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Anopheles gambiae
cluster # 8082 cluster # 8082       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8082#0 length = 1204 sequences # 1  
consensus_8082#1 length = 1029 sequences # 4  
consensus_8082#2 length = 812 sequences # 1  
consensus_8082#3 length = 541 sequences # 1  
consensus_8082#4 length = 469 sequences # 2  

consensusID : consensus_8082#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1204
fasta sequence
                              [AGGCACGAATCTCCCCGAGGGTTAATTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGCGTTTGGTGTAGCGCGGTANCACACGGGAAAAATGGCTCCANTCGGCGTGTGAGGTAAGATTCAATGCCACAGAGNGTCATGGTAGACCGACCGTTAGCAGGCANCTGAGAGCAAAGTTGGCCCCAGNCCCATGTCCTAGTGTACCACGCAAAGGTAGAAGCGACNGAGAGGGCCGGAGGGGCCAATCGTTCCGAGGTGTATCCNGTGGTAGACCTTATCGGCAGCCCGGGACGAGCGCTCACGATTGGTAACCGGGGTCCGACAGCCGCTTTCTGNGCCCGAATCNAGCGGTTCCCAATTCCAATGCGCCAATCCNTCGGCATGGGCCCTTGCCCCAGGGCGTGAACTTACGCGAAAGTTTAGTTGACGCCNGTGGCCCGGNCACCCGCAGCTTTGTGCTTTGGTCCACACCTTAGGNCTTTGGACTTNGGTTATGCCCACTTTGGTGCGCCCTTTTTGGCCCCATGGTGGTTTCCNNCCTGGTTTAACCCTCTCGTTCTTCGGGGGGAGAAGTACCCCTCTCCCAAAGCAGAGAGTCCCTAGGCCAAACCAANGACGGGCCAAGTCAGAAACCCGGAGGTCCTGGGGTTAAAAACCCCGGCAACACCATNGGTAACGACTGGTGGTTCCGAGGTGGCCACTTTTTGCCGCCCCCCAAATTAAAAGCCCCCAGGGTGTGCGCCCACCTCCAGGATCAATACTTTGCCCTTTGGTTAGGCCCCCCCCANGGGGGGTTTTACCCTGGAAAGGGAGAATGAAGGCGCACCCACATGGGTNGTGAANTTTNCCACCCCAGAGATGTTGTGGGGNCCCAAAATAGGTTATAGGGCAAAAGACNGGCTTGTGTTTGTTCCCCANAACACTCTGGGAGTTTCGGGGACCGACCCTAAATAGGGGTTTAGGGGGCCTCNGGGAAAATTTTNCCCTGAGGAAAAGTTGACCCCAGGGTTTTTATCCACCCAGGGTTTAAAGACCCCACCCCACCTAAAANGGGTTTTAGTGTGCCCCCCAAGATTACACNCACCTACCC]

[+] EMBL AL696892             [AGGCACGAATCTCCCCGAGGGTTAATTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGCGTTTGGTGTAGCGCGGTANCACACGGGAAAAATGGCTCCANTCGGCGTGTGAGGTAAGATTCAATGCCACAGAGNGTCATGGTAGACCGACCGTTAGCAGGCANCTGAGAGCAAAGTTGGCCCCAGNCCCATGTCCTAGTGTACCACGCAAAGGTAGAAGCGACNGAGAGGGCCGGAGGGGCCAATCGTTCCGAGGTGTATCCNGTGGTAGACCTTATCGGCAGCCCGGGACGAGCGCTCACGATTGGTAACCGGGGTCCGACAGCCGCTTTCTGNGCCCGAATCNAGCGGTTCCCAATTCCAATGCGCCAATCCNTCGGCATGGGCCCTTGCCCCAGGGCGTGAACTTACGCGAAAGTTTAGTTGACGCCNGTGGCCCGGNCACCCGCAGCTTTGTGCTTTGGTCCACACCTTAGGNCTTTGGACTTNGGTTATGCCCACTTTGGTGCGCCCTTTTTGGCCCCATGGTGGTTTCCNNCCTGGTTTAACCCTCTCGTTCTTCGGGGGGAGAAGTACCCCTCTCCCAAAGCAGAGAGTCCCTAGGCCAAACCAANGACGGGCCAAGTCAGAAACCCGGAGGTCCTGGGGTTAAAAACCCCGGCAACACCATNGGTAACGACTGGTGGTTCCGAGGTGGCCACTTTTTGCCGCCCCCCAAATTAAAAGCCCCCAGGGTGTGCGCCCACCTCCAGGATCAATACTTTGCCCTTTGGTTAGGCCCCCCCCANGGGGGGTTTTACCCTGGAAAGGGAGAATGAAGGCGCACCCACATGGGTNGTGAANTTTNCCACCCCAGAGATGTTGTGGGGNCCCAAAATAGGTTATAGGGCAAAAGACNGGCTTGTGTTTGTTCCCCANAACACTCTGGGAGTTTCGGGGACCGACCCTAAATAGGGGTTTAGGGGGCCTCNGGGAAAATTTTNCCCTGAGGAAAAGTTGACCCCAGGGTTTTTATCCACCCAGGGTTTAAAGACCCCACCCCACCTAAAANGGGTTTTAGTGTGCCCCCCAAGATTACACNCACCTACCC]


>consensus_8082#0 AGGCACGAATCTCCCCGAGGGTTAATTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAG TTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCAC AGCGTGATAGGAGCGAAAATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGCGTTTGG TGTAGCGCGGTANCACACGGGAAAAATGGCTCCANTCGGCGTGTGAGGTAAGATTCAATG CCACAGAGNGTCATGGTAGACCGACCGTTAGCAGGCANCTGAGAGCAAAGTTGGCCCCAG NCCCATGTCCTAGTGTACCACGCAAAGGTAGAAGCGACNGAGAGGGCCGGAGGGGCCAAT CGTTCCGAGGTGTATCCNGTGGTAGACCTTATCGGCAGCCCGGGACGAGCGCTCACGATT GGTAACCGGGGTCCGACAGCCGCTTTCTGNGCCCGAATCNAGCGGTTCCCAATTCCAATG CGCCAATCCNTCGGCATGGGCCCTTGCCCCAGGGCGTGAACTTACGCGAAAGTTTAGTTG ACGCCNGTGGCCCGGNCACCCGCAGCTTTGTGCTTTGGTCCACACCTTAGGNCTTTGGAC TTNGGTTATGCCCACTTTGGTGCGCCCTTTTTGGCCCCATGGTGGTTTCCNNCCTGGTTT AACCCTCTCGTTCTTCGGGGGGAGAAGTACCCCTCTCCCAAAGCAGAGAGTCCCTAGGCC AAACCAANGACGGGCCAAGTCAGAAACCCGGAGGTCCTGGGGTTAAAAACCCCGGCAACA CCATNGGTAACGACTGGTGGTTCCGAGGTGGCCACTTTTTGCCGCCCCCCAAATTAAAAG CCCCCAGGGTGTGCGCCCACCTCCAGGATCAATACTTTGCCCTTTGGTTAGGCCCCCCCC ANGGGGGGTTTTACCCTGGAAAGGGAGAATGAAGGCGCACCCACATGGGTNGTGAANTTT NCCACCCCAGAGATGTTGTGGGGNCCCAAAATAGGTTATAGGGCAAAAGACNGGCTTGTG TTTGTTCCCCANAACACTCTGGGAGTTTCGGGGACCGACCCTAAATAGGGGTTTAGGGGG CCTCNGGGAAAATTTTNCCCTGAGGAAAAGTTGACCCCAGGGTTTTTATCCACCCAGGGT TTAAAGACCCCACCCCACCTAAAANGGGTTTTAGTGTGCCCCCCAAGATTACACNCACCT ACCC



consensusID : consensus_8082#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1029
fasta sequence
                              [CATTAAAAGGTGTGCTGCGCGAGGGAAAGCTTATGAGCCGTGTCTCATTCGCCGAGGACTTCCAAGTTATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACATAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTT-GGATCCCACGCGCACACGCACACCGTCGTAACGAAGAAGGTCGGCATTCCCATACCGGCCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCCAGTGCCAGTGAAGGTTCACGTGCCAGTGCCGATCGATCGTCCGTACCCAGTGGCCATCCCGAGACCGTATGCTGTACCGGTGGAAAAACCCTACCCGGTGCCAGTCGATCGTCCGTACCCGGTGGCCGTGCCACATCCCGTTCCCGTGCCGGTAATTAAGCACGTGGGCTACCCTGTCCCGGCGCCGGTCCCGGTTGCCATTCCGAAGCCGGTGCCCGTGCCCGTCCATACGCCGTACGTCGTGGAAAAGCCCGTCGTTGCTGCCGTTGCCCCGGACCCATGGGCTACCGCAAAGCTGTGGTAAATGCGTAGAACTGTTTGCATT]

[+] EMBL BX626560             [CATTAAAAGGTGTGCTGCGCGAGGGAAAGCTTATGAGCCGTGTCTCATTCGCCGAGGACTTCCAAGTTATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACATAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTANGACTGGCTGCCCCTGCTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX623661             [                                                                   TATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACATAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTT GGATCCCACGCGCACACGCACACCGTCG                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX616142             [                                                                                                                                                        AAACTGTGCCTTCCCTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTTGGGAT CCACGCGCACACGCACACCGTCGTAACGAAGAAGGTCGGCATTCCCATACCGGCCCCGTACGCTGTGCCGGTCG                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX608352             [                                                                                                                                                                      CTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTT GGATCCCACGCGCACACGCACACCGTCGTAACGAAGAAGGTCGGCATTCCCATACCGGCCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCCAGTGCCAGTGAAGGTTCACGTGCCAGTGCCGATCGATCGTCCGTACCCAGTGGCCATCCCGAGACCGTATGCTGTACCGGTGGAAAAACCCTACCCGGTGCCAGTCGATCGTCCGTACCCGGTGGCCGTGCCACATCCCGTTCCCGTGCCGGTAATTAAGCACGTGGGCTACCCTGTCCCGGCGCCGGTCCCGGTTGCCATTCCGAAGCCGGTGCCCGTGCCCGTCCATACGCCGTACGTCGTGGAAAAGCCCGTCGTTGCTGCCGTTGCCCCGGACCCATGGGCTACCGCAAAGCTGTGGTAAATGCGTAGAACTGTTTGCATT]


>consensus_8082#1 CATTAAAAGGTGTGCTGCGCGAGGGAAAGCTTATGAGCCGTGTCTCATTCGCCGAGGACT TCCAAGTTATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACA TAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAAC GAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTG GAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAA ATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAA GGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTC CAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCG GCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCC GCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCC GGTCCGTACCTTGGATCCCACGCGCACACGCACACCGTCGTAACGAAGAAGGTCGGCATT CCCATACCGGCCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCCAGTGCCAGTGAAGGTT CACGTGCCAGTGCCGATCGATCGTCCGTACCCAGTGGCCATCCCGAGACCGTATGCTGTA CCGGTGGAAAAACCCTACCCGGTGCCAGTCGATCGTCCGTACCCGGTGGCCGTGCCACAT CCCGTTCCCGTGCCGGTAATTAAGCACGTGGGCTACCCTGTCCCGGCGCCGGTCCCGGTT GCCATTCCGAAGCCGGTGCCCGTGCCCGTCCATACGCCGTACGTCGTGGAAAAGCCCGTC GTTGCTGCCGTTGCCCCGGACCCATGGGCTACCGCAAAGCTGTGGTAAATGCGTAGAACT GTTTGCATT



consensusID : consensus_8082#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 812
fasta sequence
                              [AGAATTGCCCAGGGTTTGAGGACTTCAAGGTTATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACATAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGGCGGTGGGAAGTTCAAACACGAAGCAGTAACACCGACGGACGAANCAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCGCCCGTGTACGGTCACGCCTTTGCCCATCACGTCATCAGCATCTGCTGCTGCCGCGGATTCCATTTGCACCGGCGTAGGACTGGCTGGCCCTGCTGCTGTGCCTGCCTTGCCGGTCCGTACCTTGGATCCACGCGCACACGCACACGTCGTAACGAAGAAGGTCGGATTCCCATACCGGCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCAGTGCCAGTGAAGGTTCACGTGCCAGTGCCGATCGATCGTCCGTACCCAGTGGCATCCCGAGACCGTATTGCTGTACCGGTGGAAAAACCTACCGGTGCCAGTCGATCGTCCGTACCGGTGGCGTGCCACATNCCGTTCCGTGCGGTAATTAA]

[+] EMBL AL693598             [AGAATTGCCCAGGGTTTGAGGACTTCAAGGTTATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACATAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGGCGGTGGGAAGTTCAAACACGAAGCAGTAACACCGACGGACGAANCAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCGCCCGTGTACGGTCACGCCTTTGCCCATCACGTCATCAGCATCTGCTGCTGCCGCGGATTCCATTTGCACCGGCGTAGGACTGGCTGGCCCTGCTGCTGTGCCTGCCTTGCCGGTCCGTACCTTGGATCCACGCGCACACGCACACGTCGTAACGAAGAAGGTCGGATTCCCATACCGGCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCAGTGCCAGTGAAGGTTCACGTGCCAGTGCCGATCGATCGTCCGTACCCAGTGGCATCCCGAGACCGTATTGCTGTACCGGTGGAAAAACCTACCGGTGCCAGTCGATCGTCCGTACCGGTGGCGTGCCACATNCCGTTCCGTGCGGTAATTAA]


>consensus_8082#2 AGAATTGCCCAGGGTTTGAGGACTTCAAGGTTATTAAGTGTTCCCGCGGTATAGAGTGAC TCTACTGGGATAAAGCAGGAAACATAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAAC TGTGCCTTCCCTGTGGGATCGAACGAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAA GACTAGTTTTGCGTGATAACGGTGGAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGA GTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGC GTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGGCGGTGGGAAGTTCAAACACGAAGC AGTAACACCGACGGACGAANCAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCA TCTTTGGTTTCGGTAGCTATGCGCCGGCGCCCGTGTACGGTCACGCCTTTGCCCATCACG TCATCAGCATCTGCTGCTGCCGCGGATTCCATTTGCACCGGCGTAGGACTGGCTGGCCCT GCTGCTGTGCCTGCCTTGCCGGTCCGTACCTTGGATCCACGCGCACACGCACACGTCGTA ACGAAGAAGGTCGGATTCCCATACCGGCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCA GTGCCAGTGAAGGTTCACGTGCCAGTGCCGATCGATCGTCCGTACCCAGTGGCATCCCGA GACCGTATTGCTGTACCGGTGGAAAAACCTACCGGTGCCAGTCGATCGTCCGTACCGGTG GCGTGCCACATNCCGTTCCGTGCGGTAATTAA



consensusID : consensus_8082#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence
                              [GGCAAGAATTGCCCCGAGGTTTATTTTTAAAACTTTAAAGCGTAGATTAATAATTTATTCTGTATCAATTATCCTACCTATTACCTACTGCACGCATATCGTGCCGCGATCGTTTCAGGACAATCTTAATAGCATTTATATTTTGGTTGAGTAGCTTAAAAGTAATCGTTTACCTTAGCTTAATGCAAACAGCTTCTACGCATTTACCACAGCTTTGCGGTAGCCCATGGGTCCGGGGCAACGGCAGCAACGACGGGCTTTTCCACGACGTACGGCGTATGGACGGGCACGGGCACCGGCTTCGGAATGGCAACCGGGACCGGCGCCGGGACAGGGGTAGCCCACGCTGCTTAATTACCCGGCACGGGAACGGGCATGTGGCACGGGCACCGGNGTACAGGACGATCGACTGGCACCGGGCTACGGNTACGAACCACCGGTACAGCCATACGGTACTCGCGCGATGGCCACCTGGGCTACGGACGATCGATCGGCACCTGGGCACGTGAACCTTCACTGGCACTGGAATACGGCTTCCTCG]

[+] EMBL AL930589             [GGCAAGAATTGCCCCGAGGTTTATTTTTAAAACTTTAAAGCGTAGATTAATAATTTATTCTGTATCAATTATCCTACCTATTACCTACTGCACGCATATCGTGCCGCGATCGTTTCAGGACAATCTTAATAGCATTTATATTTTGGTTGAGTAGCTTAAAAGTAATCGTTTACCTTAGCTTAATGCAAACAGCTTCTACGCATTTACCACAGCTTTGCGGTAGCCCATGGGTCCGGGGCAACGGCAGCAACGACGGGCTTTTCCACGACGTACGGCGTATGGACGGGCACGGGCACCGGCTTCGGAATGGCAACCGGGACCGGCGCCGGGACAGGGGTAGCCCACGCTGCTTAATTACCCGGCACGGGAACGGGCATGTGGCACGGGCACCGGNGTACAGGACGATCGACTGGCACCGGGCTACGGNTACGAACCACCGGTACAGCCATACGGTACTCGCGCGATGGCCACCTGGGCTACGGACGATCGATCGGCACCTGGGCACGTGAACCTTCACTGGCACTGGAATACGGCTTCCTCG]


>consensus_8082#3 GGCAAGAATTGCCCCGAGGTTTATTTTTAAAACTTTAAAGCGTAGATTAATAATTTATTC TGTATCAATTATCCTACCTATTACCTACTGCACGCATATCGTGCCGCGATCGTTTCAGGA CAATCTTAATAGCATTTATATTTTGGTTGAGTAGCTTAAAAGTAATCGTTTACCTTAGCT TAATGCAAACAGCTTCTACGCATTTACCACAGCTTTGCGGTAGCCCATGGGTCCGGGGCA ACGGCAGCAACGACGGGCTTTTCCACGACGTACGGCGTATGGACGGGCACGGGCACCGGC TTCGGAATGGCAACCGGGACCGGCGCCGGGACAGGGGTAGCCCACGCTGCTTAATTACCC GGCACGGGAACGGGCATGTGGCACGGGCACCGGNGTACAGGACGATCGACTGGCACCGGG CTACGGNTACGAACCACCGGTACAGCCATACGGTACTCGCGCGATGGCCACCTGGGCTAC GGACGATCGATCGGCACCTGGGCACGTGAACCTTCACTGGCACTGGAATACGGCTTCCTC G



consensusID : consensus_8082#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 469
fasta sequence
                              [ATCGCCACGAGGCGAG-TGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTTGGATCCCACGCGCACACGCACACCGTCGTAACGAAGAAGGTCGGCATTCCCATACCGGCCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCCAGTGCCAGTGAAGGTTCACGTGCCAG]

[+] EMBL AL934934             [ATCGCCACGAGGCGAG TGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTTGGATCCCACGCGCACACGCACACCGTCGTAACGAAGAAGGTCGGCATTCCCATACCGGCCCCGTACGCTGTGCCGGTCGAGAAGCCGTATCCAGTGCCAGTGAAGGTTCACGTGCCAG]
[+] EMBL AL933611             [          GGNGAGCTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTCGTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCA GGCGGTGGGAAGTTCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAGGAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCACGCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCCGTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTTGGATCCCACGCGCACACGCACACCGTCGTAACGAAGAAGGTCGG                                                                          ]


>consensus_8082#4 ATCGCCACGAGGCGAGTGCACAGCGTGATAGGAGCGAAAATGAAGCTTTTGGTACTGCTC GTCCTTCCATTAGCGTTGGTGTACGCGGGAACGGAAAAAGGCTCCAGGGCGGTGGGAAGT TCAAACACGAAGCAGCTAACACCGACGGACGAACAGTTCCAGCAGCTGGGCACCAAGAAG GAAAAGCGAGGCATCTTTGGTTTCGGTAGCTATGCGCCGGCCGCCCCCGTGTACGGTCAC GCCTTTGCCCATCACGTCCATCAGCATCTGCTGCCTGCCGCGGATCCATTTGCACCGGCC GTAGGACTGGCTGCCCCTGCTGCTGTGCCTGCCCTTGCCGGTCCGTACCTTGGATCCCAC GCGCACACGCACACCGTCGTAACGAAGAAGGTCGGCATTCCCATACCGGCCCCGTACGCT GTGCCGGTCGAGAAGCCGTATCCAGTGCCAGTGAAGGTTCACGTGCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8082#1      CATTAAAAGGTGTGCTGCGCGAGGGAAAGCTTATGAGCCGTGTCTCATTCGCCGAGGACT 60
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      ------------------------------------AGAATTGCCCAGGGTTTGAGGACT 24
consensus_8082#0      ------------------------------------------------------------
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      TCCAAGTTATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACA 120
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      TCAAGGTTATTAAGTGTTCCCGCGGTATAGAGTGACTCTACTGGGATAAAGCAGGAAACA 84
consensus_8082#0      ------------------------------------------------------------
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      TAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAAC 180
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      TAAGGGGAACCTTCCGAAGAACGAACAAGCGTAAACTGTGCCTTCCCTGTGGGATCGAAC 144
consensus_8082#0      ------------------------------------------AGGCACGAATCTCCCCGA 18
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      GAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTG 240
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      GAATTACTTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTG 204
consensus_8082#0      GGGTTAATTCAATTAGTGCGAAACGGTGAAGAGCAAGACTAGTTTTGCGTGATAACGGTG 78
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      GAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAA 300
consensus_8082#4      -------------------ATCGCCA-CGAGG-CGAGTGCACAGCGTGATAGGAGCGAAA 39
consensus_8082#2      GAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAA 264
consensus_8082#0      GAAAAGTGGTTGAAATTCGGTTGCGAGTGAGAACGAGTGCACAGCGTGATAGGAGCGAAA 138
consensus_8082#3      -------GGCAAGAATT--GCCCCGA---GGTTTATTTTTAAAACTTTAAAGCGTAGATT 48
                                             * *    *      *  * * * * * **    **  

consensus_8082#1      ATGAAGCTTTT-GGTACTGCTCGTCCTTCCATTAGCGTT-GGTGTA-CGCGGGAAC---- 353
consensus_8082#4      ATGAAGCTTTT-GGTACTGCTCGTCCTTCCATTAGCGTT-GGTGTA-CGCGGGAAC---- 92
consensus_8082#2      ATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGCGTT-GGTGTA-CGCGGGAAC---- 318
consensus_8082#0      ATGAAGCTTTTTGGTACTGCTCGTCCTTCCATTAGCGTTTGGTGTAGCGCGGTANCACAC 198
consensus_8082#3      AATAATTTATTCTGTATCAATTATCCTACC--TATTACCTACTGCA-CGCA-TATCGT-- 102
                      *  **  * **  ***    *  **** **  **        ** * ***   * *    

consensus_8082#1      --GGAAAAAGGCTCCAGGG-CGGTGGGAAGTTCAAAC--ACGAAGCAGC-TAACACCGAC 407
consensus_8082#4      --GGAAAAAGGCTCCAGGG-CGGTGGGAAGTTCAAAC--ACGAAGCAGC-TAACACCGAC 146
consensus_8082#2      --GGAAAAAGGCTCCAGGGGCGGTGGGAAGTTCAAAC--ACGAAGCAG--TAACACCGAC 372
consensus_8082#0      GGGAAAAATGGCTCCANTCGGCGTGTGAGGTAAGATTCAATGCCACAGA-GNGTCATGGT 257
consensus_8082#3      -GCCGCGATCGTTTCAGGA-CAATCTTAATAGCATTT--ATATTTTGGTTGAGTAGCTTA 158
                             *  * * **       *   *           *       *            

consensus_8082#1      GGACGAAC-AGTTCCAG-CAGCTGGGCACCAAGAAGGA---AAAGCGAGGCATCTTTGGT 462
consensus_8082#4      GGACGAAC-AGTTCCAG-CAGCTGGGCACCAAGAAGGA---AAAGCGAGGCATCTTTGGT 201
consensus_8082#2      GGACGAANCAGTTCCAG-CAGCTGGGCACCAAGAAGGA---AAAGCGAGGCATCTTTGGT 428
consensus_8082#0      AGACCGACCGTTAGCAGGCANCTGAGAGCAAAGTTGGCCCCAGNCCCATGTCCTAGTGTA 317
consensus_8082#3      AAAGTAATCGTTTACCT-TAGCTTAATGCAAACAGCTT---CTACGCATTTACCACAGCT 214
                        *   *    *  *    * **     * **               *         *  

consensus_8082#1      TT-CGGTAGCTAT----GCGCCGGCCGCCCCCGTGTA---CGGTCACGCCTTTGCCCATC 514
consensus_8082#4      TT-CGGTAGCTAT----GCGCCGGCCGCCCCCGTGTA---CGGTCACGCCTTTGCCCATC 253
consensus_8082#2      TT-CGGTAGCTAT----GCGCCGGC---GCCCGTGTA---CGGTCACGCCTTTGCCCATC 477
consensus_8082#0      CC-ACGCAAAGGTAGAAGCGACNGAGAGGGCCGGAGGGGCCAATCGTTCCGAGGTGTATC 376
consensus_8082#3      TTGCGGTAGCCCATGGGTCCGGGGCAACGGCAGCAACGACGGGCTTTTCCACGACGTACG 274
                           * *          *    *      * *               **       *  

consensus_8082#1      ACGT--CCATCAGCATCTGCTGCCTGCCGCGGAT-----CCATTTGCACCGGCCGTAGGA 567
consensus_8082#4      ACGT--CCATCAGCATCTGCTGCCTGCCGCGGAT-----CCATTTGCACCGGCCGTAGGA 306
consensus_8082#2      ACGT--C-ATCAGCATCTGCTGC-TGCCGCGGATT----CCATTTGCACCGGC-GTAGGA 528
consensus_8082#0      CNGTGGTAGACCTTATCGGCAGCCCGGGACGAGCGCTCACGATTGGTAACCGGGGTCCGA 436
consensus_8082#3      GCGTA-TGGACGGGCACGGGCACCGGCTTCGGAAT--GGCAACCGGGACCGGCGCCGGGA 331
                        **      *     * *   *  *   **        * *   * * * *      **

consensus_8082#1      CTGGCTGCCCCTGCTGCTGTGCCT-GCCCTTGCCGGTCCGTAC-CTTGGATCCC-----A 620
consensus_8082#4      CTGGCTGCCCCTGCTGCTGTGCCT-GCCCTTGCCGGTCCGTAC-CTTGGATCCC-----A 359
consensus_8082#2      CTGGCTGGCCCTGCTGCTGTGCCT-GCC-TTGCCGGTCCGTAC-CTTGGATCC------A 579
consensus_8082#0      CAGCCGCTTTCTGNGCCCGAATCNAGCGGTTCCCAATTCCAATGCGCCAATCCNTCGGCA 496
consensus_8082#3      CAGGGGTAGCCCACGC---TGCTTAAT--TACCCGGCACGGGAACGGGCATGTG---GCA 383
                      * *       *                  *  **    *     *    **        *

consensus_8082#1      CGCGCACACGCACACCGTCGTAA-----CGAAGAAGGTCGGC--ATTCCCATA--CCGGC 671
consensus_8082#4      CGCGCACACGCACACCGTCGTAA-----CGAAGAAGGTCGGC--ATTCCCATA--CCGGC 410
consensus_8082#2      CGCGCACACGCACAC-GTCGTAA-----CGAAGAAGGTCGG---ATTCCCATA--CCGGC 628
consensus_8082#0      TGGGCCCTTGCCCCAGGGCGTGAACTTACGCGAAAGTTTAGTTGACGCCNGTGGCCCGGN 556
consensus_8082#3      CGGGCACCGGNGTACAGG-ACGATCGACTGGCACCGGGCTACGGNTACGAACCACCGGTA 442
                       * ** *  *      *     *      *     *           *       * *  

consensus_8082#1      C--CCGTA-CGCTGTGCC--GGTCGAGAAGCCGTATCCAGTGCCAGTGAA-GGTTCACGT 725
consensus_8082#4      C--CCGTA-CGCTGTGCC--GGTCGAGAAGCCGTATCCAGTGCCAGTGAA-GGTTCACGT 464
consensus_8082#2      C--C-GTA-CGCTGTGCC--GGTCGAGAAGCCGTATC-AGTGCCAGTGAA-GGTTCACGT 680
consensus_8082#0      CACCCGCAGCTTTGTGCTTTGGTCCACACCTTAGGNCTTTGGACTTNGGT-TATGCCCAC 615
consensus_8082#3      CAGCCATA-CGGTACTCGCGCGATGGCCACCTGGGCTACGGACGATCGATCGGCACCTGG 501
                      *  *   * *  *   *    *                         *       *    

consensus_8082#1      GCCAGTGCCGATCGATCGTCCGTACC-CAGTGGCCATCCCGA---GACCGTAT-GCTGTA 780
consensus_8082#4      GCCAG------------------------------------------------------- 469
consensus_8082#2      GCCAGTGCCGATCGATCGTCCGTACC-CAGTGGC-ATCCCGA---GACCGTATTGCTGTA 735
consensus_8082#0      TTTGGTGCGCCCTTTTTGGCCCCATGGTGGTTTCCNNCCTGGTTTAACCCTCTCGTTCTT 675
consensus_8082#3      GCACGTGAACCTTCACTGGCACTGGAATA-CGGCTTCCTCG------------------- 541
                          *                                                       

consensus_8082#1      CCGGTGGAAAAACCCTACCCGGTGCCAGTCGATCGTCCGTACCCGGTGGCCGTGCCACAT 840
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      CCGGTGGAAAAACCT--ACCGGTGCCAGTCGATCGTCCGTACCGG--TGGCGTGCCACAT 791
consensus_8082#0      CGGGGGGAGAAGTACCCCTCTCCCAAAGCAGAGAGTCCCTAGGCCAAACCAANGACGGGC 735
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      CCCGTTCCCGTGCCGGTAATTAAGCACGTGGGCTACCCTGTCCCGGCGCCGGTCCCGGTT 900
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      NCCGTTCCGTG--CGGTAATTAA------------------------------------- 812
consensus_8082#0      CAAGTCAGAAACCCGGAGGTCCTGGGGTTAAAAACCCCGGCAACACCATNGGTAACGACT 795
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      GCCATTCCGAAGCCGGTGCCCGTGCCCGTCCATACGCCGTACGTCGTGGAAAAGCCCGTC 960
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      GGTGGTTCCGAGGTGGCCACTTTTTGCCGCCCCCCAAATTAAAAGCCCCCAGGGTGTGCG 855
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      GTTGCTGCCGTTGCCCCGGACCCATGGGCTACCGCAAAGCTGTGGTAAATGCGTAGAACT 1020
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      CCCACCTCCAGGATCAATACTTTGCCCTTTGGTTAGGCCCCCCCCANGGGGGGTTTTACC 915
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      GTTTGCATT--------------------------------------------------- 1029
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      CTGGAAAGGGAGAATGAAGGCGCACCCACATGGGTNGTGAANTTTNCCACCCCAGAGATG 975
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      ------------------------------------------------------------
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      TTGTGGGGNCCCAAAATAGGTTATAGGGCAAAAGACNGGCTTGTGTTTGTTCCCCANAAC 1035
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      ------------------------------------------------------------
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      ACTCTGGGAGTTTCGGGGACCGACCCTAAATAGGGGTTTAGGGGGCCTCNGGGAAAATTT 1095
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      ------------------------------------------------------------
consensus_8082#4      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      TNCCCTGAGGAAAAGTTGACCCCAGGGTTTTTATCCACCCAGGGTTTAAAGACCCCACCC 1155
consensus_8082#3      ------------------------------------------------------------
                                                                                  

consensus_8082#1      -------------------------------------------------
consensus_8082#4      -------------------------------------------------
consensus_8082#2      -------------------------------------------------
consensus_8082#0      CACCTAAAANGGGTTTTAGTGTGCCCCCCAAGATTACACNCACCTACCC 1204
consensus_8082#3      -------------------------------------------------
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)