These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1155 fasta sequence [CCG-TTCTCCTCGAGAGTCTTTAGCCAACAAACGCAGCATCAAAATTTACAGTGCAATTCGTCAGATGGCATATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAATAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAGCAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGTGGTGTGTGTGCCTGCGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAGACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACAAAAATGGCTTCTTTCCGAAATGCCGCACATCACCAGAAGAGCCTGTCGGTGGAGGAACGGGCAGAGATGCGGGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTAAAGGATGCACTCGACCAGGTGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCAAGCTGTCGTACGACGAGTTCGAGTCACTGTGCATGGACCTGAAGGCGAAGGATGTGGCGAGCACGTTCAAGAAGGTGGTCTCGAAGAAGGAAAACCTAGAAACGCTGGGCGGCATGTCGGACTCGTCCGCCGCCGGTACGACTCATTCGGTGCGCGTCGAGGAGCAGCTAGCGTTTAGCGACTGGATCAACTCGAACCTGGTGCACGATCCGGATCTGAAGCACCTGCTGCCGCTCGATTCGGAGGGCAAGCTGCTGTACGACAAGATGAAGGACGGCATACTGCTGTGCAAGATCGTCAACCACTCCTGCCCGGACACGATCGATGAGCGGGCGATCAACAAGAAAAATTTGACCGTGTACACCAAGTTCGAGAACCTGACGCTGGCGTTGGTGTCCTCGCAGGCCATCGGCTGCAACATCGTCAACATTGATGCGCACGATCTCGCCAAAGGCAAGCCGCACCTGGTGCTCGGTCTGCTCTGGCAGATTATTCGCATCGGGCTGTTCAGCCACATCACGCTAGACAGCTGTCCGGGGCTTGCCACGCTGCTCTC] [+] EMBL BM593891 [CCG TTCTCCTCGAGAGTCTTTAGCCAACAAACGCAGCATCAAAATTTACAGTGCAATTCGTCAGATGGCATATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAATAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAGCAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGTGGTGTGTGTGCCTGCGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAGACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACAAAAATGGCTTCTTTCCGAAATGCCGCACATCACCAGAAGAGCCTGTCGGTGGAGGAACGGGCAGAGATGCGGGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTAAAGGATGCACTCGACCAGGTGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCAAGCTGTCGTACGACGAGTTCGAGTCACTGTGCATGGACCTGAAGGCGAAGGATGT ] [+] EMBL BM655407 [CCGATTCTCCTCGAGAGTCTTTAGCCAACAAACGCAGCATCAAAATTTACAGTGCAATTCGTCAGATGGCATATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAATAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAGCAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGTGGTGTGTGTGCCTGCGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAGACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACAAAAATGGCTTCTTTCCGAAATGCCGCACATCACCAGAAGAGCCTGTCGGTGGAGGAACGGGCAGAGATGCGGGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTAAAGGATGCACTCGACCAGGTGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCAAGCTGTCGTACGACGAGTTCGAGTCACT ] [+] EMBL BM631780 [ ccgCTTTAGCCAACAAAC GCATCAAAATTTACAGTGCAATTCGTCAGATGGCATATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAATAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAGCAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGTGGTGTGTGTGCCTGTGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAGACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACAAAAATGGCTTCTTTCCGAAATGCCGCATATCACCAGAAGAGCCTGTCGGTGGAGGAGCGGGCAGAGATGCGAGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTGAAGGATGCACTCGACCAGGTGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCAAGCTGTCGTACGACGAGTTCGAGTCACTGTGCATGGACCTGAAGGCGAAGGATGTGGCGAGCACGTTCAAGAAGGTGGTCTCGAAGAAGGAAAACCTAGAAACGCTGGGCGGCATGTCGGACTCGTCCGCCG ] [+] EMBL BM633796 [ ccGCGAAGGATGTGGCGAGTACGTTCAAGAAGGTGGTTTCGAAGAAAGAAAACCTAGAAACGCTGGGCGGCATGTCGGACTCGTCCGCCGCCGGTACGACTCATTCGGTGCGCGTCGAGGAGCAGCTAGCGTTTAGCGACTGGATCAACTCGAACCTGGTGCACGATCCGGATCTGAAGCACCTGCTGCCGCTCGATTCGGAGGGCAAGCTGCTGTACGACAAGATGAAGGACGGCATACTGCTGTGCAAGATCGTCAACCACTCCTGCCCGGACACGATCGATGAGCGGGCGATCAACAAGAAAAATTTGACCGTGTACACCAAGTTCGAGAACCTGACGCTGGCGTTGGTGTCCTCGCAGGCCATCGGCTGCAACATCGTCAACATTGATGCGCACGATCTCGCCAAAGGCAAGCCGCACCTGGTGCTCGGTCTGCTCTGGCAGATTATTCGCATCGGGCTGTTCAGCCACATCACGCTAGACAGCTGTCCGGGGCTTGCCACGCTGCTCTC] [+] EMBL BM653813 [ ccgGCACGTTCAAGAAGGTGGTCTCCAAGAAGGAAAACCTAGAAACGCTGGGCGGCATGTCGGACTCGTCCGCCGCCGGTACGACACATTCGGTGCGCGTCGAGGAGCAGCTAGCGTTTAGCGACTGGATCAACTCGAACCTGGTGCACGATCCGGATCTGAAGCACCTGCTGCCGCTCGATTCGGAGGGCAAGCTGCTGTACGACAAGATGAAGGACGGCATACTGCTGTGCAAGATCGTCAACCACTCCTGCCCGGACACGATCGATGAGCGGGCGATCAACAAGAAAAATTTGACCGTGTACACCAAGTTCGAGAACCTGACGCTGGCGTTGGTGTCCTCGCAGGCCATCGGTTGCAACATCGTCAACATTGATGCGCACGATCTCGCCAAAGGCAAGCCGCACCTGGTGCTCGGTCTGCTCTGGCAGATTATTCGCATCGGGCTGTTCAGCCACATCACGCTAGACAGCTGTCCGGGCCTTGCCACGCTGCTCTC] [+] EMBL BM628550 [ ccgCGGATCTGAAGCACCTGCTGCCGCTCGATTCGGAGGGCAAGCTGCTGTACGACAAGATGAAGGACGGCATACTGCTGTGCAAGATCGTCAACCACTCCTGCCCGGACACGATCGATGAGCGGGCGATCAACAAGAAAAATTTGACCGTGTACACCAAGTTCGAGAACCTGACGCTGGCGTTGGTGTCCTCGCAGGCCATCGGCTGCAACATCGTCAACATTGATGCGCACGATCTCGCCAAAGGCAAGCCGCACCTGGTGCTCGGTCTGCTCTGGCAGATTATTCGCATCGGGCTGTTCAGCCACATCACGCTAGACAGCTGTCCGGGGCTTGCCACGCTGCTCTC] consensusID : consensus_8071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGACACGTTTCACGCTGTGTGTTTTTACGATCTAAGAACTAGCAACCAAACGCTTCCAACAAACGCTGGTGTGTTACAAAAACAGCATCAAAATTTACAGTGCAATTCGTCAGATGGCATATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAATAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAGCAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGTGGTGTGTGTGCCTGCGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAGACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACAAAAATGGCTTCTTTCCGAAATGCCGCACATCACCAGAAGAGCCTGTCGGTGGAGGAACGGGCAGAGATGCGGGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTAAAGGATGCACTCGACCAGGTGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACAC] [+] EMBL BM621312 [CCGACACGTTTCACGCTGTGTGTTTTTACGATCTAAGAACTAGCAACCAAACGCTTCCAACAAACGCTGGTGTGTTACAAAAACAGCATCAAAATTTACAGTGCAATTCGTCAGATGGCATATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAATAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAGCAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGTGGTGTGTGTGCCTGCGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAGACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACAAAAATGGCTTCTTTCCGAAATGCCGCACATCACCAGAAGAGCCTGTCGGTGGAGGAACGGGCAGAGATGCGGGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTAAAGGATGCACTCGACCAGGTGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACAC] consensusID : consensus_8071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [CCGGCTGTTTCCATTCCATTCCGAGCTCGCGGTATCGGTATCGGTCCCCGTCGTCGTCCGCCATTCCTTACCCGTTTGAAACCTTGTGGCGCGCTCTGCACCCAACCCCTCCCGGACCAGAAGGGAGGTTACAGTTTGGATTCGTTTGTTTATGCTGTCGCGTATATCGTGTGGGCATTAATCATCACAGGACGCACGTATCGGCCGTTCGAAGGATCGTTGCGCAAAGTGCCCTGTGGACACACAGTGACTACTACTATCGTGCCTTGATTTGCCGTGTTTTGAGTGTGTTTAGTTTTTAGGTCGTTTGAAACACAAACAAGTGATCAATCGCCATGGATATACATCAGATCGCCAAGGAAGATGAGCTACTGGAATTCCGCCGCATCTTCACGCCGGAGCTGTATGATCAAATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTAAAGGATGCACTCGACCAGGTGGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCA] [+] EMBL BM640425 [CCGGCTGTTTCCATTCCATTCCGAGCTCGCGGTATCGGTATCGGTCCCCGTCGTCGTCCGCCATTCCTTACCCGTTTGAAACCTTGTGGCGCGCTCTGCACCCAACCCCTCCCGGACCAGAAGGGAGGTTACAGTTTGGATTCGTTTGTTTATGCTGTCGCGTATATCGTGTGGGCATTAATCATCACAGGACGCACGTATCGGCCGTTCGAAGGATCGTTGCGCAAAGTGCCCTGTGGACACACAGTGACTACTACTATCGTGCCTTGATTTGCCGTGTTTTGAGTGTGTTTAGTTTTTAGGTCGTTTGAAACACAAACAAGTGATCAATCGCCATGGATATACATCAGATCGCCAAGGAAGATGAGCTACTGGAATTCCGCCGCATCTTCACGCCGGAGCTGTATGATCAAATCGACACCAACAAAGACGGCTTCATCGAGCTGAAGGAGCTAAAGGATGCACTCGACCAGGTGGGGCTTCAAGCTGCCCGGCTACCAGGTACGCCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCA] [+] EMBL BM654427 [ ccgCCATTCCGAGCTCGCGGTATCGGTATCGGTCCCCGTCGTCGTCCGCCATTCCTTACCCGTTTGAAACCTTGTGGCGCGCTCTGCACCCAACCCCTCCCGGACCAGAAGGGAGGTTACAGTTTGGATTCGTTTGTTTATGCTGTCGCGTATATCGTGTGGGCATTAATCATCACAGGACGCACGTATCGGCCGTTCGAAGGATCGTTGCGCAAAGTGCCCTGTGGACACACAGTGACTACTACTATCGTGCCTTGATTTGCCGTGTTTTGAGTGTGTTTAGTTTTTAGGTCGTTTGAAACACAAACAAGTGATCAATCGCCATGGATATACATCAGATCGCCAAGGAAGATGAGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8071#0 --------------------------------------------------CCGTTCTCCT 10 consensus_8071#1 CCGACACGTTTCACGCTGTGTGTTTTTACGATCTAAGAACTAGCAACCAAACGCTTCCAA 60 consensus_8071#2 ----------------------------------------------CCGGCTGTTTCCAT 14 * * * consensus_8071#0 CGAGAGTCTTTAGCCAACAAACGCAGCATCAAAATTTACAGTGCAATTCGTCAGATGGCA 70 consensus_8071#1 CAAACGCTGGTGTGTTACAAAAACAGCATCAAAATTTACAGTGCAATTCGTCAGATGGCA 120 consensus_8071#2 TCCATTCCG--AGCTCGCGGTATCGGTATCG--GTCCCCGTCGTCGTCCGCCATTCCTTA 70 * * * *** * * * * ** ** * consensus_8071#0 TATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAA 130 consensus_8071#1 TATGAGTGAGTTGTTGTTTTAAAAAGAAAAAAAAAGAAGCAATAAGGCAAATAACGTAAA 180 consensus_8071#2 CCCGTTTGAAACCTTGTGGCGCGCTCTGCACCCAACCC-CTCCCGGACCAGAAGGGAGGT 129 * *** **** * ** * * * * * * consensus_8071#0 TAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAG 190 consensus_8071#1 TAAAGTTGTGTACGCGCAATACTACACACGCCACCAAACCTCGGAGGCACAACACATAAG 240 consensus_8071#2 TACAGTT-TGGATTCGT----TTGTTTATGCTGTCG---------CGTATATCGTGTGGG 175 ** **** ** * ** * * ** * * * * * * * consensus_8071#0 CAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGT 250 consensus_8071#1 CAGTAGTATAAAAATAAAAGCGATCGCCGAGTGCGTGTGTGTGAGAGTGATTGTTAGTGT 300 consensus_8071#2 CATTAATC-----ATCACAGGACGCACGTATCGGCCGTTCGAAGGATCGTTGCGCAAAGT 230 ** ** * ** * ** * * * * ** * ** * * * ** consensus_8071#0 GGTGTGTGTGCCTGCGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAG 310 consensus_8071#1 GGTGTGTGTGCCTGCGTGTGTTTACTGAGAGTACCAGCGGCTAGTGGAGAAGTGAAGCAG 360 consensus_8071#2 GCCCTGTGGACACACA-GTGACTACT---ACTATC-GTGCCTTGATTTGCCGTGTTTTGA 285 * **** * * *** **** * ** * * * ** * * *** consensus_8071#0 ACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACA 370 consensus_8071#1 ACGGGATCATCGATCGCGAAGCCAGCAGTGCAGTGGTGCGAAAGAGCGCGAGATACAACA 420 consensus_8071#2 GTGTGTTTAGTTTTTAGGTCGTTTGAAACACA------------AACAAGTGAT-CAATC 332 * * * * * * * * * ** * * * *** *** consensus_8071#0 AAAATGGCTTCTTTCCGAAATGCCGCACATCACCAGAAGAGCCTGTCGGTGGAGGAACGG 430 consensus_8071#1 AAAATGGCTTCTTTCCGAAATGCCGCACATCACCAGAAGAGCCTGTCGGTGGAGGAACGG 480 consensus_8071#2 GCCATGGATATACATCAGATCGCCAAGGA-----AGATGAGC-TACTGGAATTCCGCCGC 386 **** * * * *** * *** **** * ** ** consensus_8071#0 GCAGAGATGCGGGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTG 490 consensus_8071#1 GCAGAGATGCGGGAAAAGTTTGAGGAGATCGACACCAACAAAGACGGCTTCATCGAGCTG 540 consensus_8071#2 ATCTTCACGCCGGAGCTGTATGATCAAATCGACACCAACAAAGACGGCTTCATCGAGCTG 446 * ** *** ** *** * ********************************* consensus_8071#0 AAGGAGCTAAAGGATGCACTCGACCAGGTGGG-CTTCAAGCTGCCCGGCTACCAGGTACG 549 consensus_8071#1 AAGGAGCTAAAGGATGCACTCGACCAGGTGGG-CTTCAAGCTGCCCGGCTACCAGGTACG 599 consensus_8071#2 AAGGAGCTAAAGGATGCACTCGACCAGGTGGGGCTTCAAGCTGCCCGGCTACCAGGTACG 506 ******************************** *************************** consensus_8071#0 CCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCAAGCTGTCGTA 609 consensus_8071#1 CCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACAC----------------- 642 consensus_8071#2 CCTGATGATCGACGAGTACTCGAACAAGCAGCGATCGCAACACGTCGGCA---------- 556 ******************************************* consensus_8071#0 CGACGAGTTCGAGTCACTGTGCATGGACCTGAAGGCGAAGGATGTGGCGAGCACGTTCAA 669 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 GAAGGTGGTCTCGAAGAAGGAAAACCTAGAAACGCTGGGCGGCATGTCGGACTCGTCCGC 729 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 CGCCGGTACGACTCATTCGGTGCGCGTCGAGGAGCAGCTAGCGTTTAGCGACTGGATCAA 789 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 CTCGAACCTGGTGCACGATCCGGATCTGAAGCACCTGCTGCCGCTCGATTCGGAGGGCAA 849 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 GCTGCTGTACGACAAGATGAAGGACGGCATACTGCTGTGCAAGATCGTCAACCACTCCTG 909 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 CCCGGACACGATCGATGAGCGGGCGATCAACAAGAAAAATTTGACCGTGTACACCAAGTT 969 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 CGAGAACCTGACGCTGGCGTTGGTGTCCTCGCAGGCCATCGGCTGCAACATCGTCAACAT 1029 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 TGATGCGCACGATCTCGCCAAAGGCAAGCCGCACCTGGTGCTCGGTCTGCTCTGGCAGAT 1089 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 TATTCGCATCGGGCTGTTCAGCCACATCACGCTAGACAGCTGTCCGGGGCTTGCCACGCT 1149 consensus_8071#1 ------------------------------------------------------------ consensus_8071#2 ------------------------------------------------------------ consensus_8071#0 GCTCTC 1155 consensus_8071#1 ------ consensus_8071#2 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||