These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_80#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CGCACATGCTGCTCCTATTTATGTTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCATCACTTTCTATGTACACGGGATCGGCCTTTTGCGCCCCCTTCCCCCCCAAAACATGTGTTATGTAGTGTATGTGAGTCACTTGGTGGAGTCGCTTCGAATGTCCTCTCTCTCTCTCCTTCTCTCCCGGTAGGACTGCTGGAAGCGAAACCGCAACAAGAAAAACTGTTTAACGTACACTAAGCGAGTTGGGTTTGCTGCCCAC] [+] EMBL BX466787 [CGCACATGCTGCTCCTATTTATGTTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCATCACTTTCTATGTACACGGGATCGGCCTTTTGCGCCCCCTTCCCCCCCAAAACATGTGTTATGTAGTGTATGTGAGTCACTTGGTGGAGTCGCTTCGAATGTCCTCTCTCTCTCTCCTTCTCTCCCGGTAGGACTGCTGGAAGCGAAACCGCAACAAGAAAAACTGTTTAACGTACACTAAGCGAGTTGGGTTTGCTGCCCAC] consensusID : consensus_80#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [TCGATGTACTGTTCAACTGTTTCTATTTATATTTTACACAAACTCTTACCTACATAAAGTGGGGGTTTCCTCCCGAACTGGCGGGCAAGACTTTTCCAAACAAATTGCCTTTTTTTTACTAATAAATTACACTACAAACGTCGAACGTAACAAGCATTAAATCATTCGAAGGAAACAAAACATTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCAT] [+] EMBL BX613828 [TCGATGTACTGTTCAACTGTTTCTATTTATATTTTACACAAACTCTTACCTACATAAAGTGGGGGTTTCCTCCCGAACTGGCGGGCAAGACTTTTCCAAACAAATTGCCTTTTTTTTACTAATAAATTACACTACAAACGTCGAACGTAACAAGCATTAAATCATTCGAAGGAAACAAAACATTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGCACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAGTGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAACCTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAGTAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTGTAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCACTGCGCTTTCCCCCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_80#0 ------------------------------------------------------------ consensus_80#1 TCGATGTACTGTTCAACTGTTTCTATTTATATTTTACACAAACTCTTACCTACATAAAGT 60 consensus_80#0 ------------------------------------------------------------ consensus_80#1 GGGGGTTTCCTCCCGAACTGGCGGGCAAGACTTTTCCAAACAAATTGCCTTTTTTTTACT 120 consensus_80#0 ----------------------------------------CGCACATGCTGCTCCTATTT 20 consensus_80#1 AATAAATTACACTACAAACGTCGAACGTAACAAGCATTAAATCATTCGAAGGAAACAAA- 179 ** * * * consensus_80#0 ATGTTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGC 80 consensus_80#1 ACATTAACATTGCTTAAACAACTAAACATAAATATACAGGCTTCTTGGTGCAGTTGATGC 239 * ********************************************************* consensus_80#0 ACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAG 140 consensus_80#1 ACCGGTTGCGCTAAAAGGATAAAAACAAACTCGCGCCACAAGGCAAAGGCGTTGGAAGAG 299 ************************************************************ consensus_80#0 TGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAAC 200 consensus_80#1 TGGTTTTGTTGGTGAAAACAGAGCGAACAATAATGGCCGTACGGCGCACGTAAATGTAAC 359 ************************************************************ consensus_80#0 CTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAG 260 consensus_80#1 CTATCCCAGCTGGCTCCCAGACAGCTAATATCGTTCGTGTAACAGTAGTAGTTGTAGTAG 419 ************************************************************ consensus_80#0 TAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTG 320 consensus_80#1 TAGTAGTAGTCCCTTGGCAGTAGCTCAAACGTAGTAGTTTTGCAAACAAAACCTAAAGTG 479 ************************************************************ consensus_80#0 TAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCAC 380 consensus_80#1 TAAACGTGATCGTCTCGAAGAAACGACACTAAGTGCGGCGTACGATCATGTCCAGTCCAC 539 ************************************************************ consensus_80#0 TGCGCTTTCCCCCGCATCACTTTCTATGTACACGGGATCGGCCTTTTGCGCCCCCTTCCC 440 consensus_80#1 TGCGCTTTCCCCCGCAT------------------------------------------- 556 ***************** consensus_80#0 CCCCAAAACATGTGTTATGTAGTGTATGTGAGTCACTTGGTGGAGTCGCTTCGAATGTCC 500 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TCTCTCTCTCTCCTTCTCTCCCGGTAGGACTGCTGGAAGCGAAACCGCAACAAGAAAAAC 560 consensus_80#1 ------------------------------------------------------------ consensus_80#0 TGTTTAACGTACACTAAGCGAGTTGGGTTTGCTGCCCAC 599 consensus_80#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||