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Anopheles gambiae
cluster # 811 cluster # 811       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_811#0 length = 698 sequences # 1  
consensus_811#1 length = 535 sequences # 1  

consensusID : consensus_811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence
                              [CCGGGGGTGGAAAAAGTGGAACCTGCAGCATTGCGAATTGTTTCCTCATCGATAATGGCCCAGCTGGTTTAGTGTGTGTGCGTGTGTGTTTTGCAACAAACAGGGACAGTCGTACGGGAAAGTTTTTTTTGCTTCCAACTGGGTGAAGTCACTGGAAGGACGGACTACGACGACAATTCCCTCTTTCACTCTATTGTTTTGTCGTTTACCAGTGTGTGCGTGTGTGTGTGTTGGAGCCGTAACCCTCCGTTGCGTATTTCACATCGGGGTGGTACCATTGTGGGTGCGTGTGTGTGTATTCAGCTGTGAAACATAGCACCCCAGCCGCATACGACGTAACTTTACAACGGTTCCCCCTTACCCCTCTGTGGCCCCGTGCATTGTGGAAGGGGGTGCAAGAAGTATGTGATTGTTATTGTTCCCCCTGGCTGGCAGAGGTTTTCAGTAGCTGACGAAGCAGCGGAAATTGGAGTGGCGAAACCAACACGGCGCTGTCTCAATAGTGTGCGGCTATCTCATCGATCGATTTCGTCCGGGAAGAGAGAGAGTTCTATCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGGTTACGTTTGAGCAAATCATACTGGGATGCGAAGCGCATCGCCAACCGGCTAAAGGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGT]

[+] EMBL BM647421             [CCGGGGGTGGAAAAAGTGGAACCTGCAGCATTGCGAATTGTTTCCTCATCGATAATGGCCCAGCTGGTTTAGTGTGTGTGCGTGTGTGTTTTGCAACAAACAGGGACAGTCGTACGGGAAAGTTTTTTTTGCTTCCAACTGGGTGAAGTCACTGGAAGGACGGACTACGACGACAATTCCCTCTTTCACTCTATTGTTTTGTCGTTTACCAGTGTGTGCGTGTGTGTGTGTTGGAGCCGTAACCCTCCGTTGCGTATTTCACATCGGGGTGGTACCATTGTGGGTGCGTGTGTGTGTATTCAGCTGTGAAACATAGCACCCCAGCCGCATACGACGTAACTTTACAACGGTTCCCCCTTACCCCTCTGTGGCCCCGTGCATTGTGGAAGGGGGTGCAAGAAGTATGTGATTGTTATTGTTCCCCCTGGCTGGCAGAGGTTTTCAGTAGCTGACGAAGCAGCGGAAATTGGAGTGGCGAAACCAACACGGCGCTGTCTCAATAGTGTGCGGCTATCTCATCGATCGATTTCGTCCGGGAAGAGAGAGAGTTCTATCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGGTTACGTTTGAGCAAATCATACTGGGATGCGAAGCGCATCGCCAACCGGCTAAAGGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGT]


>consensus_811#0 CCGGGGGTGGAAAAAGTGGAACCTGCAGCATTGCGAATTGTTTCCTCATCGATAATGGCC CAGCTGGTTTAGTGTGTGTGCGTGTGTGTTTTGCAACAAACAGGGACAGTCGTACGGGAA AGTTTTTTTTGCTTCCAACTGGGTGAAGTCACTGGAAGGACGGACTACGACGACAATTCC CTCTTTCACTCTATTGTTTTGTCGTTTACCAGTGTGTGCGTGTGTGTGTGTTGGAGCCGT AACCCTCCGTTGCGTATTTCACATCGGGGTGGTACCATTGTGGGTGCGTGTGTGTGTATT CAGCTGTGAAACATAGCACCCCAGCCGCATACGACGTAACTTTACAACGGTTCCCCCTTA CCCCTCTGTGGCCCCGTGCATTGTGGAAGGGGGTGCAAGAAGTATGTGATTGTTATTGTT CCCCCTGGCTGGCAGAGGTTTTCAGTAGCTGACGAAGCAGCGGAAATTGGAGTGGCGAAA CCAACACGGCGCTGTCTCAATAGTGTGCGGCTATCTCATCGATCGATTTCGTCCGGGAAG AGAGAGAGTTCTATCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGA TGTCGGTTACGTTTGAGCAAATCATACTGGGATGCGAAGCGCATCGCCAACCGGCTAAAG GGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGT



consensusID : consensus_811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence
                              [GAATCGCCCGAGGTNTCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGCGTTACGTTTGAGCAAATCATACTGGATGCGAAGCGCATCGCCAACCGGCTAAAGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGTCGGAATCGGTCAACAAGCACATCGAGTCGATGCGCCAGTTCCAGGACGATATCGACATACTGAACAAGCTGGCGCGCGACCGCTCCAACAACCAGCTGATCACGATCATCCACCAGGAAAATCCGCAGATCCGCGAGATCCAGCAGGAGAATCGGCTGCTGAAGGCGGCCCTCGAGGACCACCAGCACGCGCTCGAGCACATCATGTCGAAGTACCGCGAGCACACGCAGGCCAAGATACTCAACACGAAGGTCAACTTTGTGGAGGCGTTCACGCGCCACCACCGGTCGGCCGACATCGAGCGGCGCGACGAGCTGATCCGGCAGCAGACGGCCAAAATACAGGAGATGGCCGCGTCATGCAGCGCGTCTCGCAG]

[+] EMBL AL932661             [GAATCGCCCGAGGTNTCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTACGATGTCGCGTTACGTTTGAGCAAATCATACTGGATGCGAAGCGCATCGCCAACCGGCTAAAGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGTCGGAATCGGTCAACAAGCACATCGAGTCGATGCGCCAGTTCCAGGACGATATCGACATACTGAACAAGCTGGCGCGCGACCGCTCCAACAACCAGCTGATCACGATCATCCACCAGGAAAATCCGCAGATCCGCGAGATCCAGCAGGAGAATCGGCTGCTGAAGGCGGCCCTCGAGGACCACCAGCACGCGCTCGAGCACATCATGTCGAAGTACCGCGAGCACACGCAGGCCAAGATACTCAACACGAAGGTCAACTTTGTGGAGGCGTTCACGCGCCACCACCGGTCGGCCGACATCGAGCGGCGCGACGAGCTGATCCGGCAGCAGACGGCCAAAATACAGGAGATGGCCGCGTCATGCAGCGCGTCTCGCAG]


>consensus_811#1 GAATCGCCCGAGGTNTCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACGCTAC GATGTCGCGTTACGTTTGAGCAAATCATACTGGATGCGAAGCGCATCGCCAACCGGCTAA AGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGTCGGAATCGGTCAACAAGCACA TCGAGTCGATGCGCCAGTTCCAGGACGATATCGACATACTGAACAAGCTGGCGCGCGACC GCTCCAACAACCAGCTGATCACGATCATCCACCAGGAAAATCCGCAGATCCGCGAGATCC AGCAGGAGAATCGGCTGCTGAAGGCGGCCCTCGAGGACCACCAGCACGCGCTCGAGCACA TCATGTCGAAGTACCGCGAGCACACGCAGGCCAAGATACTCAACACGAAGGTCAACTTTG TGGAGGCGTTCACGCGCCACCACCGGTCGGCCGACATCGAGCGGCGCGACGAGCTGATCC GGCAGCAGACGGCCAAAATACAGGAGATGGCCGCGTCATGCAGCGCGTCTCGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_811#0      CCGGGGGTGGAAAAAGTGGAACCTGCAGCATTGCGAATTGTTTCCTCATCGATAATGGCC 60
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      CAGCTGGTTTAGTGTGTGTGCGTGTGTGTTTTGCAACAAACAGGGACAGTCGTACGGGAA 120
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      AGTTTTTTTTGCTTCCAACTGGGTGAAGT-CACTGGAAGG-ACGGACTA--CGACGACAA 176
consensus_811#1      ----------GAATCGCCCGAGGTNTCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAA 50
                               *  **   *  ***   *  **** ***** *    ***  *** ** **

consensus_811#0      TTCCCTCTTTCACTCTATTGTTTTGTCGTTTACCAGTGTGTGCGTGTGTGTGTGTTGGAG 236
consensus_811#1      CACACGCT---ACGATGTCGCGTTACGTTTGAGCAAATCATAC-TGGATGCGAAGCGCAT 106
                       * * **   **  * * *  **    ** * **     * * **  ** *    * * 

consensus_811#0      CCGTAACCCTCCGTTGCGTATTTCACATCGGGGTGGTACCATTGTGGGTGCGTGTGTGTG 296
consensus_811#1      CGCCAACCGGCTAAAGGATCGGGAAGCGCTCGGCGATGC----GCTGCTGCTCGAGT-CG 161
                     *   ****  *    *  *     *   *  ** * * *    *  * ***  * **  *

consensus_811#0      TATTCAGCTGTGAAACATAGCACCCCAGCCGCATACGACGTAACTTTACAACGGTTCCCC 356
consensus_811#1      GAATCGGTCAACAAGCACATCG----AGTCG-ATGCGCC--AGTTCCAGGACGATATCGA 214
                      * ** *     ** ** * *     ** ** ** ** *  *  *  *  *** *  *  

consensus_811#0      CTTACCCCTCTGTGGCCCCGTGCATTGTGGAAGGGGGTGCAAGAAGTATGTGATTGTTAT 416
consensus_811#1      CATAC---TGAACAAGCTGGCGCGCGACCG------CTCCAACAACCAGCTGATCACGAT 265
                     * ***   *       *  * **      *       * *** **  *  ****    **

consensus_811#0      TGTTCCCCCTGGCTGGCAG-AGGTTTTCAGTAGCTGAC-GAAGCAGCGGAAATTGGAGTG 474
consensus_811#1      CATCCACCAGGAAAATCCGCAGATCCGCGAGATCCAGCAGGAGAATCGGCTGCTGAA--G 323
                       * * **  *     * * ** *   *   * *   * * ** * ***    ** *  *

consensus_811#0      GCGAAACCAACACGGCGCTGTCTCAATAGTGTGCGGCTATCTCATCGATCGATTTCGTCC 534
consensus_811#1      GCGGCCCTCGAGGACCACCAGCAC----GCGCTCGAGCACATCAT--GTCGAAGTACCGC 377
                     ***   *        * *   * *    * *  **   *  ****   ****  *    *

consensus_811#0      GGGAAGAGAGAGAGTTCTATCGCGCACTTGAAGGTAAAAGCTATCCGAAGAAAACACACG 594
consensus_811#1      GAGCACACGCAGGCCAAGATACTCAACACGAAGGTCAACTTTGTG-GAGGCGTTCACGCG 436
                     * * * *   **      **     **  ****** **   * *  ** *    *** **

consensus_811#0      CTACGAT--GTCGGTTACGTTTGAGCAAATCATACTGGGATGCGAAGCGCATCGCCAACC 652
consensus_811#1      CCACCACCGGTCGGCCGACATCGAGCGG--CGCGACGAGCTG----ATCCGGCAGCAGAC 490
                     * ** *   *****      * ****    *     * * **       *  *  **  *

consensus_811#0      GGCTAAAGGGATCGGGAAGCGCTCGGCGATGCGCTGCTGCTCGAGT 698
consensus_811#1      GGCCAAAAT-ACAGGAGATGGCCGCGTCATGCAGCGCGTCTCGCAG 535
                     *** ***   *  **  *  **   *  ****   **  ****   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)