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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1227 fasta sequence
[AATTCTATATATTTAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC-TAAAGCGTTT-CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA-TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA---------GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG---TACTCGCTGCGGAAATAATGG-AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTCGGACGCGTGGGCGG]
[+] EMBL CNS09QYA [AATTCTATATATTTAGAACTCGGTAAAGTTCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGTTCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC TAAAGCGTTTCCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAATTCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTC ]
[-] EMBL BX612802 [ aaaTATATATTTAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCAT ]
[+] EMBL CNS08Y4D [ TATATATAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAAAAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAATGGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATAAAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAAAGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAAAAAAGGTAACAAATGCGACGCACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC TAAAGCGTTT CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTAGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTTCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGAACGCGAGGCTTTTCGGGGTTGTTAATTGTTGTTTGTTTCACT ]
[-] EMBL CNS08Y4C [ AATGAATGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAGCTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTACTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGTACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCC TAAAGCGTTT CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGTTTTTAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTTTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG TACTCGCTGCGGAAATAATGG AAAAGGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTT ]
[-] EMBL BM594220 [ CACTAGGAAACATTCCTTTCCTTAAAGCGTTT CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG TACTCGCTGCGGAAATAATGG AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACcgg ]
[-] EMBL BM588363 [ CCTTTCC TAAAGCGTTT CCGCTGTTTTGTCTTTCATCGTTTGTTCCTTAACATTAAGATTA T GTAT GTATGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGTACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGATGTTCCGGAAATTGGAGAGTAGTAGCCGTGTTCGCTTGCGGTGGTGGCATCGACGACTTTGGATCCGAGAAC TGCTGCTGCTGCATGTTCTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGTAAGCACCGGGTGGCGGTACAATAGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACCGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTAAATTATGCACTACTCGCTGCAGAAATAGTGGAAAAAAACGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGG ]
[-] EMBL BM609604 [ T CCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAA TCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGA GTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATG TACTCGCTGCGGAAATAATGG AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTCGGACGCGTGGGCGG]
consensusID : consensus_7997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence
[CTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGAAGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGGAAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTGTGCGCATCAAGCGTGAAATTTACGAATAGAG]
[-] EMBL CNS09QY9 [CTTACGCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTAGGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAACATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCCTGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCAGAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTGTTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATGTTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGAAGGGTATACCGGGTACGTCACAGTGCCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGTTGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCATTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATGGTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGGAAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGTGATCGCGGCTTTGTGCGCATCAAGCGTGAAATTTACGAATAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7997#0 AATTCTATATATTTAGAACTCGGTAAAGTCCGGTAAAGTTGAATATATGTAGGAATTCAA 60
consensus_7997#1 ------------------------------------------------------------
consensus_7997#0 AAATCGATAAGAAAATACGAGAGTATTCTACTCCATAAGTGCGATGCAATAACATCTAAT 120
consensus_7997#1 ------------------------------------------------------------
consensus_7997#0 GGCACGAATACTGGGAGCAAAAGATTCGTCAATGGTCTAATGTAGTGGCTTGTGTGGATA 180
consensus_7997#1 ------------------------------------------------------------
consensus_7997#0 AAGATGTTGGCAAGATGGTCCGGTGCGATTTTATCAAACGAAATTTTTTTTTATAATGAA 240
consensus_7997#1 ------------------------------------------------------------
consensus_7997#0 TGATTAGACTATGAAAATCATCCAAATAATCGCAATATAAACCGAAATAGCGTTTGACAG 300
consensus_7997#1 ------------------------------------------------------------
consensus_7997#0 CTGCATCCTATAAAATCGTATAGGATGGGCGTTTCCACTGCCCTAAACGGCGTCCCATTA 360
consensus_7997#1 ------------------------------------------------------------
consensus_7997#0 CTCTCGATTTTCGACGAACGAGTTGATCGGCTTGGGCACTTGTTGCCAGACGAATTCAGT 420
consensus_7997#1 ------------------------------------------------------------
consensus_7997#0 ACATTTTTCTCATATTGCCACACCATTAGACCACTGACTTGACATGGTACATAAACTTAC 480
consensus_7997#1 -------------------------------------------------------CTTAC 5
*****
consensus_7997#0 GCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTA 540
consensus_7997#1 GCGATACAGTCTAATAGATGCGGTAACAAATGCGACTAACGCTTGCCTACGATGGCACTA 65
************************************************************
consensus_7997#0 GGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAAC 600
consensus_7997#1 GGAAACATTCCTTTCCTAAAGCGTTTCCGCTGTTTTGTGTTTCATCGTTTGTTCCTTAAC 125
************************************************************
consensus_7997#0 ATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCC 660
consensus_7997#1 ATTAAGATTAATCGTACGTATTGTCGTACGGCCATTGTCGTTTAACCCTTGTAAGGAGCC 185
************************************************************
consensus_7997#0 TGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCA 720
consensus_7997#1 TGCACTGGTTTAGTGTCACCCACCACTTGGTTGTAGCTGGGTGGATTCATCATCGCTGCA 245
************************************************************
consensus_7997#0 GAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTG 780
consensus_7997#1 GAACCATTGGGTGGAACCGGATAGTACATTTGCGGAGGAAGTTCCGGAAATTGGAGAGTG 305
************************************************************
consensus_7997#0 TTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATG 840
consensus_7997#1 TTCGCTTGCGGTGGTGGCATCGACGATTTTGGATCCGAGAACTGTTGCTGCTGCTGCATG 365
************************************************************
consensus_7997#0 TTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGTTGGGTATACCGGGTACGTCACAGTG 900
consensus_7997#1 TTGTGCTCGTGTGGCTGTTGCATCATGTACGGAGAAGGGTATACCGGGTACGTCACAGTG 425
********************************** ************************
consensus_7997#0 CCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGT 960
consensus_7997#1 CCAGTCGGATGACGAAGAATGAATGCACCGGGTGGTGGCACAATTGTTGTAGATTGCGGT 485
************************************************************
consensus_7997#0 TGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCA 1020
consensus_7997#1 TGATCGCGAGGCTTTTCGGGGTTGTTAATTGTTGTGTGTGTCACTATCACGGCACGATCA 545
************************************************************
consensus_7997#0 TTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATG 1080
consensus_7997#1 TTCTTGCAACAGCAACATTTGATGCAACCGTAAATGCAGAACCCAAATATTATGAAAATG 605
************************************************************
consensus_7997#0 GTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGG 1140
consensus_7997#1 GTAATTATGATAAGATCAATCATCGTTATCTGAATTATGTACTCGCTGCGGAAATAATGG 665
************************************************************
consensus_7997#0 AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGT 1200
consensus_7997#1 AAAAAGCGACACACTCCTTTTGCCGATAGCTACTTTCAAGGCAAAACAACTTTACGAGGT 725
************************************************************
consensus_7997#0 GATCGCGGCTTTCGGACGCGT-GGGCGG----------------- 1227
consensus_7997#1 GATCGCGGCTTT-GTGCGCATCAAGCGTGAAATTTACGAATAGAG 769
************ * *** * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||