These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 813 fasta sequence [CCGCGAGGTTAAACACACTCCCTCCATTTTTCGGCCAACCGCGGCATGTAAAATCAGGAAGTGCTGCGAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGAGCT-GGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGAACTCAAGAGCTACAATTCGCTGATGAAGCCGGAAAACATGACCTCCAACTATGACGCCGGCAACGATTCGGATGAGTTTATGTAAGGCGACGGAGGTGGCGCGGAGAGGAGAGAGATAACGAAACTGGGTCAAGCGGGGCGGAAGATTGCGGATTACGAATAA] [+] EMBL BM612424 [CCGCGAGGTTAAACACACTCCCTCCATTTTTCGGCCAACCGCGGCATGTAAAATCAGGAAGTGCTGCGAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGAC ] [+] EMBL BM615111 [ ccgCGCGGCATGTAAAATCAGGAAGTGCTGCGAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATTGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTCCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGACTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCAGAGCGGGAAAAGCGGGACGCACTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGAGCT GGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGAACTCAAGAGCTACAATTCGCTGATGAAGCCGGAAAACATGACCT ] [+] EMBL CNS08JBS [ ccGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCA CAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCGGA CGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGA CTGGGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGAACTCAAGAGCTACAATTCGCTaaaa ] [-] EMBL CNS08JBT [ TCGTCGGCCCACGTGTA CTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGAGCT GGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGTACTCAAGAGCTACAATTCGCTGATGAAGCCGGAAAACATGACCTCCAACTATGACGCCGGCAACGATTCGGATGAGTTTATGTAAGGCGACGGAGGTGGCGCGGAGAGGAGAGAGATAACGAAACTGGGTCAAGCGGGGCGGAAGATTGCGGATTACGAATAA] [+] EMBL BX616568 [ CCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATTTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCCAGCGGGAGGAGACGGTCGACTTCCGGGCGGAGCGGGAAAAGCGGGACGCTCT ] consensusID : consensus_8156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [AGAATNGCCCGACGGTTTATACAGTACGAAAGTGAGTGTTTGTTGCTGCGCCCCCGGGGGTGTTCCGAATCGGTGACCACAAATTATTCACCGTTTTCTCTCTTCTCCAATCCACACACACACACACACACACACACACACACACACACACAGATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGATCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCTGTGCTGGAAGACAGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATANAGGACGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACATTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGATGGCCCGGGAGCAGACGGGAGCTGGCAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCCAGAACTCAAGAGCTAC] [+] EMBL AL694297 [AGAATNGCCCGACGGTTTATACAGTACGAAAGTGAGTGTTTGTTGCTGCGCCCCCGGGGGTGTTCCGAATCGGTGACCACAAATTATTCACCGTTTTCTCTCTTCTCCAATCCACACACACACACACACACACACACACACACACACACACAGATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGATCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCTGTGCTGGAAGACAGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATANAGGACGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACATTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGATGGCCCGGGAGCAGACGGGAGCTGGCAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCCAGAACTCAAGAGCTAC] consensusID : consensus_8156#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CCGAGGTTATCAGCGATTCCGAAAAGCATCCGTGAACACGATGTGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGTGTTGGACAAGTACGAAAATAGAGTGACCTGATTCGATGGGNGCTGGCCGGAGGATGTGTGGTTTCACTGTGAACAAGGTCTCGTCGTGCCCACGTGTACCTGCGGCTCTGAGCCTGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAACGACTGCCTGACAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCCGTGTACCACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTTGGGCCAGGTGGCTGTTCCACCGCGATAAGGAGGTGCGCATGTTCGGGTGGANAAAGCGCAGCCAACGAGATAGTGAACCGGCTGAACAAGGACCCAAGCCGGGAGGAGACAGGTCGACTTCCGGGCGGAGCGGGGAAAAGCGGGACGCTCTTGGAGCCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCCAGCGGGAGCTTGGCAGCAAAGAGGATCTGCAACGGCGGCAGGAAG] [+] EMBL AL693104 [CCGAGGTTATCAGCGATTCCGAAAAGCATCCGTGAACACGATGTGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGTGTTGGACAAGTACGAAAATAGAGTGACCTGATTCGATGGGNGCTGGCCGGAGGATGTGTGGTTTCACTGTGAACAAGGTCTCGTCGTGCCCACGTGTACCTGCGGCTCTGAGCCTGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAACGACTGCCTGACAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCCGTGTACCACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTTGGGCCAGGTGGCTGTTCCACCGCGATAAGGAGGTGCGCATGTTCGGGTGGANAAAGCGCAGCCAACGAGATAGTGAACCGGCTGAACAAGGACCCAAGCCGGGAGGAGACAGGTCGACTTCCGGGCGGAGCGGGGAAAAGCGGGACGCTCTTGGAGCCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCCAGCGGGAGCTTGGCAGCAAAGAGGATCTGCAACGGCGGCAGGAAG] consensusID : consensus_8156#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence [TCACGGCAGAATCCGACGAGTGNATACAAAAACTAAACAACGTTTCCCCGATTCCTGACAAAGCATCCGTGAACACGATGGTATTTTACTTCACCAGCAATGTCGTTACAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAG-GACCTGATACGATGGGGCTGGCCTGGAGGATGTGTGGTTTCACGTGAACAAAGGGTCTCGTCGGCCACGTGTACCTGCGGCTCGAGCCGGGCAAACGCTGGACTGACTACTGTCGGCCCGTGCCTGGAAGACCTGCCCTGCAGGCTGGGTGAAGGGCGAACAGGCATCAACTGGCCAACAAGATTGAACCAAACAATCCGAAACATCCGTTGGTAACCACGGAATTGGTTNGTGGAACCAAAATCCTTGGAAAGGAAAAGAACCGGCCCCCGGCCGGAATTGGGGAAGGGTTGGGGCCCNAAGGGTTGGGGGCTGGTTTCCCCAACCCCGGGGGAATTAAA] [+] EMBL BX466143 [TCACGGCAGAATCCGACGAGTGNATACAAAAACTAAACAACGTTTCCCCGATTCCTGACAAAGCATCCGTGAACACGATGGTATTTTACTTCACCAGCAATGTCGTTACAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAG GACCTGATACGATGGGGCTGG ] [+] EMBL AL931053 [ gccgaggCTGA AAAGCAT CGTGAACACGATGGTATTTTACTTCACCAGCAATGTCGTT CAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGTGACCTGATTCGATGGGGCTGGCCTGGAGGATGTGTGGTTTCACGTGAACAAAGGGTCTCGTCGGCCACGTGTACCTGCGGCTCGAGCCGGGCAAACGCTGGACTGACTACTGTCGGCCCGTGCCTGGAAGACCTGCCCTGCAGGCTGGGTGAAGGGCGAACAGGCATCAACTGGCCAACAAGATTGAACCAAACAATCCGAAACATCCGTTGGTAACCACGGAATTGGTTNGTGGAACCAAAATCCTTGGAAAGGAAAAGAACCGGCCCCCGGCCGGAATTGGGGAAGGGTTGGGGCCCNAAGGGTTGGGGGCTGGTTTCCCCAACCCCGGGGGAATTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8156#0 CCGCGAGGTTAAACACACTCCCTCCATTTTTCGGCCAACCGCGGCATGTAAAATCAGGAA 60 consensus_8156#1 --------------AGAATNGCCCGACGGTTTA------TACAGTACG-AAAGTGAGTGT 39 consensus_8156#2 ------------------------------------------------------------ consensus_8156#3 -----------------------TCACGGCAGAA-----TCCGACGAGTGNATACAAAAA 32 consensus_8156#0 GTGCTGC-GAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTA 119 consensus_8156#1 TTGTTGCTGCGCCCCCGGGGGTGTTCCGAATCGGTGACCACAAATTATT-CACCGTTTTC 98 consensus_8156#2 --------CCGAGGTTATCAGCGATTCCGAAAAGCATCCGTGAACACGATGTGTATTTTA 52 consensus_8156#3 CTAA-ACAACGTTTCCCCGAT--TCCTGACAAAGCATCCGTGAAC-ACGATGGTATTTTA 88 * * ** ** **** consensus_8156#0 CTTCACCAGCAATGTCGT-TCAGCCACCGGTGACCCTGTTCATGGGGTT-GGACAAGTAC 177 consensus_8156#1 TCTCTTCTCCAAT-CCAC-ACACACACA------CACACACACACACAC-ACACACACAC 149 consensus_8156#2 CTTCACCAGCAATGTCGT-TCAGCCACCGGTGACCCTGTTCATGGGTGTTGGACAAGTAC 111 consensus_8156#3 CTTCACCAGCAATGTCGTTACAGCCACCGGTGACCCTGTTCATGGGGTT-GGACAAGTAC 147 ** * **** * ** *** * ** *** ** consensus_8156#0 GAAAATGAGG--ACCTGATTCGATGGGG-CTGGCCGGAGGATGTGTGGTTTCAC-GTGAA 233 consensus_8156#1 ACAGATGAGG--ACCTGATTCGATGGGG-CTGGCCGGAGGATGTGTGGTTTCAC-GTGAA 205 consensus_8156#2 GAAAATAGAGTGACCTGATTCGATGGGNGCTGGCCGGAGGATGTGTGGTTTCACTGTGAA 171 consensus_8156#3 GAAAATGAGG--ACCTGATACGATGGGGCTGGCCTGGAGGATGTGTGGTTTCAC-GTGAA 204 * ** * ******* ******* * * ******************* ***** consensus_8156#0 CAAGGTCTCG-TCGGCCCACGTGTACCTGCGGCTC-GAGCC-GGGCCAAACGCTGGACGA 290 consensus_8156#1 CAAGGTCTCGATCGGCCCACGTGTACCTGCGGCTC-GAGCC-GGGCCAAACGCTGGACGA 263 consensus_8156#2 CAAGGTCTCGTCGTGCCCACGTGTACCTGCGGCTCTGAGCCTGGGCCAAACGCTGGACGA 231 consensus_8156#3 CAAAGGGTCTCGTCGGCCACGTGTACCTGCGGCTC-GAGCC--GGGCAAACGCTGGACTG 261 *** * ** * ******************* ***** ** ************ consensus_8156#0 CATACCGTCGGCC-GTGCTGGAA-GAC---GCCTGCCAGCTGG-TGAAGG-CGAACAG-C 342 consensus_8156#1 CATACCGTCGGCCTGTGCTGGAA-GACA--GCCTGCCAGCTGG-TGAAGG-CGAACAG-C 317 consensus_8156#2 CATACCGTCGGCC-GTGCTGGAACGACT--GCCTGACAGCTGG-TGAAGG-CGAACAG-C 285 consensus_8156#3 ACTACTGTCGGCCCGTGCCTGGAAGACCTGCCCTGCAGGCTGGGTGAAGGGCGAACAGGC 321 *** ******* **** * * *** **** ***** ****** ******* * consensus_8156#0 ATCAACGG--CAACAAGAT-GAAC--AACATC----GACATC-GT--GTA-C-ACGATGT 388 consensus_8156#1 ATCAACGG--CAACAAGAT-GAAC--AACATC----GACATC-GT--GTA-C-ACGATGT 363 consensus_8156#2 ATCAACGG--CAACAAGAT-GAAC--AACATC----GACATCCGT--GTA-CCACGATGT 333 consensus_8156#3 ATCAACTGGCCAACAAGATTGAACCAAACAATCCGAAACATCCGTTGGTAACCACGGAAT 381 ****** * ********* **** **** ***** ** *** * *** * consensus_8156#0 GGGACAATCTGAAGAAGACGCCCGCGATGGAGGT-GGGCCAGGTGGC-GTTCCACCGCGA 446 consensus_8156#1 GGGACAATCTGAAGAAGACGCCCGCGATGGAGGT-GGGCCAGGTGGC-GTTCCACCGCGA 421 consensus_8156#2 GGGACAATCTGAAGAAGACGCCCGCGATGGAGGTTGGGCCAGGTGGCTGTTCCACCGCGA 393 consensus_8156#3 TGGTTNGTGGAACCAAAATCCTTGGAAAGGAAAA-GAACCGGCCCCCGGCCGGAATTGGG 440 ** * * ** * * * * *** * ** * * * * * consensus_8156#0 TAAGGA--GGTGCGCAT---GTTTCGGGTGGAAAAGCGCAGC-AACGAGATAGTGAACCG 500 consensus_8156#1 TANAGGACGGTGCGCAT---GTTTCGGGTGGAAAAGCGCAGC-AACGAGATAGTGAACCG 477 consensus_8156#2 TAAGGA--GGTGCGCAT---GTTCGGGTGGANAAAGCGCAGCCAACGAGATAGTGAACCG 448 consensus_8156#3 GAAGGGTTGGGGCCCNAAGGGTTGGGGGCTGGTTTCCCCAACCCCGGGGGAATTAAA--- 497 * * ** ** * *** ** * ** * * * * * ** consensus_8156#0 GCTGAACAAGA--CCAAGC-GGGAGGAGAC-GGTCGAC-TTCCGGGCGGAGCGGG-AAAA 554 consensus_8156#1 GCTGAACAAGA--CCAAGC-GGGAGGAGAC-GGTCGACATTCCGGGCGGAGCGGG-AAAA 532 consensus_8156#2 GCTGAACAAGGACCCAAGCCGGGAGGAGACAGGTCGAC-TTCCGGGCGGAGCGGGGAAAA 507 consensus_8156#3 ------------------------------------------------------------ consensus_8156#0 GCGGGACGCTCT-GGAGC-GGGCCGACAAGAAGCGGCTGGCCCGGGAGCAG-CGGGAGCT 611 consensus_8156#1 GCGGGACGCTCT-GGAGC-GGGCCGACAAGAAGCGGATGGCCCGGGAGCAGACGGGAGCT 590 consensus_8156#2 GCGGGACGCTCTTGGAGCCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCCAGCGGGAGCT 567 consensus_8156#3 ------------------------------------------------------------ consensus_8156#0 -GG-AG-AAGGAGGATCTGAAGCGGCGGCAGGAGGAGGC-AGAACTCAAGAGCTACAATT 667 consensus_8156#1 -GGCAG-AAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCCAGAACTCAAGAGCTAC---- 644 consensus_8156#2 TGGCAGCAAAGAGGATCTGCAACGGCGGCAGGAAG------------------------- 602 consensus_8156#3 ------------------------------------------------------------ consensus_8156#0 CGCTGATGAAGCCGGAAAACATGACCTCCAACTATGACGCCGGCAACGATTCGGATGAGT 727 consensus_8156#1 ------------------------------------------------------------ consensus_8156#2 ------------------------------------------------------------ consensus_8156#3 ------------------------------------------------------------ consensus_8156#0 TTATGTAAGGCGACGGAGGTGGCGCGGAGAGGAGAGAGATAACGAAACTGGGTCAAGCGG 787 consensus_8156#1 ------------------------------------------------------------ consensus_8156#2 ------------------------------------------------------------ consensus_8156#3 ------------------------------------------------------------ consensus_8156#0 GGCGGAAGATTGCGGATTACGAATAA 813 consensus_8156#1 -------------------------- consensus_8156#2 -------------------------- consensus_8156#3 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||