These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1545 fasta sequence [CCG-GCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGCGAAAACGGGCTCGGGGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGCAACCACCAGCAGGGACAGGAGCGTCTCGATCAAAGCGGCTACCAGAATGCCGGCGGACAGCAGCAGCACCAGCAGCAGCAACCTCCCCAAGGCTGGAACCAGGGATCGCTCCCGGACATTAATCCGGCCAACATCAATCTGGACCAGTTCAACGGGCACGTCTATCCCATCCACACCGGTGGCTACACGGGCGAAGACCAGGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGTTGGCCGCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAATTCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTACAGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGCACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATTAATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACTGAGGTCAGCCGACGAAGGGTGGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGGTGTGTTTCC--CTTTTTTTAGGCTGGTGCTGCTCCAAACGGCAATTAGACAGTGCTAAAGAGAAGGCTTGGAGGGGAAGATGTTAATCGTTTCATGCGTGATGATTATGTGCGAAACGAGGCGGAATGTTTAATTCGTTGGTCGAGTGATTGCGAACGCAAAGATGAATGGGAACCGTG] [+] EMBL BM609281 [CCGAGCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGCATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGCTCCTGCGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCTCGCACGTACGTCGATCTTCGTGG ] [+] EMBL BM582134 [CCG GCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGCATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGCTCCTGCGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCTCGCACGT ] [+] EMBL BM596120 [ ccgAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTATTCTGCTTCACTTTCTCGTTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTA ] [+] EMBL BX607198 [ GGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGTTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTGGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTCCGGTTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCACCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGCGAAAACGGGCTCGGGGAGCAGCAAC ] [+] EMBL BX603322 [ TTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTGGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTCCG ] [+] EMBL BM630885 [ ccGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTAC GTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGTGAAAACGGGCTCGGCGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGCAACCACCAGCAGGGACAGGAGCGTCTCGATCAAAG ] [+] EMBL BX617753 [ GATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGCGAAAACGGGCTCGGGGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGCAACCACCAGCAGGGACAGGAGCGTCTCGATCAAGCCGGCTACCAGAATGCCGGCGGACAGCAGCAGCACCAGCAGCAGCAACCTCCCCAAGGCTGGAACCAGGGATCGCTCCCGGACATTAATCCGGCCAACATCAATCTGGACCAGTTCAACGGGCACGTCTATCCCATCCACACCGGTGGCTACACGGGCGAAGACCAGGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGTTGGCCGCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAATTCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTACAGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGCACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATTAATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACTGAGGTCAGCCGACGAAGGGTGGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGGTGTGTTTCC CTTTTTTTAGGCTGGTGCTGCT ] [+] EMBL BM605931 [ ccGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGCTTGCCGCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAATTCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTACAGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGCACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATTAATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACCGAGGTCAGCCGACGAAGGGTGGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGTTGTGTTTCCTTTTTTTTTTAGTCTGTTGCTGCTCCAAACGGCAATTAGACAGTGCTAAAGAGAAGGCTTGGAGGGGAAGATGTTAATCGTTTCATGCGTGATGATTATGTGCGAAACGAGGCGGAATGTTTAATTCGTTGGTCGAGTGATTGCGAACGCAAAGATGAATGGGAACCGTG] consensusID : consensus_8163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [CAGAATGCCNACGTTATTACAGAGACAGGAGCTAAGGGTTTGGGTGTCGCTGTTCAGTTTCACTTTCTCGTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTTGTACCATACTGGCAGCGATATTGAATCGCGAGGGCGAACTTCAGATCTACCGGTTACCCAACTTGGTTTGGGCCCAAGGGGAAAACCCAAACGGGGGCTTTTGGGAAAAACCAAAAACATTTACCAAAGGGAGAGTATTNCCCCCAAAGGAGCCAACCAACAAGGGGTTAACACTGGGGGAGGCACACCCACCAGTGGCAAACTTTACGGANAATTTCGGGTTTCGGAAACCCCAGGGGATTTAACCAGGAGGGCTATTAGGCCATTAAACCACGCTGGTCGCTTTTAACCAAGATTTTACCCCTGTGGCAAACCACTTTTCCCACCCACACCATTTTCCCCC] [+] EMBL AL694545 [CAGAATGCCNACGTTATTACAGAGACAGGAGCTAAGGGTTTGGGTGTCGCTGTTCAGTTTCACTTTCTCGTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTTGTACCATACTGGCAGCGATATTGAATCGCGAGGGCGAACTTCAGATCTACCGGTTACCCAACTTGGTTTGGGCCCAAGGGGAAAACCCAAACGGGGGCTTTTGGGAAAAACCAAAAACATTTACCAAAGGGAGAGTATTNCCCCCAAAGGAGCCAACCAACAAGGGGTTAACACTGGGGGAGGCACACCCACCAGTGGCAAACTTTACGGANAATTTCGGGTTTCGGAAACCCCAGGGGATTTAACCAGGAGGGCTATTAGGCCATTAAACCACGCTGGTCGCTTTTAACCAAGATTTTACCCCTGTGGCAAACCACTTTTCCCACCCACACCATTTTCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8163#0 CCGGCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAG 60 consensus_8163#1 -CAG-AATGCCNACGTTATTACAGAGACAGGAGCTAAGGGTTT-GGGTGTCGCTGTTCAG 57 * * * * * * *** *********************** ****** ********* consensus_8163#0 TTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGC 120 consensus_8163#1 TTTCACTTTCTCGT-CAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGC 116 ************** * ******************************** ********** consensus_8163#0 GGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGT-GTAC 179 consensus_8163#1 GGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTTGTAC 176 ******************************************************* **** consensus_8163#0 CATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAAC 239 consensus_8163#1 CAT-------ACTGGCAGCGAT----ATTGAATCGCGAGGGCGAACTTCAGAT------C 219 *** * * ***** *** ** ** * * * **** * consensus_8163#0 AATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTAC 299 consensus_8163#1 TACCGGTTACCCAACTTGGTTTGGGCCCAAGGGGAAAACCCAAACGGGGGCTTTTGGGAA 279 * * *** * ** *** ** ** * ** * **** *** * * consensus_8163#0 GTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGG 359 consensus_8163#1 AAA-------CCAAAAACATTTACCAAAGGGAGAGTATTNCCC-CCAAAGGAGCCAACCA 331 **** ** *** * * * * ** * * * ** * * consensus_8163#0 ATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAAC 419 consensus_8163#1 ACAAG------GGGTTAACACTGGGGGAGGCACACCCACCAG-TGGCAAACTTTACGGAN 384 * * * ** * ** **** * ** * ** ** * * * consensus_8163#0 AAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAAT 479 consensus_8163#1 AATTTCG--GGTTTCGGAAACCCCAGGGGATTTAACCAGGAGG-GCTA---TTAGGCCAT 438 ** * * *** * ** * ** * ** ** *** * ** * * ** consensus_8163#0 CTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAAT 539 consensus_8163#1 TAAACCACGCTGG----TCGCTTTT-----AACCAAGATTTTACCCCTGTGGCAAACCAC 489 ** ** * * ***** *** ** * * **** ** * * * consensus_8163#0 CAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTG 599 consensus_8163#1 TTTTCCCACCCACACCATTTTCCCCC---------------------------------- 515 *** * ** * ** * ** consensus_8163#0 ACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACA 659 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 CCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGC 719 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 GAAAACGGGCTCGGGGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGC 779 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 AACCACCAGCAGGGACAGGAGCGTCTCGATCAAAGCGGCTACCAGAATGCCGGCGGACAG 839 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 CAGCAGCACCAGCAGCAGCAACCTCCCCAAGGCTGGAACCAGGGATCGCTCCCGGACATT 899 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 AATCCGGCCAACATCAATCTGGACCAGTTCAACGGGCACGTCTATCCCATCCACACCGGT 959 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 GGCTACACGGGCGAAGACCAGGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGTTGGCC 1019 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 GCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAAT 1079 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 TCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTAC 1139 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 AGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGC 1199 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 ACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATT 1259 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 AATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACTGAGGTCAGCCGACGAAGGGT 1319 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 GGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGGTGTGTTTCCCT 1379 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 TTTTTTAGGCTGGTGCTGCTCCAAACGGCAATTAGACAGTGCTAAAGAGAAGGCTTGGAG 1439 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 GGGAAGATGTTAATCGTTTCATGCGTGATGATTATGTGCGAAACGAGGCGGAATGTTTAA 1499 consensus_8163#1 ------------------------------------------------------------ consensus_8163#0 TTCGTTGGTCGAGTGATTGCGAACGCAAAGATGAATGGGAACCGTG 1545 consensus_8163#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||