These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1144 fasta sequence [GCGCACATGCCTGCCTTTTNGTTGTATTTTTTTTCAATTAAACAGTATATATATTTCTTATAAGTTTTGGGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTTATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGCTCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTATTTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAGATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGAACCTGCGCCTCCGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA-A-TGGGACGGTCCTCCCT-GATGCGCTCCAGCGCAGCCGG-ACAGTCTAG-CCGGAACTTCTT-CACGAACGAGTCG-ATCGTCGGAAACTC-GTCGCCCTG-CACAATCTT--GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACCAAAAATAATAAATTTCACAGCACTGCGACGAAACTTTTGCATT] [+] EMBL BX466710 [GCGCACATGCCTGCCTTTTNGTTGTATTTTTTTTCAATTAAACAGTATATATATTTCTTATAAGTTTTGGGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTTATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGCTCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTATTTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAGATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGAACCTGCGCCTCCGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTANACTGGGACGGTCCTCCCTGGATGCGCTCCAGCGCAGCCGGAACAGTCTAGCCCGGAACTTCTTCCACGAACGAGTCGAATCGTCGGAAACTCGGTCG CCTGACACAATCTTTGGAACGCAACCTTGTga ] [-] EMBL BX612757 [ GGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTTATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGCTCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTATTTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAGATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGCACCTGTGCCTCCGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGC ATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTT ] [-] EMBL BX615307 [ CGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTAGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGTCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTTGTACAATTACTTCTCGGGTGTTGGGAGTTTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAATGCAATTTGATCTCCGCGTGATGTAATCCGTT ] [-] EMBL BX622648 [ CCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACCAAAAATAATAAATTTCACAGCACTGCGACGAAACTTTTGCATT] [-] EMBL BX620403 [ GGAATCAGCGAGAGCCGGTTCATGGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCNGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACG ] [-] EMBL BX622795 [ CATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACCAAAAATAATAAATT ] consensusID : consensus_8080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 750 fasta sequence [GTACCGTTTATCTGTTACCACCAATGTGGCCANCTCGGCCTCCAGATTAATCCTGTCGCCGTATTTCGACCGNCACTTNGTTCCATTGANGCGTGAATGAAACANTGGAACCACAATGGTCGGCAAATGCACTATTGCTTCAGTGTTTGCCCCTTGTTCGTTTCCCGGATGNGTTTAAATGGNACNGGTTCCCTCCCCCTGGAGTGCCGCTTCCAGCGCAGCCGGGACAAGTCTAGCCCNGGAACTTGCTTCACGAACGAGTCGTATCGTCGGANACTCGTCG-CCCTGCACA-ATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGC-TTTTTCCAGATTTTGCAGC-GTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCC-GGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCC-TGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT-TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGA-ATA-ACCA-AAATAATAAATTTCACAGC-CTGCGACGAAACTTTGCATTGGATTGCC----CCTCGGGGGATC] [-] EMBL AL932201 [GTACCGTTTATCTGTTACCACCAATGTGGCCANCTCGGCCTCCAGATTAATCCTGTCGCCGTATTTCGACCGNCACTTNGTTCCATTGANGCGTGAATGAAACANTGGAACCACAATGGTCGGCAAATGCACTATTGCTTCAGTGTTTGCCCCTTGTTCGTTTCCCGGATGNGTTTAAATGGNACNGGTTCCCTCCCCCTGGAGTGCCGCTTCCAGCGCAGCCGGGACAAGTCTAGCCCNGGAACTTGCTTCACGAACGAGTCGTATCGTCGGANACTCGTCG CCCTGCACANATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGNCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCATTTTTCCAGATTTTGCAGCAGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCAGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCGTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGTTTCTTTGTACTTTGTGCTGCCTAGTTTGTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGAGAAGGCGAGTGCAATNTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAAANATATNCCAGAAATAATAAATTTCTCAGCACTGCGACGAAACTNTGCATT GATTG ] [-] EMBL AL930842 [ GAAACTCGTCGCCCCTGCACA ATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGC TTTTTCCAGATTTTGCAGC GTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCC GGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCC TGCATTTTTGTGCGTGGTACAATTACTTCTCGGGT TTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGA ATA ACCA AAATAATAAATTTCACAGC CTGCGACGAACTTTTGCATTGGATTGCCATAACCTCGGGGGATC] [-] EMBL AL931187 [ TCG CCCTGCACA ATCTTGACCCCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGC TTTTTCCAGATTTTGCAGC GTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCC GGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCC TGCATTCTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGA ATA ACCA AAATAATAAATTTCACAGC CTGCGACG AACTTTGCATTGGATTGNC CCTCGGGCGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8080#0 GCGCACATGCCTGCCTTTTNGTTGTATTTTTTTTCAATTAAACAGTATATATATTTCTTA 60 consensus_8080#1 ------------------------------------------------------------ consensus_8080#0 TAAGTTTTGGGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTT 120 consensus_8080#1 ------------------------------------------------------------ consensus_8080#0 ATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGC 180 consensus_8080#1 ------------------------------------------------------------ consensus_8080#0 TCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTAT 240 consensus_8080#1 ------------------------------------------------------------ consensus_8080#0 TTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAG 300 consensus_8080#1 ------------------------------------------------------------ consensus_8080#0 ATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGAACCTGCGCCTC 360 consensus_8080#1 ------------------------------------------------------------ consensus_8080#0 CGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTC 420 consensus_8080#1 ------------------------------------------------------------ consensus_8080#0 CTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCG 480 consensus_8080#1 ------------------------------GTACCGTTTATCTGTTACCACCAATGTGGC 30 * *** ** ** *** *** * consensus_8080#0 CAGCTCGGGCTGCAAATCATCCATCGC-CCGTATCTCGAGCCGCAGCTTGT-CCAT--GA 536 consensus_8080#1 CANCTCGGCCTCCAGATTAATCCTGTCGCCGTATTTCGACCGNCACTTNGTTCCATTGAN 90 ** ***** ** ** ** * * * * ****** **** * ** * ** **** consensus_8080#0 GCGTGA-TGAAC--ATGGA--CACAATG-TCGGCAA-TGCACT--TGCTC--GTGTTG-- 583 consensus_8080#1 GCGTGAATGAAACANTGGAACCACAATGGTCGGCAAATGCACTATTGCTTCAGTGTTTGC 150 ****** **** **** ******* ******* ****** **** ***** consensus_8080#0 CCCTTGTCG---TCCCGGATGGT----AATGGGACGG-----TCCTCCCTGATGCGC--- 628 consensus_8080#1 CCCTTGTTCGTTTCCCGGATGNGTTTAAATGGNACNGGTTCCCTCCCCCTGGAGTGCCGC 210 ******* ********* ***** ** * * ***** * ** consensus_8080#0 -TCCAGCGCAGCCGGAC--AGTCTAGCC--GGAACTT-CTTCACGAACGAGTCG-ATCGT 681 consensus_8080#1 TTCCAGCGCAGCCGGGACAAGTCTAGCCCNGGAACTTGCTTCACGAACGAGTCGTATCGT 270 ************** ********* ******* **************** ***** consensus_8080#0 CGGAAACTCGTCGCCCTGCACAATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGA 741 consensus_8080#1 CGGANACTCGTCGCCCTGCACAATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGA 330 **** ******************************************************* consensus_8080#0 GCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATT 801 consensus_8080#1 GCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATT 390 ************************************************************ consensus_8080#0 TTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCT 861 consensus_8080#1 TTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCT 450 ************************************************************ consensus_8080#0 CGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGT 921 consensus_8080#1 CGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGT 510 ************************************************************ consensus_8080#0 GCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT 981 consensus_8080#1 GCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT 570 ************************************************************ consensus_8080#0 TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACC 1041 consensus_8080#1 TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACC 630 ************************************************************ consensus_8080#0 TCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACC 1101 consensus_8080#1 TCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACC 690 ************************************************************ consensus_8080#0 AAAAATAATAAATTTCACAGCACTGCGACGAAACTTTTGCATT----------------- 1144 consensus_8080#1 AAAA-TAATAAATTTCACAGC-CTGCGACGAAACTTT-GCATTGGATTGCCCCTCGGGGG 747 **** **************** *************** ***** consensus_8080#0 --- consensus_8080#1 ATC 750 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||