These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 780 fasta sequence [GTCCGAGGAGCTAGCTAGGCGCCACAAAAATTTAATCGGAAATTGTAACAAGAAAAAAAGTAAACTTTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG-AAACAAAGGGCGGTTGCGAATAGTTAGAA-TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT-AATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAA-GGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATACCTTTACACATATCAC] [+] EMBL BX603329 [GTCCGAGGAGCTAGCTAGGCGCCACAAAAATTTAATCGGAAATTGTAACAAGAAAAAAAGTAAACTTTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAA ] [+] EMBL BX601655 [ AAAAAGTAAACTTTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT A ] [+] EMBL BX626268 [ TTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCANCGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT AATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAA GGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATACCTTTACACATATCAC] [+] EMBL BX623869 [ ACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGA ] [+] EMBL BX616576 [ CAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGG ] [+] EMBL BX628776 [ AAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT AATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAA GGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGA ] [+] EMBL AL929649 [ GGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAGCAAACAAAGGGCGGTTGCGAATAGTTAGAACTAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTTAAATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAACGGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAA ] [+] EMBL BM655652 [ TGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCTAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATACCTTTACACA ] consensusID : consensus_8127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCCCACCCAGATGCGNNNNCTTANCTCGAGGCAGAATTGTCCCGACGGTGTACAGATAGTGTAACTTCATTCTAGTGGCCGTGCTGGAAAGTCCTAAAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCAAAACAGACAAGCAGAGAAACCATTTTCAGAAACANCAGGGCGGCTTGCGAACTAGTTACGCCATAACTTACGCGTACGTTAGTTGGGCAACATCGCGGACTGNTGGCGAACGCGAGACGTNCTGTCTTCTATAACTCCGCACGGTCTTTATAAGAGGTTCGTNCGCACTGGCTTACCTACGCTCATGNAANCAGGTTATCGCCTGCCGTGCTAACATTTTAACGGGCTGTTNGCCGCTGCNGTACATCGTGNTAACTTTNTTNAAACTTGCCTTGGNGGACTNCTCGGGTTTACCCCATGACCTTGGTCGCTTGGGCCACAAAAGTTTTCCCGGAAGGACTAAAATCCCCCGGGCCAAANGGTCGGGNGCACCACCNGCTTAAANACTTGGGGGATNCCCAGGCTGGCACAACACGGGGACAAAGGCCCGGTTTTACTTTACACCGCCTTTTTGTTAAAAGCCCAACCATTTANTTCTCNCAANGCACCCTTTTTTATGGGAGCCACCCCTCCGGGCGACCAAAGTTTACCAACCAACATTCTACNCCAACG] [+] EMBL AL696616 [CCCCACCCAGATGCGNNNNCTTANCTCGAGGCAGAATTGTCCCGACGGTGTACAGATAGTGTAACTTCATTCTAGTGGCCGTGCTGGAAAGTCCTAAAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCAAAACAGACAAGCAGAGAAACCATTTTCAGAAACANCAGGGCGGCTTGCGAACTAGTTACGCCATAACTTACGCGTACGTTAGTTGGGCAACATCGCGGACTGNTGGCGAACGCGAGACGTNCTGTCTTCTATAACTCCGCACGGTCTTTATAAGAGGTTCGTNCGCACTGGCTTACCTACGCTCATGNAANCAGGTTATCGCCTGCCGTGCTAACATTTTAACGGGCTGTTNGCCGCTGCNGTACATCGTGNTAACTTTNTTNAAACTTGCCTTGGNGGACTNCTCGGGTTTACCCCATGACCTTGGTCGCTTGGGCCACAAAAGTTTTCCCGGAAGGACTAAAATCCCCCGGGCCAAANGGTCGGGNGCACCACCNGCTTAAANACTTGGGGGATNCCCAGGCTGGCACAACACGGGGACAAAGGCCCGGTTTTACTTTACACCGCCTTTTTGTTAAAAGCCCAACCATTTANTTCTCNCAANGCACCCTTTTTTATGGGAGCCACCCCTCCGGGCGACCAAAGTTTACCAACCAACATTCTACNCCAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8127#0 -----GTCCGAGGAGCTAGCTAGGCGCCACAAAAATTTAATCGGAAATTGTAACAAGAAA 55 consensus_8127#1 CCCCACCCAGATGCGNNNNCTTANCTCGAGGCAGAATTGTCCCGACGGTGTACAGATAGT 60 * ** * * ** * * * * * ** * ** **** * * consensus_8127#0 AAAAGTAAACTTT--TAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCA 113 consensus_8127#1 GTAACTTCATTCTAGTGGCCGTGCTGGAAAGTCCTAAAGGCGTGCGCGCGAAAGTTGTAC 120 ** * * * * * * * * * * ** * * *** * consensus_8127#0 ACGAAGCAAG-CAGAAGCA-AACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAA 171 consensus_8127#1 ATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCAAAACAGACAAGCAGAGAAACCA 180 * *** * * * * ** ** ** * * * * * * * * * * * * consensus_8127#0 ATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTT 231 consensus_8127#1 TTTTCAG---AAACANCAGGGCGGCTTGCGAACTAGT-TACGCCATAACTTACGCGTACG 236 * * **** ** * * *** * * ** * ** * * ** consensus_8127#0 TTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCA---ATGGAT 288 consensus_8127#1 TTAGTTGGGCAA--CATCGCGGACTGNTGGCGAACGCGAGACGTNCTGTCTTCTATAACT 294 **** **** * * * ** * ** ** * * ** * consensus_8127#0 TAGTGCTTTCGGGA-GGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTT 347 consensus_8127#1 CCGCACGGTCTTTATAAGAGGTTCGTNCGCACTGGC---TTACCTACGCTCATGNA---- 347 * * ** * ** * ** ** *** * * ***** *** * * consensus_8127#0 ACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCG 407 consensus_8127#1 ANCAGGTTATCGCCTGCCGTGCTAACATTTTAACGGGCTGTTNGCCGCTGCNGTACATCG 407 * ** * ** * * * *** ** * * * * ** consensus_8127#0 TGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATA 467 consensus_8127#1 TGNT--AACTTTNTTNAAACTTGCCTTGGNGGACTNCTCGG-GTTTACCCCATGACC-TT 463 ** * ** * * * * *** * * * * * ** * * consensus_8127#0 AGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAGAAACAAAGGG-CG 526 consensus_8127#1 GGTCGCTTGGGCCACAAAAGTTTTCCCGGAAGGACTAAAATCCCCCGGGCCAAANGGTCG 523 * * ** ** ** * * ** * ** * * **** ** ** consensus_8127#0 GTTGCG--AATAGTTAGAATAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGA 584 consensus_8127#1 GGNGCACCACCNGCTTAAANACTTGGGGGATNCCCAGGCTGGCA--CAACACGGGGACAA 581 * ** * * * ** * ** * * ** ** * * * * * * * consensus_8127#0 ACGCGAGACGTTCTGTTTTTAATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATG 644 consensus_8127#1 AGGCCCG--GTTTTACTTTACACCGCCTTTT------TGTTAAAAGC-CCAACCATTTAN 632 * ** * *** * *** * ** * ** **** * * * consensus_8127#0 TTGCTGCGGTACATTAAGGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTC 704 consensus_8127#1 TTCTCNCAANGCACCCTTTTTTATGGGAGCCACCCCTCCGGGCGACCAAAGTTTACCAAC 692 ** * ** * * * * * * * *** * consensus_8127#0 CCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATA 764 consensus_8127#1 CAACATTCTACNCCAACG------------------------------------------ 710 * * ** * ** consensus_8127#0 CCTTTACACATATCAC 780 consensus_8127#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||