Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8151 cluster # 8151       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8151#0 length = 1543 sequences # 5  
consensus_8151#1 length = 775 sequences # 1  
consensus_8151#2 length = 713 sequences # 1  
consensus_8151#3 length = 623 sequences # 1  
consensus_8151#4 length = 548 sequences # 1  

consensusID : consensus_8151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1543
fasta sequence
                              [CCGGCGAAAGCGAAAGAGAACGTTTCCAATCTTCCAGTCGTTTTGTATTTTGTGCCCTGCGAAAAAAAAATTCCCCCGCACTCTCTACCATTTTTGTATTTAAAAAAAAGCCCCGATTTTTGCGGTAACAACACATTAATCGATAGTAACATACAAGCCGCAACGAATTGTTAGCGGTTGCGATAGTTGACGGAGCTGTGCAGTGCTAGTTGTAATGAATATGCTAAGAGATTTTTGCACGCGAGATGAACGTAAAATGCTTACATTAATCGCTTTTTAATCTGCAACTTTTGCATTGATCGCTTAACGCCGCCACCACCACTACGCGTACTGGCCGTGTTTGTTCTGGCGCATTGATTTCGCGTATATTTGAAATCTGTTTTACAAAACAACATCACTTTTATGTAAATATCTATATCTTGCAGTAAAAAGAACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGAGATCAGGTTTGCTTGATATGTGTTACGCGA-GGCGCAAATGAACGCAAGTAGGTCTGT-TTGTGGCCGTTTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGA-TTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGATCTTACTTCAGACGGAACAAGAGGATTGAATACAGTGACTGAAACAAACAAACAAAAAAACTGG-AAGGAA-AAGGATGCAATGAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACTGAACCACACAGGAATCG-GAA-AGGAAATGATA-GT-TA-TGCATGTTTA-GATACATTAATCGAGAGCAAAACTCCGCGTACGATATTAATATAATATGCACGTTTATATCTG-CAACTGTAATT--GCCGCCACTTAGCAGCGTAATCATCACACTACATCACTAAGCCGCATCAGCAACTGTCTGTATACAATACAAATGTCGGTGTGTGTGTGTGTGTGTGTGTTTAACGGCATTACGTTGCTTTCTAACAAACTAAACTCACCTTTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGAT-A-CCGCGATATAGTGAAATGAGAATAGAGCGTGATGAGAATGATTCAGATAGCAAGGGGATGCAAA--ACAGCATGATAAGGATGTGTTATGAGCGTAGTAAAAACCGATGGAGAGCTCGTNTTAAGCTCTCCATGTTTGTGTGAAATAGTAGTAAAATTTGGAC-AAAAAANGATGATNGATTATATTGTAAAATGAAACAAAACNGATNGTGCGCGCGTGCATTGTGTAAATGAGTGAGCTGAAGAGTGTTAAAATGCAATTTGAAATGCAACACAAAAAAGAGTGAAGGGATAAAGTAAACGGCTGCATACCACCATCCCGTGTGTGGTGTAAGCGTTTGTGAAAATGTTAAACGCG]

[+] EMBL BM575737             [CCGGCGAAAGCGAAAGAGAACGTTTCCAATCTTCCAGTCGTTTTGTATTTTGTGCCCTGCGAAAAAAAAATTCCCCCGCACTCTCTACCATTTTTGTATTTAAAAAAAAGCCCCGATTTTTGCGGTAACAACACATTAATCGATAGTAACATACAAGCCGCAACGAATTGTTAGCGGTTGCGATAGTTGACGGAGCTGTGCAGTGCTAGTTGTAATGAATATGCTAAGAGATTTTTGCACGCGAGATGAACGTAAAATGCTTACATTAATCGCTTTTTAATCTGCAACTTTTGCATTGATCGCTTAACGCCGCCACCACCACTACGCGTACTGGCCGTGTTTGTTCTGGCGCATTGATTTCGCGTATATTTGAAATCTGTTTTACAAAACAACATCACTTTTATGTAAATATCTATATCTTGCAGTAAAAAGAACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGAGATCAGGTTTGCTTGATATGTGTTACGCGA GGCGCAAATGAACGCAAGCAGGTCTGT TTGTGGCCG TTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAAGCTTGGGTGA TTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX625982             [                                                                                                                                                                                                                                                                                                                                                                                                 AACACAACATCACTTTTATGTAAATATCTATATCTTGTAGTAAAAAGAACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGAGATCAGGTTTGCTTGATATGTGTTACGCGA GGCGCAAATGAACGCAAGTAGGTCTGT TTGTGGCCGTTTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGA TTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGATCTTACTTCAGACGGAACAAGAGGATTGAATACAGTGACTGAAACAAACAAACAAAAAAACTGG AAGGAA AAGGATGCAATGAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACTGAACCACACAGGAATCG GAA AGGAAATGATA GT TA TGCATGTTTA GATACATTAATCGAGAGCAAAACTCCGCGTACGATATTAATATAATATGCACGTTTATATCTG CAACTGTAATT  GCCGCCACTTAGCAGCGTAATCATCACACTACATCACTAAGCCGCATCAGCAACTGTCTGTATACAATACAAATGTCGGTGTGTGTGTGTGTGTGTGTGTTTAACGGCATTACGTTGCTTTCTAACAAACTAAACTCACCTTTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGAT A CCGCGATATAGTGAAATGAGAATAGAGCGTGATGAGAATGA                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AL695048             [                                                                                                                                                                                                                                                                                                                                                                                                                                           naggttACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGAGATCAGGTTTGCTTGATATGTGTTACGCGATGGCGCAAATGAACGCAAGTAGGTCTGTATTGTGGCCGTTTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGATCTTACTTCAGACGGAACAAGAGGATTGAATACAGTGACTGAAACAAACAAACAAAAAAACTGGCAAGGAACAAGGATGCAATGAACTGATATTAAAACGACGAGACCNGCACAAGGTGAACTGAACCACACAGGAATCGCGAACAGGAANTGATACGTCTACTGCATGTNTACGATACATTAATCGAGAGCAAAACTCCGCGTACGATATTAATNTAATATGCACCGTTATATCTGTCAACTGTAATT  GCCG CACTTAGCAGCGTAATCATCACNCTACATCACTAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX624258             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   acgaggTG CAACTGTAATTTAGCCGCCACTTAGCAGCGTAACCATCACACTACATCACTAAGCCGCATCAGCAACTGTCTGTATACAATACAAATGTCGGTGTGTGTGT T TGTGTGTGTTTAACGGCATTACGTTGCTTTCTAACAAACTAAACTCACCTTTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGAAACGATAA CCGCGATATAGTGAAATGAGAATAGAGCGTGATGAGAATGATTCAGATAGCAAGGGGATGCAAA  ACAGCATGATAAGGATGTGTTATGAGCGTAGTAAAAACCGATGGAGAGCTCGTNTTAAGCTCTCCATGTTTGTGTGAAATAGTAGTAAAATTTGGACAAAAAAANGATGATNGATTATATTGTAAAATGAAACAAAACNGATNGTGCGCGCGTGCATTGTGTAAATGAGTGAGCTGAAGAGT                                                                                                              ]
[+] EMBL BX615934             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGAT ACCCGCGATATAGTGAAATGAGAATAGAGCGTGATGAGAATGATTCGGATAGGAGGCGTATGCAAAGTGCAGCATGATAAGGATGTGTTATGAGCGTAGTAAAAACCGATGGAGAGCTCGTTTTAAGCTCTCCATGTTTGTGTGAAATAGTAGTAAAATTTGGAC AAAAAAGGATGATTGATTATATTGTAAAATGAAACAAAACGGATTGTGCGCGCGTGCATTGTGTAAATGAGTGAGCTTAAGAGTGTTAAAATGCAATTTGAAATGCAACACAAAAAAGAGTGAAGGGATAAAGTAAACGGCTGCATACCACCATCCCGTGTGTGGTGTAAGCGTTTGTGAAAATGTTAAACGCG]


>consensus_8151#0 CCGGCGAAAGCGAAAGAGAACGTTTCCAATCTTCCAGTCGTTTTGTATTTTGTGCCCTGC GAAAAAAAAATTCCCCCGCACTCTCTACCATTTTTGTATTTAAAAAAAAGCCCCGATTTT TGCGGTAACAACACATTAATCGATAGTAACATACAAGCCGCAACGAATTGTTAGCGGTTG CGATAGTTGACGGAGCTGTGCAGTGCTAGTTGTAATGAATATGCTAAGAGATTTTTGCAC GCGAGATGAACGTAAAATGCTTACATTAATCGCTTTTTAATCTGCAACTTTTGCATTGAT CGCTTAACGCCGCCACCACCACTACGCGTACTGGCCGTGTTTGTTCTGGCGCATTGATTT CGCGTATATTTGAAATCTGTTTTACAAAACAACATCACTTTTATGTAAATATCTATATCT TGCAGTAAAAAGAACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGAG ATCAGGTTTGCTTGATATGTGTTACGCGAGGCGCAAATGAACGCAAGTAGGTCTGTTTGT GGCCGTTTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAGATAT ACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTGCTAGTACAATGTAAGGCTCGTCG AGACTAAAACACACGAACACTTACCACACTTAGCTTCGATCTTACTTCAGACGGAACAAG AGGATTGAATACAGTGACTGAAACAAACAAACAAAAAAACTGGAAGGAAAAGGATGCAAT GAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACTGAACCACACAGGAATCGGAA AGGAAATGATAGTTATGCATGTTTAGATACATTAATCGAGAGCAAAACTCCGCGTACGAT ATTAATATAATATGCACGTTTATATCTGCAACTGTAATTGCCGCCACTTAGCAGCGTAAT CATCACACTACATCACTAAGCCGCATCAGCAACTGTCTGTATACAATACAAATGTCGGTG TGTGTGTGTGTGTGTGTGTTTAACGGCATTACGTTGCTTTCTAACAAACTAAACTCACCT TTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGATGGTGGTGAGGAGCCACTTTA CCGCTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGATACCGCGATATAGT GAAATGAGAATAGAGCGTGATGAGAATGATTCAGATAGCAAGGGGATGCAAAACAGCATG ATAAGGATGTGTTATGAGCGTAGTAAAAACCGATGGAGAGCTCGTNTTAAGCTCTCCATG TTTGTGTGAAATAGTAGTAAAATTTGGACAAAAAANGATGATNGATTATATTGTAAAATG AAACAAAACNGATNGTGCGCGCGTGCATTGTGTAAATGAGTGAGCTGAAGAGTGTTAAAA TGCAATTTGAAATGCAACACAAAAAAGAGTGAAGGGATAAAGTAAACGGCTGCATACCAC CATCCCGTGTGTGGTGTAAGCGTTTGTGAAAATGTTAAACGCG



consensusID : consensus_8151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 775
fasta sequence
                              [CAGAATCCGCACGAGGTATCACACTACATCACTAAGCCGCNTCAGCAACTGGTCTGTATACAATACAAATGTCGGTGTGTGTGTGTGTGTGTGTGTTTAACGGCGATTACGTTGCTTTCTAACAAACTAAACTCACCTTTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCGTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGATACCCGCGGATATAGTGCAAATGCGAATAGAGCGTGATGAGAATGATTCAGGATAGGAGGCGGATGCAAAAGGTGCAGGCAAGACTAAGGGATGGTTGGTTTATGGAAGCCGGTAAGTAAAAAAAGCCGAATTGGAGNAGGCCTTCGGGTTTTNAAAGGCTNTCTTGCCAATGGTTTTGGGTTGTGGAACAACTCTACGTAGTAAAACACTTTTGGGGGACCCACAGAAAGCAAGGGGCATTGAACTTTTGGCACNTCAANCATTCGGGTAACACANATGGACAACCCAAAACCGGGGAAATTTAGNNTGGCCCCCNCCTGTTGAGCAATTTGGTTCGTTAAAAATTNAACGTTTGAAGGCGTTTTAAAAGCAAAGTTTGGTTTACAAAAACTTGGCCAACAATATTTGGAAAAACAATTGCTCAAACACAATAAAATNCNNGAANAACTCAGNAATAAAACTAACAAACAACTGTGTTTAANACGGTTAAAAAAACNGGGCCCGNNGATTTTCCCANACACATATTCCC]

[+] EMBL BX469748             [CAGAATCCGCACGAGGTATCACACTACATCACTAAGCCGCNTCAGCAACTGGTCTGTATACAATACAAATGTCGGTGTGTGTGTGTGTGTGTGTGTTTAACGGCGATTACGTTGCTTTCTAACAAACTAAACTCACCTTTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCGTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGATACCCGCGGATATAGTGCAAATGCGAATAGAGCGTGATGAGAATGATTCAGGATAGGAGGCGGATGCAAAAGGTGCAGGCAAGACTAAGGGATGGTTGGTTTATGGAAGCCGGTAAGTAAAAAAAGCCGAATTGGAGNAGGCCTTCGGGTTTTNAAAGGCTNTCTTGCCAATGGTTTTGGGTTGTGGAACAACTCTACGTAGTAAAACACTTTTGGGGGACCCACAGAAAGCAAGGGGCATTGAACTTTTGGCACNTCAANCATTCGGGTAACACANATGGACAACCCAAAACCGGGGAAATTTAGNNTGGCCCCCNCCTGTTGAGCAATTTGGTTCGTTAAAAATTNAACGTTTGAAGGCGTTTTAAAAGCAAAGTTTGGTTTACAAAAACTTGGCCAACAATATTTGGAAAAACAATTGCTCAAACACAATAAAATNCNNGAANAACTCAGNAATAAAACTAACAAACAACTGTGTTTAANACGGTTAAAAAAACNGGGCCCGNNGATTTTCCCANACACATATTCCC]


>consensus_8151#1 CAGAATCCGCACGAGGTATCACACTACATCACTAAGCCGCNTCAGCAACTGGTCTGTATA CAATACAAATGTCGGTGTGTGTGTGTGTGTGTGTGTTTAACGGCGATTACGTTGCTTTCT AACAAACTAAACTCACCTTTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGATGG TGGTGAGGAGCCACTTTACCGCGTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGC AACGATACCCGCGGATATAGTGCAAATGCGAATAGAGCGTGATGAGAATGATTCAGGATA GGAGGCGGATGCAAAAGGTGCAGGCAAGACTAAGGGATGGTTGGTTTATGGAAGCCGGTA AGTAAAAAAAGCCGAATTGGAGNAGGCCTTCGGGTTTTNAAAGGCTNTCTTGCCAATGGT TTTGGGTTGTGGAACAACTCTACGTAGTAAAACACTTTTGGGGGACCCACAGAAAGCAAG GGGCATTGAACTTTTGGCACNTCAANCATTCGGGTAACACANATGGACAACCCAAAACCG GGGAAATTTAGNNTGGCCCCCNCCTGTTGAGCAATTTGGTTCGTTAAAAATTNAACGTTT GAAGGCGTTTTAAAAGCAAAGTTTGGTTTACAAAAACTTGGCCAACAATATTTGGAAAAA CAATTGCTCAAACACAATAAAATNCNNGAANAACTCAGNAATAAAACTAACAAACAACTG TGTTTAANACGGTTAAAAAAACNGGGCCCGNNGATTTTCCCANACACATATTCCC



consensusID : consensus_8151#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence
                              [GGCAAGAATCGCCCGAGGTTTAGCGAGGCGCAATNAACGCAAGTAGGTCTGTNNCTGTGGCCGTCTTTTNTCACTCATTGGAGATAACTTCACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGCATCTTACTTCAGACGGNACANGAGGATTGAATACAGTGACTGAAACAAACAAACAAAAAAACTGGAAGGAACAAGGATGCNNATGAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACTGAACCACACAGGAATCGGAAAGGACAATGATAGTTATTGCATGTTTAGATACATTAATCGAGAGCAAAATCCGCGTACGATATTCAATATAATATGCACGTATATCTGGCAAACTTGTACATTGGCCGCACTTAGCACGCGTCAATCATCACACTACATCACTAAGCCGCCATCAGCAACTGTCTGTATTACCAATACAACATGTCGGAGTGTGGTGTGGTTGTGTAGGTGGTGTAAAACGGGGATTTACGTATGGGATTCCTAAAGCAAAAGTAAAATTCAACCATATTCAATAAAGCNTTTAAATGAATTTCGGAACATTGGTTAGAAACGNATTGGTNGTGAAGGAGGCCAAATTTACCGGNTA]

[+] EMBL AL930383             [GGCAAGAATCGCCCGAGGTTTAGCGAGGCGCAATNAACGCAAGTAGGTCTGTNNCTGTGGCCGTCTTTTNTCACTCATTGGAGATAACTTCACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGCATCTTACTTCAGACGGNACANGAGGATTGAATACAGTGACTGAAACAAACAAACAAAAAAACTGGAAGGAACAAGGATGCNNATGAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACTGAACCACACAGGAATCGGAAAGGACAATGATAGTTATTGCATGTTTAGATACATTAATCGAGAGCAAAATCCGCGTACGATATTCAATATAATATGCACGTATATCTGGCAAACTTGTACATTGGCCGCACTTAGCACGCGTCAATCATCACACTACATCACTAAGCCGCCATCAGCAACTGTCTGTATTACCAATACAACATGTCGGAGTGTGGTGTGGTTGTGTAGGTGGTGTAAAACGGGGATTTACGTATGGGATTCCTAAAGCAAAAGTAAAATTCAACCATATTCAATAAAGCNTTTAAATGAATTTCGGAACATTGGTTAGAAACGNATTGGTNGTGAAGGAGGCCAAATTTACCGGNTA]


>consensus_8151#2 GGCAAGAATCGCCCGAGGTTTAGCGAGGCGCAATNAACGCAAGTAGGTCTGTNNCTGTGG CCGTCTTTTNTCACTCATTGGAGATAACTTCACATACACATTACAGTTTACCGATGAGAT ATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTTGCTAGTACAATGTAAGGCTCG TCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGCATCTTACTTCAGACGGNA CANGAGGATTGAATACAGTGACTGAAACAAACAAACAAAAAAACTGGAAGGAACAAGGAT GCNNATGAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACTGAACCACACAGGAA TCGGAAAGGACAATGATAGTTATTGCATGTTTAGATACATTAATCGAGAGCAAAATCCGC GTACGATATTCAATATAATATGCACGTATATCTGGCAAACTTGTACATTGGCCGCACTTA GCACGCGTCAATCATCACACTACATCACTAAGCCGCCATCAGCAACTGTCTGTATTACCA ATACAACATGTCGGAGTGTGGTGTGGTTGTGTAGGTGGTGTAAAACGGGGATTTACGTAT GGGATTCCTAAAGCAAAAGTAAAATTCAACCATATTCAATAAAGCNTTTAAATGAATTTC GGAACATTGGTTAGAAACGNATTGGTNGTGAAGGAGGCCAAATTTACCGGNTA



consensusID : consensus_8151#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence
                              [CCGCCCACGCGTCCGATTAATCGATAGTAACATACAAGCCGCGACGAATTGTTAGCGGTAGCGATAGTTGACGGAGCTGTGCAGTGCTAGTTGTAATGAATATGCTAAGAGATTTTTGCACACGAGATGAACGTAAAATGCTTACATTAATCGCTTTTTAATCTGCAACTTTTGCATTGATCGCTTAACGCCGCCACCACCACTACGCGTACTGGCCGTGTTTGTTCTGGCGCATTGATTTCGCGTATATTTGAAATCTGTTTTACAAAACAACATCACTTTTATGTAAATATCTATATCTTGTAGTAAAAAGAACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGAGATCAGGTTTGCTTGATATGTGTTACGCGAGGCGCAAATGAACGCAAGCAGATCTGTTTGTGGCCGTTTTTTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGATCTTACTTCAGACGGAACAAAGAGGATTGGAATACAGTGA]

[+] EMBL BM631599             [CCGCCCACGCGTCCGATTAATCGATAGTAACATACAAGCCGCGACGAATTGTTAGCGGTAGCGATAGTTGACGGAGCTGTGCAGTGCTAGTTGTAATGAATATGCTAAGAGATTTTTGCACACGAGATGAACGTAAAATGCTTACATTAATCGCTTTTTAATCTGCAACTTTTGCATTGATCGCTTAACGCCGCCACCACCACTACGCGTACTGGCCGTGTTTGTTCTGGCGCATTGATTTCGCGTATATTTGAAATCTGTTTTACAAAACAACATCACTTTTATGTAAATATCTATATCTTGTAGTAAAAAGAACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGAGATCAGGTTTGCTTGATATGTGTTACGCGAGGCGCAAATGAACGCAAGCAGATCTGTTTGTGGCCGTTTTTTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTGCTAGTACAATGTAAGGCTCGTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGATCTTACTTCAGACGGAACAAAGAGGATTGGAATACAGTGA]


>consensus_8151#3 CCGCCCACGCGTCCGATTAATCGATAGTAACATACAAGCCGCGACGAATTGTTAGCGGTA GCGATAGTTGACGGAGCTGTGCAGTGCTAGTTGTAATGAATATGCTAAGAGATTTTTGCA CACGAGATGAACGTAAAATGCTTACATTAATCGCTTTTTAATCTGCAACTTTTGCATTGA TCGCTTAACGCCGCCACCACCACTACGCGTACTGGCCGTGTTTGTTCTGGCGCATTGATT TCGCGTATATTTGAAATCTGTTTTACAAAACAACATCACTTTTATGTAAATATCTATATC TTGTAGTAAAAAGAACTGAAGCTAGCTGCATCGGCTAAACACAGTGCTAATTGGAAATGA GATCAGGTTTGCTTGATATGTGTTACGCGAGGCGCAAATGAACGCAAGCAGATCTGTTTG TGGCCGTTTTTTTTTTCACTATTGGAGATAATTACATACACATTACAGTTTACCGATGAG ATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTGCTAGTACAATGTAAGGCTC GTCGAGACTAAAACACACGAACACTTACCACACTTAGCTTCGATCTTACTTCAGACGGAA CAAAGAGGATTGGAATACAGTGA



consensusID : consensus_8151#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [GTGTGCCTAACGGCATTACGTGCTTTCTAACAAACTAAACTCACTTTTTCAATAAGCTTTATGATTTCGCAACTTGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGATACCCGCGATATAGTGAAATGAGAATAGAGCGTGATGAGAATGATTCGGATAGGAGGCGTATGCAAAGTGCAGCCATGATAAGGATGTGTTATGAGCGTAGTAAAACCCGATGGAGAGCTCGTTTTAAGTTCTCCATGTTTGTGTGAAATAGTAGTACAAATTTGGACAAAAAAGGATGATTGATTATATTGTAAAATGCANACCAACAACGGATTGTGCGCGCGCTGCATTGTGTNANTGAGTGANGCTTANCGACGTGTTAAANATGCACACTTTTGAAATGCAACAAAAAAAGAGTGANGGGATAAAGTAAACGGCTGCATACCACCATCCCGTGTGTGGTGTAAGCATTTGCGAACANNTGTTCAACGCGTTGCCATTNCGCTTTCGNCCGC]

[+] EMBL AL933569             [GTGTGCCTAACGGCATTACGTGCTTTCTAACAAACTAAACTCACTTTTTCAATAAGCTTTATGATTTCGCAACTTGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTGCAACGATACCCGCGATATAGTGAAATGAGAATAGAGCGTGATGAGAATGATTCGGATAGGAGGCGTATGCAAAGTGCAGCCATGATAAGGATGTGTTATGAGCGTAGTAAAACCCGATGGAGAGCTCGTTTTAAGTTCTCCATGTTTGTGTGAAATAGTAGTACAAATTTGGACAAAAAAGGATGATTGATTATATTGTAAAATGCANACCAACAACGGATTGTGCGCGCGCTGCATTGTGTNANTGAGTGANGCTTANCGACGTGTTAAANATGCACACTTTTGAAATGCAACAAAAAAAGAGTGANGGGATAAAGTAAACGGCTGCATACCACCATCCCGTGTGTGGTGTAAGCATTTGCGAACANNTGTTCAACGCGTTGCCATTNCGCTTTCGNCCGC]


>consensus_8151#4 GTGTGCCTAACGGCATTACGTGCTTTCTAACAAACTAAACTCACTTTTTCAATAAGCTTT ATGATTTCGCAACTTGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCTGCTTAAATT CGAGGGCAGCATTTGGATGAGGCGTGCAACGATACCCGCGATATAGTGAAATGAGAATAG AGCGTGATGAGAATGATTCGGATAGGAGGCGTATGCAAAGTGCAGCCATGATAAGGATGT GTTATGAGCGTAGTAAAACCCGATGGAGAGCTCGTTTTAAGTTCTCCATGTTTGTGTGAA ATAGTAGTACAAATTTGGACAAAAAAGGATGATTGATTATATTGTAAAATGCANACCAAC AACGGATTGTGCGCGCGCTGCATTGTGTNANTGAGTGANGCTTANCGACGTGTTAAANAT GCACACTTTTGAAATGCAACAAAAAAAGAGTGANGGGATAAAGTAAACGGCTGCATACCA CCATCCCGTGTGTGGTGTAAGCATTTGCGAACANNTGTTCAACGCGTTGCCATTNCGCTT TCGNCCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8151#0      CCGGCGAAAGCGAAAGAGAACGTTTCCAATCTTCCAGTCGTTTTGTATTTTGTGCCCTGC 60
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      GAAAAAAAAATTCCCCCGCACTCTCTACCATTTTTGTATTTAAAAAAAAGCCCCGATTTT 120
consensus_8151#3      -----------------------------------------------------------C 1
consensus_8151#2      ---------------------------------------------------GGCAAGAAT 9
consensus_8151#1      -----------------------CAGAATCCGCACGAGGTATCACACTACATCACTAAGC 37
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      TGCGGT--------AACAACACATTAATCGATAGTAACATACAAGCCGCAACGAATTGT- 171
consensus_8151#3      CGCCCA--------CGCGTCCGATTAATCGATAGTAACATACAAGCCGCGACGAATTGT- 52
consensus_8151#2      CGCCCGAGGTTTAGCGAGGCGCAATNAACGCAAGTAGGTCTGTNNCTGTGGCCGTCTTT- 68
consensus_8151#1      CGCNTCAGCAACTGGTCTGTATACAATACAAATGTCGGTGTGTGTGTGTGTGTGTGTGTT 97
consensus_8151#4      -----------------------------------------------------GTGTGCC 7
                                                                              *   

consensus_8151#0      TAGCGGTTGCGATAG-TTGACGGAGC-TGTGCAGTGCTAGTTGT-AATGA-ATATGCTAA 227
consensus_8151#3      TAGCGGTAGCGATAG-TTGACGGAGC-TGTGCAGTGCTAGTTGT-AATGA-ATATGCTAA 108
consensus_8151#2      TNTCACTCATTGGAG-ATAACTTCACATACACATTACAGTTTACCGATGAGATATACTAA 127
consensus_8151#1      TAACGGCGATTACGTTGCTTTCTAACAAACTAAACTCACCTTTTCAATAAGCTTTATGAT 157
consensus_8151#4      TAACGGC-ATTACGT-GCTTTCTAACAAACTAAACTCACTTTTTCAATAAGCTTTATGAT 65
                      *  *                     *      *   *   **    ** *  * *   * 

consensus_8151#0      GAGATTTTTG-CACGCGAGATGAACGTAAAATGCT--TACATTA-ATCGCTTTTTAAT-C 282
consensus_8151#3      GAGATTTTTG-CACACGAGATGAACGTAAAATGCT--TACATTA-ATCGCTTTTTAAT-C 163
consensus_8151#2      ACGACGAACGGCTTGGGAGGCTTGGGTGATTTGCTAGTACAATGTAAGGCTCGTCGAGAC 187
consensus_8151#1      TTCGCAACATGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGCGTGCTTAAATTCGAG 217
consensus_8151#4      TTCGCAACTTGTTAGAAAGATGGTGGTGAGGAGCCACTTTACCGC-TGCTTAAATTCGAG 124
                                       **      ** *   **   *  *         *         

consensus_8151#0      TGCAACTTTTG--CATTGATCGC--TTAACGCCGCCACCACCACT---ACGCGTACTGGC 335
consensus_8151#3      TGCAACTTTTG--CATTGATCGC--TTAACGCCGCCACCACCACT---ACGCGTACTGGC 216
consensus_8151#2      TAAAACACACGAACACTTACCACACTTAGCTTCGCATCTTACTTC---AGACGGNACANG 244
consensus_8151#1      GGCAGCATTTGGATGAGGCGTGCAACGATACCCGCGGATATAGTGCAAATGCGAATAGAG 277
consensus_8151#4      GGCAGCATTTGGATGAGGCGTGCAACGATACCCGCG-ATATAGTG-AAATGAGAATAGAG 182
                         * *    *           *    *    ***             *   *       

consensus_8151#0      CGTGTTTGTTCTGGCGCATTGATTTCGCGTATATTTGAAATCTGTTTTACAAAACAACAT 395
consensus_8151#3      CGTGTTTGTTCTGGCGCATTGATTTCGCGTATATTTGAAATCTGTTTTACAAAACAACAT 276
consensus_8151#2      AGGATTGAATACAGTG-ACTGAAA-CAAACAAACAAAAAAACTGG---AAGGAACAAGGA 299
consensus_8151#1      CGTGATGAGAATGATTCA-GGATAGGAGGCGGATGCAAAAGGTGCAG-GCAAGACTAAGG 335
consensus_8151#4      CGTGATGAGAATGATTC--GGATAGGAGGCGTATGCAAA--GTGCAG-CCATGATAAGGA 237
                       *   *              **          *    **   **         *  *   

consensus_8151#0      CACTTTTATGTAAATATCTATATCTTG----CAGTAAAAAG--AACTGAAGCTAGCTGC- 448
consensus_8151#3      CACTTTTATGTAAATATCTATATCTTG----TAGTAAAAAG--AACTGAAGCTAGCTGC- 329
consensus_8151#2      TGCNNATGAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACTGAACCACACAGG- 358
consensus_8151#1      GATGGTTGGTT---TATGGAAGCCGGTA-AGTAAAAAAAGCCGAATTGGAGNAGGCCTTC 391
consensus_8151#4      TGTG------T---TATG--AGC-------GTAGTAAAACCCGATGGAGAGCTCGTTTT- 278
                                    ***               *  ****    *     *          

consensus_8151#0      -ATCGGCTAAACACAGTGCTAATTGG------------------AAATGAGATCAGG-TT 488
consensus_8151#3      -ATCGGCTAAACACAGTGCTAATTGG------------------AAATGAGATCAGG-TT 369
consensus_8151#2      -AATCGGAAAGGACAATGATAGTTATTGCATGTTTAGATACATTAATCGAGAGCAAAATC 417
consensus_8151#1      GGGTTTTNAAAGGCTNTCTTGCCAATGGTTT---------TGGGTTGTGGAACAACTCTA 442
consensus_8151#4      AAGTTCTCCATGTTTGTGTGA--AATAGTAG---------TACAAATTTGGACAAAAAAG 327
                               *      *                                  *  *     

consensus_8151#0      TGCTTGATATGTGTTACGCGAGGCGCAAATGAACGCAAGTAGGTCTGTTTGT-GGCCGTT 547
consensus_8151#3      TGCTTGATATGTGTTACGCGAGGCGCAAATGAACGCAAGCAGATCTGTTTGT-GGCCGTT 428
consensus_8151#2      CGCGTACGATATTCAATATAATATGCACGTATAT-CTGGCAAACTTGTACATTGGCCGCA 476
consensus_8151#1      CGTAGTAAAACACTTTTGGGGGACCCACAGAAAG-CAAGGGGCATTGAACTTTTGGCACN 501
consensus_8151#4      GATGATTGATTA-TATTGTAAAATGCANACCAA--CAACGG--ATTGTGCGCGCGCTGCA 382
                              *                **     *  *         **       *     

consensus_8151#0      TTT--------TT---CACTATTGGAGATAATTACATACACATTA-CAGTTTACCG-ATG 594
consensus_8151#3      TTT--------TTTTTCACTATTGGAGATAATTACATACACATTA-CAGTTTACCG-ATG 478
consensus_8151#2      CTTAGCACGCGTCAATCATCACACTACATCACTAAGCCGCCATCAGCAACTGTCTGTATT 536
consensus_8151#1      TCAAN------CATTCGGGTAACACANATGGACAACCCAAAACCGGGGAAATTTAGNNTG 555
consensus_8151#4      TTGTG------TNANTGAGTGANGCTTANCGACGTGTTAAANATGCACACTTTTGAAATG 436
                                                 *                              * 

consensus_8151#0      AGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTGCTAGTACAATGTAAGGC 654
consensus_8151#3      AGATATACTAAACGACGAACGGCTTGGGAGGCTTGGGTGATTGCTAGTACAATGTAAGGC 538
consensus_8151#2      ACCAATACAACATGTCGGA--GTGTGGTGTGGTTGTGTAGGTGGT-GTAAAACGGGGATT 593
consensus_8151#1      GC---CCCCNCCTGTTGAGCAATTTGGTTCGTTAAAA--ATTNAACGTTTGAAGGCGTTT 610
consensus_8151#4      -----CAACAAAAAAAGAGTGANGGGATAAAGTAAA-----CGGCTGCATACCACCATCC 486
                                      *        *      *             *             

consensus_8151#0      T-CGT-CGAGA---CTAAAACACACGAACACTT-----ACCACACTTAGCTTCGATCTTA 704
consensus_8151#3      T-CGT-CGAGA---CTAAAACACACGAACACTT-----ACCACACTTAGCTTCGATCTTA 588
consensus_8151#2      TACGTATGGGATTCCTAAAGCAAAAGTAAAATTC---AACCATATTCAATAAAGCNTTTA 650
consensus_8151#1      TAAAAGCAAAG---TTTG-GTTTACAAAAACTTGGCCAACAATATTTGGAAAAACAATTG 666
consensus_8151#4      CGTGTGTGGTG---TAAGCATTTGCGAACANNTGTTCAACGCGTTGCCATTNCGCTTTCG 543
                                                 * *  *     **                 *  

consensus_8151#0      CTTCAGA--CGGAACAA-GAGGATTG-AATACAGTGACTGAAACAAACAAACAAAAAAAC 760
consensus_8151#3      CTTCAGA--CGGAACAAAGAGGATTGGAATACAGTGA----------------------- 623
consensus_8151#2      AATGAATTTCGGAACAT--TGGTTAGAAACGNATTGGTNGTGAAGGAGGCCAAATTTACC 708
consensus_8151#1      CTCAAACACAATAAAAT--NCNNGAANAACTCAGNAATAAAACTAACAAACAACTGTGTT 724
consensus_8151#4      NCCGC------------------------------------------------------- 548
                                                                                  

consensus_8151#0      TGGAAGGAAAAGGATGCAATGAACTGATATTAAAACGACGAGACCAGCAAAAGGTGAACT 820
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      GGNTA------------------------------------------------------- 713
consensus_8151#1      TAANACGGTTAAAAAAACNGGGCCCGNNGATTTTCCCANACACATATTCCC--------- 775
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      GAACCACACAGGAATCGGAAAGGAAATGATAGTTATGCATGTTTAGATACATTAATCGAG 880
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      AGCAAAACTCCGCGTACGATATTAATATAATATGCACGTTTATATCTGCAACTGTAATTG 940
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      CCGCCACTTAGCAGCGTAATCATCACACTACATCACTAAGCCGCATCAGCAACTGTCTGT 1000
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      ATACAATACAAATGTCGGTGTGTGTGTGTGTGTGTGTGTTTAACGGCATTACGTTGCTTT 1060
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      CTAACAAACTAAACTCACCTTTTCAATAAGCTTTATGATTTCGCAACATGTTAGAAAGAT 1120
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      GGTGGTGAGGAGCCACTTTACCGCTGCTTAAATTCGAGGGCAGCATTTGGATGAGGCGTG 1180
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      CAACGATACCGCGATATAGTGAAATGAGAATAGAGCGTGATGAGAATGATTCAGATAGCA 1240
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      AGGGGATGCAAAACAGCATGATAAGGATGTGTTATGAGCGTAGTAAAAACCGATGGAGAG 1300
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      CTCGTNTTAAGCTCTCCATGTTTGTGTGAAATAGTAGTAAAATTTGGACAAAAAANGATG 1360
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      ATNGATTATATTGTAAAATGAAACAAAACNGATNGTGCGCGCGTGCATTGTGTAAATGAG 1420
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      TGAGCTGAAGAGTGTTAAAATGCAATTTGAAATGCAACACAAAAAAGAGTGAAGGGATAA 1480
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      AGTAAACGGCTGCATACCACCATCCCGTGTGTGGTGTAAGCGTTTGTGAAAATGTTAAAC 1540
consensus_8151#3      ------------------------------------------------------------
consensus_8151#2      ------------------------------------------------------------
consensus_8151#1      ------------------------------------------------------------
consensus_8151#4      ------------------------------------------------------------
                                                                                  

consensus_8151#0      GCG 1543
consensus_8151#3      ---
consensus_8151#2      ---
consensus_8151#1      ---
consensus_8151#4      ---
                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)