAACACTCAAATTATTATTGCATAAATTATTCTTCCCCACAAGAGGCGTAGAACCATTTCGTCCAAGGAATCTAAATTCCGCTCTAATTTTACTATTGTTTGGTTCAACATAAAAAAATTAGTATATCAATCAACCTACCAATCAAACCCCCCCCTCTTCCCCCTCCCA ] [+] EMBL BX608708 [ AATTTTACTTTTGTTTGTTTCAACAT AAAAAATTAGTATATCAATCAACCTACCAATCAAA CCCCCCCTCTT CCCCTCCCAACATCATGTAATGAATCTCGATTGCAAAAAGCATCGAAACAGACATCTAAAAGACAGTAGCAAAGGTAAATGCAGGAAGGCAGAAGCATTACCGAAGATAGGTAGAAATTTATTTAGCTTTTCTTCATCTAAAATTTAATCTCTTCACCCACCAAACGTGTTGTTGGAGGAAAAAAAAACTCAATCCCACAAAAAGGGTTGAGCGATAAATCGGTATAGCATACAGCCGCAGTTCACTAGTTCTGGTATCTTTCATCGTGCTCCGTACGGCGAGGAACGGTGTAGAGATCGATGCGGCACGGACAGCAAACAGCTCTGGTGGGATGCAAACACCGCCTCATGTACCGAGTCAGCGGCCATCCTTTTGCGCTTTTCGCAGCATTGCTATAGATTGTGCTATAATTGCAAAGAAAACAAAGTCAGCAAACTGTAAGAAGAACCTGTGTATCTGTAATACCAATCGATCCGAATAAAGATTACAAAA] [+] EMBL BM646920 [ GCGGCACGGACAGCAAACAGCTCTGGTGGGATGCAAACACCGCCTCATGTACCGAGTCAGCGGCCATCCTTTTGCGCTTTTCGCAGCATTGCTATAGATTGTGCTATAATTGCAAAGAAAACAAAGTCAGCAAACTGTAAGAAGAACCTGTGTATCTGTAATACCAATCGAT ] consensusID : consensus_7995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1106 fasta sequence [CCGCCCACGCGTCCGTTTTGTACTACTGCCAGCTGAGCAATACGATGCGACTAAAAATATCCAACCCACTATTCATAACCGCCGAAGAACGAACGAATTTCATCGTTTAGTCATGTTTTAGTGAGTGATCATTTTTTTCTCCCGTCGCCATTGATCTGTTCGTTTTAGTACTACTGTACTCGGGTAGAGCAGGGTTATGACAAAGAACAGAGAAATAGAGAGAGAGAGCGAGTGCCACACAACAACAATATCCCACCTCAATAGGTAGCCGAATCAAACGCACAAATTCATTTCTTTTCTATCTGCTTTAAAAAACGCACAAAACTGTCAAAAGTCAAATCACATGATCTAATGGGAACAAATCTTTGTAGAATAGTAATAAGAGGGAGCTATTATAGTAAATAATGGAACAACATCAATCGTTCAAAACACGCTACAGTAGATCAAATGTAATGGACAGTCGAAAGATGTCTTCGAACCAATTACTACACCACCTACAGTACACTCCGAATTCACTAATTGAACGTTGATTTGTTGCCAACACGTAAAGCGCATGCTTATTAGTTAAACTGTTTTCAACAAGAAGAAGTTGTTTGCCAATTATCGAACATACAACTAATAAGCATACCGACTAGAAAGCGTTCAATTATTTGAATTCCGATCGTATATCTCAAGAAGAAAAAAACGGAAATCGTAAACGTAGCAATAGCTCATCTTTTGGATGTCTTTTACCCAGTATTCTTTACTGTATAACTCAAGTGCCAATAGTAGTTTTTCGTAGACAGATGTTAGCTATCTTTGGAACCACTCTACAAAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAGAACACCAACGCCAAGCGAGGAGTTTCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGAACCAAAAGCTCCGACAGGGCTCGACAACCTCAACATCAGGGATGGAAAAAAGTGAATCGTGAAGATTATCAACAGTTAGTTGCACATTTGTTTTTGAAGCATTACTAAACGTATGTTTTAGTTGATTTGAATGTGTGCTATGTGCTCGGAGATAATACAGAGCAAATATGCATTTGATCTATGTCCTTGCTTCTTC] [+] EMBL BM627278 [CCGCCCACGCGTCCGTTTTGTACTACTGCCAGCTGAGCAATACGATGCGACTAAAAATATCCAACCCACTATTCATAACCGCCGAAGAACGAACGAATTTCATCGTTTAGTCATGTTTTAGTGAGTGATCATTTTTTTCTCCCGTCGCCATTGATCTGTTCGTTTTAGTACTACTGTACTCGGGTAGAGCAGGGTTATGACAAAGAACAGAGAAATAGAGAGAGAGAGCGAGTGCCACACAACAACAATATCCCACCTCAATAGGTAGCCGAATCAAACGCACAAATTCATTTCTTTTCTATCTGCTTTAAAAAACGCACAAAACTGTCAAAAGTCAAATCACATGATCTAATGGGAACAAATCTTTGTAGAATAGTAATAAGAGGGAGCTATTATAGTAAATAATGGAACAACATCAATCGTTCAAAACACGCTACAGTAGATCAAATGTAATGGACAGTCGAAAGATGTCTTCGAACCAATTACTACACCACCTACAGTACACTCCGAATTCACTAATTGAACGTTGATTTGTTGCCAACACGTAAAGCGCATGCTTATTAGTTAAACTGTTTTCAACAAGAAGAAGTTGTTTGCCAATTATCGAACATACAACTAATAAGCATACCGACTAGAAAGCGTTCAATTATTTGAATT ] [+] EMBL BM576808 [ ccgGTCAAAAGTCAAATCACATGATCTAATGGGAACAAATCTTTGTAGAATAGTAATAAGAGGGAGCTATTATAGTAAATAATGGAACAACATCAATCGTTCAAAACACGCTACAGTAGATCAAATGTAATGGACAGTCGAAAGATGTCTTCGAACCAATTACTACACCACCTACAGTACACTCCGAATTCACTAATTGAACGTTGATTTGTTGCCAACACGTAAAGCGCATGCTTATTAGTTAAACTGTTTTCAACAAGAAGAAGTTGTTTGCCAATTATCGAACATACAACTAATAAGCATACCGACTAGAAAGCGTTCAATTATTTGAATTCCGATCGTATATCTCAAGAAGAAAAAAACGGAAATCGTAAACGTAGCAATAGCTCATCTTTTGGATGTCTTTTACCCAGTATTCTTTACTGTATAACTCAAGTGCCAATAGTAGTTTTTCGTAGACAGATGTTAGCTATCTTTGGAACCACTCTACAAAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAGAACACCAACGCCAAGCGAGGAGTTTCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGAACCAAAAGCTCCGACAGGGCT ] [+] EMBL BM624736 [ ccgATGGGAACAAATCTTTGTAGAATAGTAATAAGAGGGAGCTATTATAGTAAATAATGGAACAACATCAATCGTTCAAAACACGCTACAGTAGATCAAATGTAATGGACAGTCGAAAGATGTCTTCGAACCAATTACTACACCACCTACAGTACACTCCGAATTCACTAATTGAACGTTGATTTGTTGCCAACACGTAAAGCGCATGCTTATTAGTTAAACTGTTTTCAACAAGAAGAAGTTGTTTGCCAATTATCGAACATACAACTAATAAGCATACCGACTAGAAAGCGTTCAATTATTTGAATTCCGATCGTATATCTCAAGAAGAAAAAAACGGAAATCGTAAACGTAGCAATAGCTCATCTTTTGGATGTCTTTTACCCAGTATTCTTTACTGTATAACTCAAGTGCCAATAGTAGTTTTTCGTAGACAGATGTTAGCTATCTTTGGAACCACTCTACAAAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAGAACACCAACGCCAAGCGAGGAGTTTCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGAACCAAAAGCTCCGACAGGGCTCGACAACCTCAACATCAGGGATGGAAAAAAGTGAATCGTGAAGATTATCAACAGTTAGTTGCACATTTGTTTTTGAAGCATTACTAAACGTATGTTTTAGTTGATTTGAATGTGTGC ] [+] EMBL BX611348 [ CTTCGAACTAATTACTACACCACCTACAGTACACTCCGAATTCACTAATTGAACGTTGATTTGTTGCCAACACGTAAAGCGCATGCTTATTAGTTAAACTGTTTTCAACAAGAAGAAGTTGTTTGCCAATTATCGAACATACAACTAATAAGCATACCGACTAGAAAGCGTTCAATTATTTGAATTCCGATCGTATATCTCAAGAAGAAAAAAACGGAAATCGTAAACGTAGCAATAGCTCATCTTTTGGATGTCTTTTACCCAGTATTCTTTACTGTATAACTCAAGTGCCAATAGTAGTTTTTCGTAGACAGATGTTAGCTATCTTTGGAACCACTCTACAAAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAGAACACCAACGCCAAGCGAGGAGTTTCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGAACCAAAAGCTCCGACAGGGCTCGACAACCTCAACATCAGGGATGGAAAAAAGTGAATCGTGAAGATTATCAACAGTTAGTTGCACATTTGTTTTTGAAGCATTACTAAACGTATGTTTTAGTTGATTTGAATGTGTGCTATGTGCTCGGAGATAATACAGAGCAAATATGCATTTGATCTATGTCCTTGCTTCTTC] consensusID : consensus_7995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GCAGAATCGGCACGAGGCTNCGATTGCAAAAAGCATCGAAACAGACATCTAAACAGACAGTAGCAAAGGTAAATGCAGGAAGGCAGAAGCATTACCGAAGATAGGTAGAAATTTATTTAGCTTNGGCTTCATCTAAAATTTAATCTCTTCACCCACCAAACGTGTTGTTGGAGGAAAAAAAAACTCAATCCCACAAAAAGGGTTGAGCGATAAATCGGTATAGCATACAGCCGCAGTTCACTAGTTCTGGTATCTTTCATCGTGCTCCGTACGGCGAGGAACGGTGTAGAGATCGATGCGGCACGGACACGCAAACAGCTCTGGTGGGATGCAAACACCGCTCATGTACCGAGTCAGCGGNCATCCTTTTGCGCTGTTTGCGCAGCATTGCTATAGATTGTGCTATAATTGCAACAGAANACAAAGTCAGCAAACTGTAAAAAAACAGAAANAAAGAACA] [+] EMBL BX469353 [GCAGAATCGGCACGAGGCTNCGATTGCAAAAAGCATCGAAACAGACATCTAAACAGACAGTAGCAAAGGTAAATGCAGGAAGGCAGAAGCATTACCGAAGATAGGTAGAAATTTATTTAGCTTNGGCTTCATCTAAAATTTAATCTCTTCACCCACCAAACGTGTTGTTGGAGGAAAAAAAAACTCAATCCCACAAAAAGGGTTGAGCGATAAATCGGTATAGCATACAGCCGCAGTTCACTAGTTCTGGTATCTTTCATCGTGCTCCGTACGGCGAGGAACGGTGTAGAGATCGATGCGGCACGGACACGCAAACAGCTCTGGTGGGATGCAAACACCGCTCATGTACCGAGTCAGCGGNCATCCTTTTGCGCTGTTTGCGCAGCATTGCTATAGATTGTGCTATAATTGCAACAGAANACAAAGTCAGCAAACTGTAAAAAAACAGAAANAAAGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7995#0 GACCCACGCGTCCGCCACTCTACAAAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAG 60 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 AACACCAACGCCAAGCGAGGAGTTTCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGA 120 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------CCGCCCACGCGTCCGTTTTGTACTACTGCCAGCTGAGCAATACGATG----CGA 50 consensus_7995#0 ACCAAAAGCTCCGACAGGGCTCGACAACCTCAACATCAGGGATGGAAAAAAGTGAATCGT 180 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 CTAAAAATATCCAAC----CCACTATTCATAACCGCCGAAGAACGAACGAATTTCATCGT 106 consensus_7995#0 GAAGATTATCAACAGTTAGTTGCACATTTGTTTTTGAAGCATTACTAAAC-GTATGTTTT 239 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 TTAGTCATGTTTTAGTGAGTGATCATTTTTTTCTCCCGTCGCCATTGATCTGTTCGTTTT 166 consensus_7995#0 AGTTGATTTGAATGTGTGCTATGTGCTCGGAGATAATACAGAGCAAATATGCATTTGATC 299 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 AGTACTACTGTACTCGGGT--AGAGCAGGGTTATGACAAAGAACAGAGAAATAGAGAGAG 224 consensus_7995#0 TATGTCCTTGCTTCTTCCCAAACAGCAAACAAATCAGAACGTCGCGCTCGAACGGTTTGC 359 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 AGAGCGAGTGCCACACAACAACAATATCCCACCTCAATAGGTAGC---CGAATCAAACGC 281 consensus_7995#0 CCCTTTGTAGAATAGTTGTACAGGTTAGTTCCCTCGGTGTGTCCCTCATTTTTAATGTAT 419 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ACAAATTCA---TTTCTTTTCTATCTGCTTTAAAAAACGCACAAAACTGTCAAAAGTCAA 338 consensus_7995#0 CTCGCACAGCACGCTTG-ACCGTGTGCCTGTGCATGCGTGTGTATTTAGTGTTGCACTAG 478 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ATCACATGATCTAATGGGAACAAATCTTTGTAGAATAGTAATAAGAGGGAGCTATTATAG 398 consensus_7995#0 CAGAAGGTTGTTTTCGATTTTGTCACTAAAACACTCAAATTATTATTGCATAAATTATTC 538 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 TAAATAATGGAACAACATCAATCGTTCAAAACACGCTACAGTAGATCAAATGTAATGGAC 458 consensus_7995#0 TTCCCCACAAGAGGCGTAGAACCATTTCGTCCAAGGAATCTAAATTCCGCTCTAATTTTA 598 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 AGTCGAA-AGATGTCTTCGAACCAATTACTACAC--CACCTACAGTACACTCCGAATTCA 515 consensus_7995#0 CTATTGTTTGGTTCAACATAAAAAAATTAGTATATCAATCAACCTACCAATCAAACCCCC 658 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 CTAATTGAACGTTGATTTGTTGCCAACACGTAAAGCG-CATGCTTATTAGTTAAACTGTT 574 consensus_7995#0 CCCTCTTCCCCCTCCCAACAT--CATGTAATGAAT-CTCGATTGCAAAAAGCATCGA--A 713 consensus_7995#2 --------------GCAGAAT--CG-GCACGAGGC-TNCGATTGCAAAAAGCATCGA--A 40 consensus_7995#1 TTCAACAAGAAGAAGTTGTTTGCCAATTATCGAACATACAACTAATAAGCATACCGACTA 634 * * * * * * ** * *** * consensus_7995#0 ACAGACATCTAAA-AGAC-AGTAGCAAAGGTAAATG-CAGGAAGGCAGAAGCATTA-CCG 769 consensus_7995#2 ACAGACATCTAAACAGAC-AGTAGCAAAGGTAAATG-CAGGAAGGCAGAAGCATTA-CCG 97 consensus_7995#1 GAAAGCGTTCAATTATTTGAATTCCGATCGTATATCTCAAGAAGAAAAAAACGGAAATCG 694 * * * ** * * * * * *** ** ** **** * ** * * ** consensus_7995#0 AAGATA-GGTAGAAATTTAT--TTAGCTTTT-CTTCATCTAAAATT--TAATCTCTTCAC 823 consensus_7995#2 AAGATA-GGTAGAAATTTAT--TTAGCTTNGGCTTCATCTAAAATT--TAATCTCTTCAC 152 consensus_7995#1 TAAACGTAGCAATAGCTCATCTTTTGGATGTCTTTTACCCAGTATTCTTTACTGTATAAC 754 * * * * * * ** ** * * ** * * * *** * * * ** consensus_7995#0 CCA----CCAAACGT-GTTGTTGGAGGAAAAAAA--AACT----------CAATCCCACA 866 consensus_7995#2 CCA----CCAAACGT-GTTGTTGGAGGAAAAAAA--AACT----------CAATCCCACA 195 consensus_7995#1 TCAAGTGCCAATAGTAGTTTTTCGTAGACAGATGTTAGCTATCTTTGGAACCACTCTACA 814 ** **** ** *** ** * ** * * * ** * * * *** consensus_7995#0 AAAAGGGTTGAG--CGATAAATCGGTATAGC-ATACAGCCGCAGTTCACTAGTTCTGGTA 923 consensus_7995#2 AAAAGGGTTGAG--CGATAAATCGGTATAGC-ATACAGCCGCAGTTCACTAGTTCTGGTA 252 consensus_7995#1 AAATCCGTTGCATTCGTTCAACTGCAAAAGCTACAGAACACCAACGCCAAGCGAGGAGTT 874 *** **** ** * ** * * *** * * * * ** * ** consensus_7995#0 TCTTTCATCGTGCTCCGTACGGCGAGGA-ACGGTGTAGAGATCGATGCGGCACGGACA-G 981 consensus_7995#2 TCTTTCATCGTGCTCCGTACGGCGAGGA-ACGGTGTAGAGATCGATGCGGCACGGACACG 311 consensus_7995#1 TCTATTTTTACCCGCTAGATGGCGCTGTCATCTCGAACCAAAAGCTCCGACAGGGCTCGA 934 *** * * * * * **** * * * * * * * ** ** ** consensus_7995#0 CAAACAGCTCTGGTGGGATGCAAACAC-CGCCTCATGTACCGAGTCAGCGGCCATCCTTT 1040 consensus_7995#2 CAAACAGCTCTGGTGGGATGCAAACAC-CGC-TCATGTACCGAGTCAGCGGNCATCCTTT 369 consensus_7995#1 CAACCTCAACATCAGGGATGGAAAAAAGTGAATCGTGAAGATTATCAACAGTTAGTTGCA 994 *** * * ****** *** * * ** ** * *** * * * consensus_7995#0 TGCGCTTTT--CGCAGCATTGCTATAGATTGTGCTATAATTGCAA-AGAAAACAAAGTCA 1097 consensus_7995#2 TGCGCTGTTTGCGCAGCATTGCTATAGATTGTGCTATAATTGCAACAGAANACAAAGTCA 429 consensus_7995#1 CAT-TTGTTTTTGAAGCATTACTA-AACGTATGTTTTAGTTG-ATTTGAATGTGTGCTAT 1051 * ** * ****** *** * * ** * ** *** * *** * consensus_7995#0 GCAAACTGTAAGAAGAACCTGTGTATCTGTAATACCAATCGATCCGAATAAAGATTACAA 1157 consensus_7995#2 GCAAACTGTAAAAAAA---CAGAAANAAAGAACA-------------------------- 460 consensus_7995#1 GTGCTCGGAGATAATACAGAGCAAATATGCATT--TGATCTATGTCCTTGCTTCTTC--- 1106 * * * * ** * * * consensus_7995#0 AA 1159 consensus_7995#2 -- consensus_7995#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||