These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1023 fasta sequence [CCGGAACAGCTGACGCCGCACGGTGCGGTACTGTTGGGGCGCGTTACGCGCCGAGCACGCGGCACCGATCAGGTGGTGGTGAAAAACTTTACCCAAGCAATCGCGAAGGTGGCGGCAAATTACGTACCGGCCAAGAAATCGCCCACCGCCATATCGTACAAGGACAGCGGGGTGGACATCGGTGCGGGCGATGAGCTGGTGCAGCGGATTAAACCGTTCGCCAAGTCCACCAACCGGCCCGGTGTGATGGGTGGGCTCGGTGGTTTCGGTGGCCTGTTCAGGCTGCGCGACACGGGCATGAATCTGGACGATCCCATACTCGTGCT-AGGGACGGACGGCGTCGGTACGAAGCTGAAGATTGCGCAGGATTGCGGACTGCACGGTACGGTCGGCATCGATCTGGTGGCCATGTGCGTGAACGACATCATCTGCAACGGTGCGGATCCGCTCGCGTTTCTCGATTACTACGCCTGCGGCCAGCTGGACGTGCCGGTCGCAGCAAAGGTGATCGAAGGCATCGCGGAAGGCTGCCGCCAAGGCAACAGTGCCCTGCTCGGGGGCGAAACGGCCGAAATGCCGGGCATGTACGCGAAGGGCGTGTACGATCTGGCCGGCTTTTCGCTGGGAATAGCCGAGCGCAGCAAGATGCTGCCGCGGATGGACTGCATCTGCCCGGGCGACGTTATCCTGGGACTGCCGTCGAGCGGTGTGCACAGCAATGGGTTCAGCTTGGTGCACAAGATACTGGAATTCACCGGCCACAC-TTACAACGATGTGGCACCG-TTCAGTG-CGACGGGGAAATCGTTCGCCGAGGAGCTGCTCGTCCCGACCCGCATCTATGTGCGCGAGCTGCAGTCCCTGCTGGCGGAA-GGGTTGGTGAAGGCGCTCGCCCACATCACGGGCGGTGGGGTTTACGGAAAAACATTCCCCGCGTCCTACCGGCCGGGCGTGGCCGCCTTCCCTCGACCTTACCGAGCTGCACATTCCGCCCATCTTCCGCTGGATGGCGCAGGCGGGCAATGT] [+] EMBL BM613705 [CCGGAACAGCTGACGCCGCACGGTGCGGTACTGTTGGGGCGCGTTACGCGCCGAGCACGCGGCACCGATCAGGTGGTGGTGAAAAACTTTACCCAAGCAATCGCGAAGGTGGCGGCAAATTACGTACCGGCCAAGAAATCGCCCACCGCCATATCGTACAAGGACAGCGGGGTGGACATCGGTGCGGGCGATGAGCTGGTGCAGCGGATTAAACCGTTCGCCAAGTCCACCAACCGGCCCGGTGTGATGGGTGGGCTCGGTGGTTTCGGTGGCCTGTTCAGGCTGCGCGACACGGGCATGAATCTGGACGATCCCATACTCGTGCT AGGGACGGACGGCGTCGGTACGAAGCTGAAGATTGCGCAGGATTGCGGACTGCACGGTACGGTCGGCATCGATCTGGTGGCCATGTGCGTGAACGACATCATCTGCAACGGTGCGGATCCGCTCGCGTTTCTCGATTACTACGCCTGCGGCCAGCTGGACGTGCCGGTCGCAGCAAAGGTGATCGAAGGCATCGCGGAAGGCTGCCGCCAAGGCAACAGTGCCCTGCTCGGGGGCGAAACGGCCGAA ] [+] EMBL BM585195 [ ccGGGTGGACATCGGTGCGGGCGATGAGCTGGTGCAGCGGATTAAACCGTTCGCCAAGTCCACCAACCGGCCCGGTGTGATGGGTGGGCTCGGTGGTTTCGGTGGCCTGTTCAGGCTGCGCGACACGGGCATGAATCTGGACGATCCCATACTCGTGCT AGGGACGGACGGCGTCGGCACGAAGCTGAAGATTGCGCAGGATTGCGGACTGCACGGTACGGTTGGCATCGATCTGGTGGCCATGTGTGTGAACGACATCATCTGCAACGGGGCGGATCCGCTCGCGTTCCTCGATTACTACGCCTGCGGTCAGCTGGACGTGCCGGTCGCGGCAAAGGTGATCGAGGGCATTGCGGAAGGCTGCCGCCAAGGCAACAGTGCCCTGCTCGGGGGCGAAACGGCCGAAATGCCGGGCATGTACGCGAAGGGAGTGTACGATCTGGCCGGCTTTTCGCTGGGAATAGCCGAGCGCAGCAAGATGCTGCCGCGGATGGAATGCATCTGCCCGGGCGACGTTATCCTGGGACTGCCGTCGAGCGGTGTGCACAGCAATGGGTTCAGCTTGGTGCACAAGATACTGGAATTCACCGGCCACACTTTACAACGATGTGGCACCGTTTCAGTGCCGACGGGGAAATCGTTC ] [+] EMBL BM598432 [ ccGCGATGAGCTGGTGCAGCGGATTAAACCGTTCGCCAAGTCCACCAACCGGCCCGGTGTGATGGGTGGGCTCGGTGGTTTCGGTGGCCTGTTCAGGCTGCGCGACACGGGCATGAATCTGGACGATCCCATACTCGTGCTAAGGGACGGAC ] [+] EMBL BX606544 [ CACCAACCGGCCCGGTGTGATGGGTGGGCTCGGTGGTTTCGGTGGCCTGTTCAGGCTGCGCGACACGGGCATGAATCTGGACGATCCCATACTCGTGCT AGGGACGGACGGCGTCGGCACGAAGCTGAAGATTGCGCAGGATTGCGGACTGCACGGTACGGTCGGCATCGATCTGGTGGCCATGTGCGTGAACGACATCATCTGCAACGGTGCGGATCCGCTCGCGTTCCTCGATTACTACGCCTGCGGTCAGCTGGACGTGCCGGTCGCAGCAAAGGTGATCGAAGGCATCGCGGAAGGCTGCCGCCAAGGCAACAGTGCCCTGCTCGGGGGCGAAACGGCCGAAATGCCGGGCATGTACGCGAAGGGCGTGTACGATCTGGCCGGCTTTTCGCTGGGAATAGCCGAGCGCAGCAAGATGCTGCCGCGGATGGACTGCATCTGCCCGGGCGACGTTATCCTGGGACTGCCGTCGAGCGGTGTGCACAGCAATGGGTTCAGCTTGGTGCACAAGATACTGGAATTCACCGGCCACAC TTACAACGATGTGGCACCG TTCAGTG CGACGGGGAAATCGTTCGCCGAGGAGCTGCTCGTCCCGACCCGCATCTATGTGCGCGAGCTGCAGTCCCTGCTGGCGGAA AGGTTGGTGAAGGCGCTCGCCCACATCACGGGCGGTGGGGTTTACGGAAAAACATTCCCCGCGTCCTACCGGCCGGGCGTGGCCGCCTTCCCTCGACCTT ] [+] EMBL BM629891 [ ccgGGCCCGGTGTGATGGGTGGGCTCGGTGGTTTCGGTGGCCTGTTCAGGCTGCGCGACACGGGCATGAATCTGGACGATCCCATACTCGTGCT AGGGACGGACGGCGTCGGTACGAAGCTGAAGATTGCGCAGGATTGCGGACTGCACGGTACGGTCGGCATCGATCTGGTGGCCATGTGCGTGAACGACATCATCTGCAACGGTGCGGATCCGCTCGCGTTTCTCGATTACTACGCCTGCGGCCAGCTGGACGTGCCGGTCGCAGCAAAGGTGATCGAAGGCATCGCGGAAGGCTGCCGCCAAGGCAACAGTGCCCTGCTCGGGGGCGAAACGGCCGAAATGCCGGGCATGTACGCGAAGGGCGTGTACGATCTGGCCGGCTTTTCGCTGGGAATAGCCGAGCGCAGCAAGATGCTGCCGCGTATGGACTGCATCTGCCCGGGCGACGTTATCCTGGGATTGCCGTCGAGCGGTGTGCACAGCAATGGGTTCAGCTTGGTACACAAGATACTGGAATTCACCGGCCACAC GTACAACGATGTAGCACCG TTCAGTG CGACGGGGAAATCGTTCGCCGAGGAGCTGCTCGTCCCGACCCGCATCTATGTGCGCGAGCTGCAGTCCCTGCTGGCGGAAGGGGTTGGT ] [+] EMBL BM619729 [ GATTGCGGACTGCACGGTACGGTCGGCATCGATCTGGTGGCCATGTGCGTGAACGACATCATCTGCAACGGTGCGGATCCGCTCGCGTTTCTCGATTACTACGCCTGCGGCCAGCTGGACGTGCCGGTCGCAGCAAAGGTGATCGAAGGCATCGCGGAAGGCTGCCGCCAAGGCAACAGTGCCCTGCTCGGGGGCGAAACGGCCGAAATGCCGGGCATGTACGCGAAGGGCGTGTACGATCTGGCCGGCTTTTCGCTGGGAATAGCCGAGCGCAGCAAGATGCTGCCGCGTATGGACTGCATCTGCCCGGGCGACGTTATCCTGGGATTGCCGTCGAGCGGTGTGCACAGCAATGGGTTCAGCTTGGTACACAAGATACTGGAATTCACCGGCCACAC GTACAACGATGTAGCACCG TTCAGTG CGACGGGGAAATCGTTCGCCGAGGAGCTGCTCGTCCCGACCCGCATCTATGTGCGCGAGCTGCAGTCCCTGCTGGCGGAA GGGTTGGTGAAGGCGCTCGCCCACATCACCGGCGG CGGGTTTACGG AAAACATTCCCCGCGTCCTGCCGGCC GGCGTGGCCGCCTT CCTCGACCTTACCGAGCTGCACATTCCGCCCATCTTCCGCTGGATGGCGCAGGCGGGCAATGT] consensusID : consensus_8076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1000 fasta sequence [CCGCGCGCTGGTGCAGCGCATCAAACCGCTGGCACGTGGTACAAATCGTCCCGGTGTGGTGGGAGGACTCGGTGGGTTTGGTGGATTGTTCCGTTTGAACGATGCGACGTACATCAACCGCGAAGGCAAAACGGTGCGCTACAATGACCCGGTGCTGGTGCAGGGTACGGACGGTGTCGGTACGAAGCTAAAGCTGGCCGAAACGCTCAACTGCTGGGACACGATCGGTATCGATCTGGTGGCAATGTGCGCCAACGATGTGCTGTGCGCCGGGGCGGAACCGCTCGCCTTCCTGGACTACATCGCCTGCGGTCGGCTGGAGGTGCCGACGGCGGCAATGATCGTGAAGGGCATTGCGGAGGGTTGCCGCGAGACGAACTGTGCCCTGCTCGGCGGTGAGACGGCCGAAATGCCCTCGATGTACGAGAAGGGCAAATACGATCTGGCCGGCTACTGTGTCGGGGTGGTCGAGCACGATCAAATCCTGCCGCACGTCGATCGCATTCGGGAGGGCGATCTGGTGATCGGTCTGCCGTCGAGCGGTGTGCACAGCAACGGGTTTCAGCTTGGTGAAACCGCATCCTCCGAGCGTACCGGCACGAAGCTAACCGATCCGGCACCGGTTCAGCGAAGGACGGTCGCAACACGTTCCGGCGAAGGAACTGCTCACCCCGAACAAGCCTGTACGTGACACCGCTGCTACCGTTGC-TGCGGCA-GGGGGGCGACACGGTGAAAGCGCTGGCCCACATTACCGGCGGTGGGCTGGTGGAAAATGTGCCCCGCGTCCTGCCCGATGCGCTGGGCGTGGAGGTGGACTTTGCCGAGGTGAAAATTCCACCTATCTTCGGATGGCTGGCGGCGGCCGGTAACGTGACCGAGCGGGAAATGCTGCGTACGTTCAACTGTGGCATCGGCATGGTGGTGATCGTGTCGCAGAACGATCGCACGTGGAAGGAACAGCTGACGCAGCACGGTGCGGTAACTGTTGGGGCGCGTTACG] [+] EMBL BM657699 [CCGCGCGCTGGTGCAGCGCATCAAACCGCTGGCACGTGGTACAAATCGTCCCGGTGTGGTGGGAGGACTCGGTGGGTTTGGTGGATTGTTCCGTTTGAACGATGCGACGTACATCAACCGCGAAGGCAAAACGGTGCGCTACAATGACCCGGTGCTGGTGCAGGGTACGGACGGTGTCGGTACGAAGCTAAAGCTGGCCGAAACGCTCAACTGCTGGGACACGATCGGTATCGATCTGGTGGCAATGTGCGCCAACGATGTGCTGTGCGCCGGGGCGGAACCGCTCGCCTTCCTGGACTACATCGCCTGCGGTCGGCTGGAGGTGCCGACGGCGGCAATGATCGTGAAGGGCATTGCGGAGGGTTGCCGCGAGACGAACTGTGCCCTGCTCGGCGGTGAGACGGCCGAAATGCCCTCGATGTACGAGAAGGGCAAATACGATCTGGCCGGCTACTGTGTCGGGGTGGTCGAGCACGATCAAATCCTGCCGCACGTCGATCGCATTCGGGAGGGCGATCTGGTGATCGGTCTGCCGTCGAGCGGTGTGCACAGCAACGGGTTTCAGCTTGGTGAAACCGCATCCTCCGAGCGTACCGGCACGAAGCTAACCGATCCGGCACCGGTTCAGCGAAGGACGGTCGCAACACGTTCCGGCGAAGGAACTGCTCACCCCGAACAAGCCTGTACGTGACACCGCTGCTACCGTTTCTTGCCGCAGGGGGGGCCACCCGGGGAA ] [+] EMBL BM603198 [ ccgGCCCTCGATGTACGAGAAGGGCAAATACGATCTGGCCGGCTACTGTGTCGGGGTGGTCGAGCACGATCAAATCCTGCCGCACGTCGATCGCATTCGGGAGGGCGATCTGGTGATCGGTCTGCCGTCGAGCGGTGTGCACAGCAACGGG TTCAGCTTGGTG AACCGCATCCT CGAGCGTACCGGCACGAAGCTAACCGATCCGGCACC GTTCAGCG AGGACGGTCGCAGCACGTT CGGCG AGGAACTGCTCACACCG ACGAGCCTGTACGTGACACCGCTGCTACCGTTGC TGCGGCA GGGGGGCGACACGGTGAAAGCGCTGGCCCACATTACCGGCGGTGGGCTGGTGGAAAATGTGCCCCGCGTCCTGCCCGA ] [+] EMBL BX602896 [ GTACGTGACGCCGCTGCTACCGTTGC TGCGGCA GTGGGGCGACACGGTGAAAGCGCTGGCCCACATTACCGGCGGTGGGCTGGTGGAAAATGTGCCCCGCGTCCTGCCCGATGCGCTGGGCGTGGAGGTGGACTTTGCCGAGGTGAAAATTCCACCTATCTTCGGATGGCTGGCGGCGGCCGGTAACGTGACCGAGCGGGAAATGCTGCGTACGTTCAACTGTGGCATCGGCATGGTGGTGATCGTGTCGCAGAACGATCGCACGTGGAAGGAACAGCTGACGCAGCACGGTGCGGTAACTGTTGGGGCGCGTTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8076#0 CCGGAACAGCTGACGCCGCACGGTGCGGTACTGTTGGGGCGCGTTACGCGCCGAGCACGC 60 consensus_8076#1 ------------------------------------------------------------ consensus_8076#0 GGCACCGATCAGGTGGTGGTGAAAAACTTTACCCAAGCAATCGCGAAGGTGGCGGCAAAT 120 consensus_8076#1 ------------------------------------------------------------ consensus_8076#0 TACGTACCGGCCAAGAAATCGCCCACCGCCATATCGTACAAGGACAGCGGGGTGGACATC 180 consensus_8076#1 ------------------------------------------------------------ consensus_8076#0 GGTGCGGGCGATGAGCTGGTGCAGCGGATTAAACCGTTCGCCAAGTCCACCAACCGGCCC 240 consensus_8076#1 --------CCGCGCGCTGGTGCAGCGCATCAAACCGCTGGCACGTGGTACAAATCGTCCC 52 * * ************ ** ****** * ** ** ** ** *** consensus_8076#0 GGTGTGATGGGTGGGCTCGGTGGTTTCGGTGGCCTGTTCAGGCTGCGCGACACGG---GC 297 consensus_8076#1 GGTGTGGTGGGAGGACTCGGTGGGTTTGGTGGATTGTTCCGTTTGAACGATGCGACGTAC 112 ****** **** ** ******** ** ***** ***** * ** *** ** * consensus_8076#0 ATGAATCTGGA---------------------CGATCCCATACTCGTGCTAGGGACGGAC 336 consensus_8076#1 ATCAACCGCGAAGGCAAAACGGTGCGCTACAATGACCCGGTGCTGGTGCAGGGTACGGAC 172 ** ** * ** ** ** * ** **** ** ****** consensus_8076#0 GGCGTCGGTACGAAGCTGAAGATTGCGCAGGATTGCGGACTGCACGG-TACGGTCGGCAT 395 consensus_8076#1 GGTGTCGGTACGAAGCTAAAGCTGGC-CGAAACGCTCAACTGCTGGGACACGATCGGTAT 231 ** ************** *** * ** * * ***** ** *** **** ** consensus_8076#0 CGATCTGGTGGCCATGTGCGTGAACGACATCATCTGCAACGGTGCGGATCCGCTCGCGTT 455 consensus_8076#1 CGATCTGGTGGCAATGTGCGCCAACGATGTGCTGTGCGCCGGGGCGGAACCGCTCGCCTT 291 ************ ******* ***** * * *** *** ***** ******** ** consensus_8076#0 TCTCGATTACTACGCCTGCGGCCAGCTGGACGTGCCGGTCGCAGCAAAGGTGATCGAAGG 515 consensus_8076#1 CCTGGACTACATCGCCTGCGGTCGGCTGGAGGTGCCGACGGCGGCAATGATCGTGAAGGG 351 ** ** *** ********* * ****** ****** ** **** * * * * ** consensus_8076#0 CATCGCGGAAGGCTGCCGCCAAGGCAACAGTGCCCTGCTCGGGGGCGAAACGGCCGAAAT 575 consensus_8076#1 CATTGCGGAGGGTTGCCGCGAGACGAACTGTGCCCTGCTCGGCGGTGAGACGGCCGAAAT 411 *** ***** ** ****** * *** ************* ** ** *********** consensus_8076#0 GCCGGGCATGTACGCGAAGGGCGTGTACGATCTGGCCGGCTTTTCGCTGGGAATAGCCGA 635 consensus_8076#1 GCCCTCGATGTACGAGAAGGGCAAATACGATCTGGCCGGCTACTGTGTCGGGGTGGTCGA 471 *** ******* ******* **************** * * ** * * *** consensus_8076#0 GCGCAGCAAGATGCTGCCGCGGATGGACTGCATCTGCCCGGGCGACGTTATCCTGGGACT 695 consensus_8076#1 GCACGATCAAATCCTGCCGCACGTCGATCGCATTCGGGAGGGCGATCTGGTGATCGGTCT 531 ** * * ** ******* * ** **** * ****** * * * ** ** consensus_8076#0 GCCGTCGAGCGGTGTGCACAGCAATGGGTT-CAGCTTGGTGCA-CAAGATACTG-GAATT 752 consensus_8076#1 GCCGTCGAGCGGTGTGCACAGCAACGGGTTTCAGCTTGGTGAAACCGCATCCTCCGAGCG 591 ************************ ***** ********** * * ** ** ** consensus_8076#0 CACCGGCCACACTTACAACGATGTGGCACCG-TTCAGTGC--GACGG--GGAAATCGTTC 807 consensus_8076#1 TACCGGCACGAAGCTAACCGATCCGGCACCGGTTCAGCGAAGGACGGTCGCAACACGTTC 651 ****** * * **** ******* ***** * ***** * ** ***** consensus_8076#0 --GCCGAGGAGCTGCTCGTCCCGACCC-GCATCTATGTGCGCGAGCTGCAGTCCCTGCTG 864 consensus_8076#1 CGGCGAAGGAACTGCTCACCCCGAACAAGCCTGTACGTGACACCGCTGCTACCGTTGCTG 711 ** **** ****** ***** * ** * ** *** ***** * ***** consensus_8076#0 --GCGGAAGGGT----TGGTGAAGGCGCTCGCCCACATCACGGGCGGTGGGGTTTACGGA 918 consensus_8076#1 CGGCAGGGGGGCGACACGGTGAAAGCGCTGGCCCACATTACCGGCGGTGGG--CTGGTGG 769 ** * *** ****** ***** ******** ** ********* * * consensus_8076#0 AAAACATTCCCCGCGTCCTACCGGCCGGGCGTGGCCGCCTTCCCTCGACCTTACCGAGCT 978 consensus_8076#1 AAAATGTGCCCCGCGTCCTGCCCGATGCGC-TGGGCGTGGAGG-TGGACTTTGCCGAGGT 827 **** * *********** ** * * ** *** ** * *** ** ***** * consensus_8076#0 GCACATTCCGCCCATCTTCCGCTGGATGGCGCAGGCGGGCAATGT--------------- 1023 consensus_8076#1 GAAAATTCCACCTATCTTCGGATGGCTGGCGGCGGCCGGTAACGTGACCGAGCGGGAAAT 887 * * ***** ** ****** * *** ***** *** ** ** ** consensus_8076#0 ------------------------------------------------------------ consensus_8076#1 GCTGCGTACGTTCAACTGTGGCATCGGCATGGTGGTGATCGTGTCGCAGAACGATCGCAC 947 consensus_8076#0 ----------------------------------------------------- consensus_8076#1 GTGGAAGGAACAGCTGACGCAGCACGGTGCGGTAACTGTTGGGGCGCGTTACG 1000 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||