These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1406 fasta sequence [CCGCCCACGCGTCCGGCACAAAGCACCGGTGGTGTGTGCACGGTCGGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTTCTTGCAATCTTTGAGCCGTGTTTTAGTTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGTGAAAACAACAACAACAGAGCGCTTGAGCAGACAGGCAGTGGAAAAGTGGAAAAGTGAAACAAAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAGAACTAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGCCGTTTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGCTGTTTGCCTTCCGAAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCGAAAGAGCAACGTGCATCCAGCCTACAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAATCGCTCGTCCTGCTAAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGCTGTCGATGGGCGGCCATATGGCCTCGCTGGCGGCCACGAACTGGCCGAAACCGCTCGTGCTCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCCATTCCATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGCGGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATACAGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCAGGACATTGACGAAACGAGCGATCTCGTGTGCGGCGATCCGTCCACGGACGTCAACCTGACCGTGATCCGCGAAA] [+] EMBL BM589720 [CCGCCCACGCGTCCGGCACAAAGCACCGGTGGTGTGTGCACGGTCGGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTTCTTGCAATCTTTGAGCCGTGTTTTAGTTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGTGAAAACAACAACAACAGAGCGCTTGAGCAGACAGGCAGTGGAAAAGTGGAAAAGTGAAACAAAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAGAACTAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGCCGTTTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGCTG ] [+] EMBL BM601482 [ ccgAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGCCGTTTGTGTTGCTGTACGGTTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGAAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCG ] [+] EMBL BM627423 [ CCGATTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATATCACGACACCCAACATGCCTCCATCGCTCCTGGACGGGCTCTATCACTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGAT ] [+] EMBL BM611008 [ ccgTCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCGAAAGAGCAACGTGCATCCAGCCTACAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAATCGCTCGTCCTGCTAAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGCTGTCGATGGGCGGCCATATGGCCTCGCTGGCGGCCACGAACTGGCCGAAACCGCTCGTGCTCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCCATTCCATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGCGGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATACAGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCA ] [+] EMBL BM644968 [ ccGCACAGAACGCTCACTTCCAGATACTGCTGCCGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGGATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATTTGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGAAAACCGAAAGAGCAACGTGCATCCAGCCTGCAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAATCGCTCGTCCTGCTGAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGCTGTCGATGGGCGGCCATATGGCTTCGCTGGCGGCCACGAACTGGCCGAAGCCGCTCGTGCTCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCCATTCGATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGCGGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATACAGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCAGGACATTGACGAAACGAGCGATCTCGTGTGCGGCGATCCGTCCACGGACGTCAACCTGACCGTGATCCGCGAAA] consensusID : consensus_8032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 733 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCG--AAAGCACAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCC-GGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTG] [+] EMBL BM647081 [CCGCCCACGCGTCCGCCCACGCGTCCG GCACAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTT ] [+] EMBL BM645612 [ CCGCCCACGCGTCCGATAAAGCACAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCC GGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAATCTACATGCCCGGGCTGGTGCCGGACGTG] [+] EMBL BM632122 [ CCG AAAGCACAAAGCACCGGTGGTGTGTGCACGGTCGGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAAGCTGTGGTGTGATTTCTTGCAATCTTTGAGCCGTGTTTTAATTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGTGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTTGCTCAGCGACGGTTGTGCTGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCA TA TCACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGTTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTTCGAAAGATCATCTCGAACCGGGCCGCCTGCTCACAGCTGGTGCCACGTGACTACCC GGTGGAGATTACCAAGGAGGAAATCCACTCGGACTGCA ] [+] EMBL BM649721 [ ccgAAAGCACCGGTGGTGTGTGCACGGTCGGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCAACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTGCAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGTGAAAACAACAACAATAGCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAACAAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGTGTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCGACGGTTGTGCCGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACACCCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCTTCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCATCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCAGGTGGAGATTACGAAGGAGGAGATCCACTCGGACTGCAAAATACTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8032#0 ------------CCGCCCACGCGTCCG---GCACAAAGCACCGGTGGTGTGTGCACGGTC 45 consensus_8032#1 CCGCCCACGCGTCCGCCCACGCGTCCGAAAGCACAAAGCACCGGTGGTGTGTGCACGGTC 60 *************** ****************************** consensus_8032#0 GGTCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCA 105 consensus_8032#1 GGCCGCTCGGTCGTGACGAGTCGAACGCTCCAACAGACGATTGCGCTACCTACAAACCCA 120 ** ********************************************************* consensus_8032#0 ACGGCAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTTCTTG 165 consensus_8032#1 ACGACAGGCAAGGCCAGTAGTTGCAAACCAGTGAATGAAAGGCTGTGGTGTGATTACTTG 180 *** *************************************************** **** consensus_8032#0 CAATCTTTGAGCCGTGTTTTAGTTGTTTTTGCAACACATAGAAGCAAGGAGAAGAAAAGT 225 consensus_8032#1 CAATCTTTGAGCCGTGTTTTAATCGTTTTTGCAACACATAGAAGCTAGGAGAAGAAAAGT 240 ********************* * ********************* ************** consensus_8032#0 GAAAACAACAACAACAGAGCGCTTGAGCAGACAGGCAGTGGAAAAGTGGAAAAGTGAAAC 285 consensus_8032#1 GAAAACAACAACAATA--GCGCTTGAGCAGACAGTCAGTGGAAAAGTGGAAAAGCGAAAC 298 ************** * **************** ******************* ***** consensus_8032#0 AAAGAAGAGTGGCCTGCTGTTGAAAAAGTGGTGTGTGACAAAACCGATAAGAACTAAAGT 345 consensus_8032#1 AAAGAAGAGTGGCCTGCTGTTGCAAAAGTGGTGTGTGACAAAACCGATAAAAACAAAAGT 358 ********************** *************************** *** ***** consensus_8032#0 GTGCCATTCCTTCCAGACGAATCTCTTCTCTCATCGGTTACAATCCTGAGACGGTTGTGC 405 consensus_8032#1 GTGCCATTCCTTCCAGACGAATCTCTTCCCTCAGCG--------------ACGGTTGTGC 404 **************************** **** ** ********** consensus_8032#0 CGTTTGTGTTGCTGTACGGGTCCTCTTTGTTGTTTGACATCATAT-------CACGACAC 458 consensus_8032#1 CGTTTGTGTTGCTGTGCGGTTCCTCTTTGTTGTTTGACATCACTCTCTAGCACACGACAC 464 *************** *** ********************** ******** consensus_8032#0 CCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGCTCGCTGCTGCTGACCAAGTTCT 518 consensus_8032#1 CCAACATGCCTCCATCGCGCCTGGACGGGCTCTATCGGTCGCTGCTGCTGACCAAGTTCT 524 ************************************* ********************** consensus_8032#0 TCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGCTGTTTGCCTTCCGAAAGATCA 578 consensus_8032#1 TCTGCAAAGGATGGGGCAAGCCGGAAAATCTCGAAAGGTTGTTTGCCTTCCGGAAGATCA 584 ************************************** ************* ******* consensus_8032#0 TCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGA 638 consensus_8032#1 TCTCGAACCGGGCCGCCTGCTCGCAGCTGGTGCCACGTGACTACCCGGTGGAGATTACGA 644 ************************************************************ consensus_8032#0 AGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAA 698 consensus_8032#1 AGGAGGAGATCCACTCGGACTGCAAAATACTGGAGGGCAAGTTCATATCGCCGCTGGAAA 704 ************************************************************ consensus_8032#0 TCTACATGCCCGGGCTGGTGCCGGACGTGGCACAGAACGCTCACTTCCAGATACTGCTGC 758 consensus_8032#1 TCTACATGCCCGGGCTGGTGCCGGACGTG------------------------------- 733 ***************************** consensus_8032#0 CGCTGAAGTGGAACGATGAGCGGTACAAGCCAATTTGCATCCATCTGGCCGGCACCGGGG 818 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ATCATTACTACTGGAAGCGACGGAATCTGATTGCCAAACCGCTGCTGAAGGAAGCGAATT 878 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TGGGTGCAATTATCTTAGAAAATCCTTTCTACGGTTTGCGCAAACCGAAAGAGCAACGTG 938 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CATCCAGCCTACAAAATGTGTCGGACATTTTCGTCATGGGCGGTTGCCTGGTGCTGGAAT 998 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CGCTCGTCCTGCTAAACTGGTGCGAACGCAACGGGTACGGCCCGCTCGGCATTACCGGGC 1058 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TGTCGATGGGCGGCCATATGGCCTCGCTGGCGGCCACGAACTGGCCGAAACCGCTCGTGC 1118 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TCGTACCGTGCCTGTCCTGGTCGACGGCCTCGTCCGTGTTTACCGAGGGCGTCATGAGCC 1178 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ATTCCATCAGCTGGGACGTGCTGGAGACGCAGTACTTCGCCGACGGTAACTTCCGCGAGC 1238 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 GGCTCTCCAAGATGGTGACCGTGGTGGATGACGCATTTGTGGCCGGCAAGCATTTCATAC 1298 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 AGAACTTCAACCAGTCGGTAGAGGAGCTGCGGCAGGACATTGACGAAACGAGCGATCTCG 1358 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TGTGCGGCGATCCGTCCACGGACGTCAACCTGACCGTGATCCGCGAAA 1406 consensus_8032#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||