These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1435 fasta sequence [CCGATCCCGTCAATGTAACGCCACCACCACCTGGCAGCGGAACACAAGCCGGCCTGTCGGTGTTAAAGTCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTCCCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTGGCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTACAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTGGAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTAATATCCNGTTTAATGAGGATAGCGAATTACACTACTCGCGTATCTGGNGCATGTAGCCTCCTCCTCTCCACAAAACCAAGACATTACAATAACGAGACATAACGATCATCAATAATCGATTAATAATTAAACAAGAAATAAAAAAAATGTGATCTACATAATAATATCAAGCC] [+] EMBL BM635866 [CCGATCCCGTCAATGTAACGCCACCACCACCTGGCAGCGGAACACAAGCCGGCCTGTCGGTGTTAAAGTCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTCCCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTGGCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTACAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTGGAAGCACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAG ] [+] EMBL BM583630 [ ccGGCAGCGGAACACGAGCCGGTCTGTCGGTGCTAAAATCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTCCCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTGGCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTTCAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTGGAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTCGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGG ] [+] EMBL BM637741 [ GAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCTTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAGTGTAAGTGCAAGGTG ] [+] EMBL BX615057 [ GAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAATGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGTATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCC ] [+] EMBL BX608289 [ CGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAATGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTA ] [+] EMBL BX626348 [ ATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAATGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTAATATCCNGTTTAATGAGGATAGCGAATTACACTACTCGCGTATCTGGNGCATGTAGCCTC ] [+] EMBL BX614627 [ ACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATG ] [+] EMBL BX617057 [ ATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTG TTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTAATATCCTGTTTAATGAGGATAGCGAATTACACTACTCGCGTATCTGGTGCATGTAGCCTCCTCCTCTCCACAAAACCAAGACATTACAATAACGAGACATAACGATCATCAATAATCGATTAATAATTAAACAAGAAATAAAAAAAATGTGATCTACATAATAATATCAAGCC] consensusID : consensus_8030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [GCAGATCGGACGAGGGATGTAAGGACTGGAAGCACGTGTCCAGCCCTGCCACATCTATGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCATCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGGTGGCTTCAGCGGTGGCTTCATGGATCCGCTCGATAAGGTGGAATCGCTGCTGATGCTGCAGGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAGCAAGGGACTNCTAGGTAGAAGATANCANGTGAAATGTAAGGTGTAAGGTGCAGAGGNGCTAGGAGCAGGGAGCGCAAGGGCTTGGGGAAAGACACAAACATATGCGCCGNTGTCCGGGTGATGCGTATATNGCAGTGGCA] [+] EMBL BX466326 [GCAGATCGGACGAGGGATGTAAGGACTGGAAGCACGTGTCCAGCCCTGCCACATCTATGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCATCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGGTGGCTTCAGCGGTGGCTTCATGGATCCGCTCGATAAGGTGGAATCGCTGCTGATGCTGCAGGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAGCAAGGGACTNCTAGGTAGAAGATANCANGTGAAATGTAAGGTGTAAGGTGCAGAGGNGCTAGGAGCAGGGAGCGCAAGGGCTTGGGGAAAGACACAAACATATGCGCCGNTGTCCGGGTGATGCGTATATNGCAGTGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8030#0 CCGATCCCGTCAATGTAACGCCACCACCACCTGGCAGCGGAACACAAGCCGGCCTGTCGG 60 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 TGTTAAAGTCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTC 120 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 CCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTG 180 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 GCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTA 240 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 CAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTG 300 consensus_8030#1 ------------------------------GCAGATCGGACGA-GGGATGTAAGGAC-TG 28 ** * ***** ** * ****** ** consensus_8030#0 GAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATA 360 consensus_8030#1 GAAGCAC-GTGTCCAGCCCTGCCACATCTATGG-TGGGGTAGGGGGTAAGCAGGTAAATA 86 **** ** ******************** **** ************************** consensus_8030#0 TTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACT 420 consensus_8030#1 TTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACT 146 ************************************************************ consensus_8030#0 GCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCG 480 consensus_8030#1 GCAAAACATGGCATCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCG 206 ************* ********************************************** consensus_8030#0 AACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGA 540 consensus_8030#1 AACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGA 266 ************************************************************ consensus_8030#0 TTCCCAAG-TGGCTTCAGCG-TGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCT 598 consensus_8030#1 TTCCCAAGGTGGCTTCAGCGGTGGCTTCATGGATCCGCTCGATAAGGTGGAATCGCTGCT 326 ******** *********** ******************************* ******* consensus_8030#0 GATGCTGCAG-CTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAC--AAGGACTC 655 consensus_8030#1 GATGCTGCAGGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAGCAAGGGACTN 386 ********** ************************************** * ***** consensus_8030#0 T--AGTAGAG----ATAAATGAAGTGTAAG-TGTAAG-TGCA-AGGTGCTAG-AGCAGGG 705 consensus_8030#1 CTAGGTAGAAGATANCANGTGAAATGTAAGGTGTAAGGTGCAGAGGNGCTAGGAGCAGGG 446 ***** * **** ****** ****** **** *** ***** ******* consensus_8030#0 AGCGCAAGGGCTTGGG-AAAGACACAAACAT---TGCCCGTGCC--GGTGATGCGTTTTG 759 consensus_8030#1 AGCGCAAGGGCTTGGGGAAAGACACAAACATATGCGCCGNTGTCCGGGTGATGCGTATAT 506 **************** ************** *** ** * ********** * consensus_8030#0 TGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTA 819 consensus_8030#1 NGCAGTG-GCA------------------------------------------------- 516 * * ** * consensus_8030#0 TACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAA 879 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 CTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGG 939 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 TCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTG 999 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 CTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTG 1059 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 CAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCT 1119 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 GAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTA 1179 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 TTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACG 1239 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 TACCCATCGATATGGCTTCTCTAATATCCNGTTTAATGAGGATAGCGAATTACACTACTC 1299 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 GCGTATCTGGNGCATGTAGCCTCCTCCTCTCCACAAAACCAAGACATTACAATAACGAGA 1359 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 CATAACGATCATCAATAATCGATTAATAATTAAACAAGAAATAAAAAAAATGTGATCTAC 1419 consensus_8030#1 ------------------------------------------------------------ consensus_8030#0 ATAATAATATCAAGCC 1435 consensus_8030#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||