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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 964 fasta sequence
[CGACCCACGCGTCCGGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCACCGTGTGTTTGGTTTCCTACGGGAGCTGCGCTTCCGAACCAATCGAAAGCAATTTCCGGATTTAGGGCAACTTTCCTCGCCCATTCCCCCTCCCCGTAGTGAGTGCAAAAAGTGTGCAGCGTGTCAGTCCGTGCTGCATCCCCGTCAGCATCGTAGTGTGCATTGCGTATCGTGGGCCCATCATCTCCCATCCCCCACGTTTCCACACATTTTTCGCTGTATTGTGCGACCGCGTGTTGCATGTTGACGACGGCAACATGTCCTACCGAATACTGCGCAAGCTGCAGGGGAACGAGCTGGAGATAAAGGAACAGATCGATGAGGTGTCGGACGGTGGCGATGCCGATTACGACACCAACAGCACCAGCAGCCAGAACCGCAACAACAGCAAGAAGCAGCTCAACATCAATCGATACGATCTGCTGAACCAGCAACAGTCGCTGTCCGAGAGCGAGGTAAAGGAGGACGACAACGATGAGACGGAAAAGGATGCGGCCGACGGCCCGGTAAGCGTACATCTGGCCGAGGCGAAGAAGCGCAAGAAGAAGAAGAAGAAGAAGACGGGCAAGTACATCTCCAGCTCGGCGCGCCGCAGCAGCGAGGACAATGCCGACATCGAGGACGA-TTTTACGCGCAC-GGTCAAGGAGGTGGACAAGCTGTTCGGCAACTTCCCGCGCGACTCGACCGCCGATCACCCTCACCACCACCACCATCATCATCCGCCGCATCACCATCACCATCATCAGGATGGTGGGCGGTGGTGGGCCGGGTGAAAGCTAAGGCGGGCGGAAGCCGGTGCTGTTACCGCAAAATCGTTGCTGAACGTGCAGCATAAAAATCTGAACCCGCAGTACGAGATGAAGCGCATGTTCGGGCAGCAAGGTCGTCGGCGATCAACAAAACAAGCGACGCAATGG]
[+] EMBL BM600496 [CGACCCACGCGTCCGGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCACCGTGTGTTTGGTTTCCTACGGGAGCTGCGCTTCCGAACCAATCGAAAGCAATTTCCGGATTTAGGGCAACTTTCCTCGCCCATTCCCCCTCCCCGTAGTGAGTGCAAAAAGTGTGCAGCGTGTCAGTCCGTGCTGCATCCCCGTCAGCATCGTAGTGTGCATTGCGTATCGTGGGCCCATCATCTCCCATCCCCCACGTTTCCACACATTTTTCGCTGTATTGTGCGACCGCGTGTTGCATGTTGACGACGGCAACATGTCCTACCGAATACTGCGCAAGCTGCAGGGGAACGAGCTGGAGATAAAGGAACAGATCGATGAGGTGTCGGACGGTGGCGATGCCGATTACGACACCAACAGCACCAGCAGCCAGAACCGCAACAACAGCAAGAAGCAGCTCAACATCAATCGATACGATCTGCTGAACCA ]
[+] EMBL BM598556 [ ccgAGCGTGTCAGTCCGTGCTGCATCCCCGTCAGCATCGTAGTGTGCATTGCGTATCGTGGGCCCATCATCTCCCATCCCCCACGTTTCCACACATTTTTCGCTGTATTGTGCGACCGCGTGTTGCATGTTGACGACGGCAACATGTCCTACCGAATACTGCGCAAGCTGCAGGGGAACGAGCTGGAGATAAAGGAACAGATCGATGAGGTGTCGGACGGTGGCGATGCCGATTACGACACCAACAGCACCAGCAGCCAGAACCGCAACAACAGCAAGAAGCAGCCCAACATCAATCGATACGATCTGCTGAATCAGCAACAGTCGCTGTCCGAGAGCGAGGTAAAGGAGGACGACAACGATGAGACGGAAAAGGATGCGGCCGACGGCCCGGTAAGCGTACATCTGGCCGAGGCGAAGAAGCGCAAGAAGAAGAAGAAGAAGAAGACGGGCAAGTACATCTCCAGCTCGGCGCGCCGCAGCAGCGAGGACAATGCCGACATCGAGGACGA TTTTACGCGCACGGGTCAAGGAGGTGGACAAGCTGTTCGGCAACTTCCCGCGCGACTCGACCGCCGATCAC ]
[+] EMBL BM619033 [ ccgATCCCCGTCAGCATCGTAGTGTGCATTGCGTATCGTGGGCCCATCATCCCCCATCCCCCACGTTTCCACACATTTTTCGCTGTATTGTGCGACCGCGTGTTGCATGTTGACGACGGCAACATGTCCTACCGAATACTGCGCAAGCTGCAGGGGAACGAGCTGGAGATAAAGGAACAGATCGATGAGGTGTCGGACGGTGGCGATGCCGATTACGACACCAACAGCACCAGCAGCCAGAACCGCAACAACAGCAAGAAGCAGCTCAACATCAATCGATACGATCTGCTGAACCAGCAACAGTCGCTGTCCGAGAGCGAGGTAAAGGAGGACGACAACGATGAGACGGAAAAGGATGCGGCCGACGGCCCGGTAAGCGTACATCTGGCCGAGGCGAAGAAGCGCAAGAAGAAGAAGAAGAAGAAGACGGGCAAGTACATCTCCAGCTCGGCGCGCCGCAGCAGCGAGGACAATGCCGACATCGAGGACGATTTTTACGCGCAC GGTCAAGGAGGTGG ]
[+] EMBL BM588717 [ ccgGTGCGACCGCGTGTTGCATGTTGACGACGGCAACATGTCCTACCGAATACTGCGCAAGCTGCAGGGGAACGAGCTGGAGATAAAGGAACAGATCGATGAGGTGTCGGACGGTGGCGATGCCGATTACGACACCAACAGCACCAGCAGCCAGAACCGCAACAACAGCAAGAAGCAGCTCAACATCAATCGATACGATCTGCTGAACCAGCAACAGTCGCTGTCCGAAAGCGAGGTAAAGGAGGACGACAACGATGAGACGGAAAAGGATGCGGCCGACGGCCCGGTAAGCGTACATCTGGCCGAGGCGAAGAAGCGCAAGAAGAAGAAGAAGAAGAAGACGGGCAAGTACATCTCCAGCTCGGCGCGCCGCAGCAGCGAGGACAATGCCGACATCGAGGACGA TTTTACGCGCAC GGTCAAGGAGGTGGACAAGCTGTTCGGCAACTTTCCGCGCGACTCGACCGCCGATCACCCTCACCACCACCACCATCATCATCCGCCGCATCACCATCACCATCATCAGGATGGTGGGCGGTGGTGGGCCGGGTGAAAGCTAAGGCGGGCGGAAGCCGGTGCTGTTACCGCAAAATCGTTGCTGAACGTGCAGCATAAAAATCTGAACCCGCAGTACGAGATGAAGCGCATGTTCGGGCAGCAAGGTCGTCGGCGATCAACAAAACAAGCGACGCAATGG]
consensusID : consensus_8176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 716 fasta sequence
[GGTTAAGTCAATTTCGGGAAGTGGAAAGGATTGTGC-AAAAAAAAAAGAAGTCATCTCCGAGCCTCTCCCGACCGCTAGTGCGCCTGTTTTCGGCCACACATC-GATCGCAAAGACGCATTATTTGTTGGTGCGTATTTGCGTTCACGGCAGCGACAGGTTTTTTTTATTATTGTCGGTTCGAATAAACCCACATACTCGCCCTTCGGTGTTGGTCAGCTTCCCTTTGCCAGTGCTCTGGCAGAAGAAGCTAGTGTGTGTGCGTGTATGGTGGCGGATGCAAAACAAATCGCCCAGCAGAGCGGCGCCGTGTTGTGATACGAACACGCGTAATTATTGAATCGTACATTTGTAATCGTAATCGCGACCCTTGTTCGTCGTATGTGTT-T-GTTGT-TGGTGGTGCTCTAGTGTGTACGTGTGGTACCCAAACAGCCG-CTGACGTCGGCATCATCTGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCACCGTGTGTTTGGTTTCCTA-C-GGGAGCTG-CGCTTCCGAACCAAATCGAAAGC-AATTT-CCGGATTTAGGGCAACTTTCCTCGC-CCATTCCCCCTCCCCGTAGTG-AGTG-CAAA-AAG-TGTGCAGCG-TGTCAGTCCGTGCTGCATCCCCG-TCAGCATCG-T-AGTGTGCANTTGCGTAT-CGTGGGCCCATCAT-CTCCCATCCCCCACGTTT--ACANAATTTCGGCNGTAATTGTGCGACCGC]
[+] EMBL AL933130 [GGTTAAGTCAATTTCGGGAAGTGGAAAGGATTGTGC AAAAAAAAAGAAGTCATCTCCGAGCCTCTCCCGACCGCTAGTGCGCCTGTTTTCCGCCACACATCAAATCGCAAAGACGCATTATTTGTTGGTGCGTATTTGCGTTCACGACAGCGACAGGTTTTTT TTATTGTCGGTTCGAATAAACCCACATACTCGCCCTTCGGTGTTGGTCAGCTTCCCTTTGCCAGTGCTCTGGCAGAAGAAGCTAGTGTGTGTGCGTGTATGGTGGCAGATGCAAAACAAATCGCCCAGCAGAGCGGCGCCGTGTTGTGATACGAACACGCGTAATTATTGAATCGTACATTTGTAATCGTAATCGCGACCCTTGTTCGTCGTATGTGTTATAGTTGTATGGTGGTGCTCTAGTGTGTACGTGTGGTACCCAAACAGCCGCCTGACGTCGGCATCATCTGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCA CGTGTGTNTGGTTTCCTANCGGGGAGCTGCCGCTTCCGAACCAAATCGAAAGCAAATTTCCCGGATTTAGGGCAACTTTCCTCGCNCCAT TCCCCGTAGTGAAGTGCCAAACAAGTTGTGCAGCGTTGTCAGTCCGTGCTGCATCCCCGTTCAG ATCGCTAAGTGTGCANTTGCGNATNNGTGGGCCCATCATACCCCAATACCCCA GTTT ACANAATTTCGGCNGTA ]
[+] EMBL BM591176 [ ccgCGGGAAGTGGAAAGGATTGTGCAAAAAAAAAAAGAAGTCATCTCCGAGCCTCTCCCGACCGCTAGTGCGCCTGTTTTCGGCCACACATC GATCGCAAAGACGCATTATTTGTTGGTGCGTATTTGCGTTCACGGCAGCGACAGGTTTTTTTTATTATTGTCGGTTCGAATAAACCCACATACTCGCCCTTCGGTGTTGGTCAGCTTCCCTTTGCCAGTGCTCTGGCAGAAGAAGCTAGTGTGTGTGCGTGTATGGTGGCGGATGCAAAACAAATCGCCCAGCAGAGCGGCGCCGTGTTGTGATACGAACACGCGTAATTATTGAATCGTACATTTGTAATCGTAATCGCGGCCCTTGTTCGTCGTATGTGTT T GTTGT TGGTGGTGCTCTAGTGTGTACGTGTGGTACCCAAACAGCCG CTGACGTCGGCATCATCTGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCACCGTGTGTTTGGTTTCCTA C GGGAGCTG CGCTTCCGAACC AATCGAAAGC AATTT CCGGATTTAGGGCAACTTTCCTCGC CCATTCCCCCTCCCCGTAGTG AGTG CAAA AAG TGTGCAGCG TGTCAGTCCGTGCTGCATCCCCG TCAGCATCG T AGTGTGCATTGGCGTAT CGTGGGCCCATCAT CTCCCATCCCCCACGTT ]
[+] EMBL AL692965 [ cccgagtAAGGA TGTGC AAAAAAAAAAGAA TCATCTCCGANCCTCTCCCGACCGCTAGTGCGCCTGTTTTCGGCCACACATC GATCGCAAAGACGCATTATTTGTTGGTGCGTATTTGCGTTCACGGCAGCGACAGGTTTTTTTTATTATTGTCGGTTCGAATAAACCCACATACTCGCCCTTCGGTGTTGGTCAGCTTCCCTTTGCCAGTGCTCTGGCAGAA AAGCTA TGTGTGTGCGTGTATGGTGGCGGATGCAAAACAAATCGCCCAGCAGAGCGGCGCCGTGTTGTGATACGAACACGCGTAATTATTGAATCGTACATTTGTAATCGTAATCGCG GCCTTGTTCGTCGTATGTG T T GTTGT NGGTGGTGCTCTAGTGTGTACGTGTGGTACCCAAACAGCCG CTGACGTCGGCATCATCTGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCACCGTGTGTTTGGTTTCCTA C GGGAGCTG CGCTTCCGAACCAA ]
[+] EMBL BX625343 [ TCTCCGAGCCTCTCCCGACCGCTAGTGCGCCTGTTTTCGGCCACACATC GATCGCAAAGACGCATTATTTGTTGGTGCGTATTTGCGTTCACGGCAGCGACAGGTTTTTTTTATTATTGTCGGTTCGAATAAACCCACATACTCGCCCTTCGGTGTTGGTCAGCTTCCCTTTGCCAGTGTTCTGGCAGAAGAAGCTAGTGTGTGTGCGTGTATGGTGGCGGATGCAAAACAAATCGCCCAGCAGAGCGGCGCCGTGTTGTGATACGAACACGCGTAATTATTGAATCGTACATTTGTAATCGTAATCGCGGCCCTTGTTCGTCGTATGTGTT T GTTGT TGGTGGTGCTCTAGTGTGTACGTGTGGTACCCAAACAGCCG CTGACGTCGGCATCATCTGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCACCGTGTGTTTGGTTTCCTA C GGGAGCTG CGCTTCCGAACC AATCGAAAGC AATTT CCGGATTTAGGGCAACTTTCCTCGC CCATTCCCCCTCCCCGTAGTG AGTG CAAA AAG TGTGCAGCG TGTCANTCCGTGCTGCATCCCCG TCAGCATCG T AGTGTGCA TTGCGTAT CGTGGGCCCATCAT CTCCCATCCCCCACGTTTCCACACATTTTTCNCTGT ATTGTGCGACCGC]
[+] EMBL BM617415 [ CCG GCCTCTCCCGACCGCTAGTGCGCCTGTTTTCCGCCACACATC GATCGCAAAGACGCATTATTTGTTGGTGCGTATTTGCGTTCACGACAGCGACAGGGTTTTTTT TAATTGTCGGTTCGAATAAACCCACATACTCGCCCTTCGGTGTTGGTCAGCTTCCCTTTGCCAGTGCTCTGGCAGAAGAAGCTAGTGTGTGTGCGTGTATGGTGGCAGATGCAAAACAAATCGCCCAGCAGAGCGGCGCCGTGTTGTGATACGAACACGCGTAATTATTAAATCGTACATTTGTAATCGTAATCGCGACCCTTGTTCGTCGTATGTGTT T GTTGT TGGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8176#0 CGACCCACGCGTCCGGGGCAGGCGAGTGAAAGCGCAACAAAGCGCCACCGTGTGTTTGGT 60
consensus_8176#1 ------------------------------------------------GGTTAAGTCAAT 12
** * *
consensus_8176#0 TTCCTACGGGAGCTGCGCTTCCG--AACCAATCGAAAGCAATTTCCGGATTTAGGGCAAC 118
consensus_8176#1 TTCGGGAAGTGGAAAGGATTGTGCAAAAAAAAAAGAAGTCATCTCCGAGCCTCTCCCGAC 72
*** * * * ** * ** ** *** ** **** * * **
consensus_8176#0 TTTCCTCGCCCAT-TCCCCCTCCCCGTAGTGAGTGCAAAAAGTGTGCAGCGTGTCAGTCC 177
consensus_8176#1 CGCTAGTGCGCCTGTTTTCGGCCACACATCGATCGCAAAGA-CGCATTATTTGTTGGTGC 131
** * * * * ** * * ** ***** * * *** ** *
consensus_8176#0 GTGCT-GCATCCCCGTCAGCATCGTAGTGTGCATTGCGTATCGTGGGCCCATCATCTCCC 236
consensus_8176#1 GTATTTGCGTTCACGGCAGCGACA-GGTTTTTTTTAT-TATTGTCGGTTCGA-----ATA 184
** * ** * * ** **** * ** * ** *** ** ** *
consensus_8176#0 ATCCCCCACGTTTCCACACATTTTTCGCTGTATTGTGCGACCGCGTGTTGCATGTTGACG 296
consensus_8176#1 AACCCACATACT------CGCCCTTCG--GTGTTGGTCAGCTTCCCTTTGCCAGT--GCT 234
* *** ** * * **** ** *** * * * **** ** *
consensus_8176#0 ACGGCAACATGTCCTACCGAATACTGCGCAAGCTGCAGGGGAACGAGCTGGAGATAAAGG 356
consensus_8176#1 CTGGCAGAAGAAGCTAGTGTGTG-TGCGTGTA-TGGTGGCGGATGCAAAACAAATCGCCC 292
**** * *** * * **** ** ** * * * * **
consensus_8176#0 AACAGATCGATGAGGTGTCGGACGGTGGCGATGC-CGATTACGACACCAACAGCACCAGC 415
consensus_8176#1 AGCAGAGCGGCGCCGTGTTGTGATACGAACACGCGTAATTATTGAATCG--TACATTTGT 350
* **** ** * **** * * * ** **** * * ** *
consensus_8176#0 AGCCAGAACCGCAACAACAGCAAGAAGCAGCTCAACATCAATCGATACGATCTGCTGAAC 475
consensus_8176#1 AATCGTAATCGCGACCCTTGTTCGTCGTATGTGTTTGTTGTTGGTGGTGCTCTAGTGTGT 410
* * ** *** ** * * * * * * * * * *** **
consensus_8176#0 CAGCAA------CAGTCGCTGTCCGAGAGCGAGGTAAAGGAGGACGACAACGATGAGACG 529
consensus_8176#1 ACGTGTGGTACCCAAACAGCCGCTGACGTCGGCATCATCTGGGCAGGCGA-GTGAAAGCG 469
* ** * * ** ** * * ** * * * * * **
consensus_8176#0 GAAAAGGATGCGGCCGACGGCCCGGTAAGCGTACATCTGGCCGAGGCGAAGAAGCGCAAG 589
consensus_8176#1 CAACAAAGCGCCACCGTGTGTTTGGTTT-CCTACGGG-AGCTGCGCTTCCGAACCAAATC 527
** * ** *** * *** * *** ** * * *** * *
consensus_8176#0 AAGAAGAAGAAGAAGAAGACGGGCAAGTA-CATCTCCAGCTCGGCGCGCCGCAGCAGCGA 648
consensus_8176#1 GAAAGCAATTTCCGGATTTAGGGCAACTTTCCTCGCCCATTC--CCCCTCCCCGTAGTGA 585
* * ** ** ****** * * ** ** ** * * * * * ** **
consensus_8176#0 GGACAATGCCGACATCGAGGACGATTTTACGCGCACGGTCAAGGAGGTGGACAAGCTGTT 708
consensus_8176#1 GTGCAAAA--AGTGTGCAGCGTGTCAGTCCGTGCTGCATCCCCGTCAGCATCGTAGTGTG 643
* *** * ** * * ** ** ** * * ***
consensus_8176#0 CGGCAACTTCCCGCGCGACTCGACCGCCGATCACCCTCACCACCACCACCATCATCATCC 768
consensus_8176#1 CANTTGCGTATCGTGGGCCC--ATCATCTCCCATCCCCCACGTTTACANAATT-TCGGCN 700
* * * ** * * * * * * ** ** * * ** ** ** *
consensus_8176#0 GCCGCATCACCATCACCATCATCAGGATGGTGGGCGGTGGTGGGCCGGGTGAAAGCTAAG 828
consensus_8176#1 GTAATTGTGCGACCGC-------------------------------------------- 716
* * * * *
consensus_8176#0 GCGGGCGGAAGCCGGTGCTGTTACCGCAAAATCGTTGCTGAACGTGCAGCATAAAAATCT 888
consensus_8176#1 ------------------------------------------------------------
consensus_8176#0 GAACCCGCAGTACGAGATGAAGCGCATGTTCGGGCAGCAAGGTCGTCGGCGATCAACAAA 948
consensus_8176#1 ------------------------------------------------------------
consensus_8176#0 ACAAGCGACGCAATGG 964
consensus_8176#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||