These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1400 fasta sequence [CCGCCCACGCGTCCGATCCTACAAACCTGCTAAACACTTAAGTTAAACTTAGTTAACCTTTAACGTAGTGCTCTAAGCTATCGTATAGTATTTTGAGGACAAAGGATCAAGTCAAATTTGCGTAGTAGTGAAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGTTGTACTATAGCGGAAAACTGCACACAAAAGGTGCCTCAAAGAGAAACTATAAAAGAGAAACTAGCGAAGATAAAGGGGCGAATGCGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAACAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATGATAAGAATCCGTTCCGTTGTTTTTTTTT----TTATTT----TTTTAATAAAACAACAAACACAAACAGCTGCTCCGAAGTACGGTGCTATATAGAGACAAACATTTACACAATTTTTATCC--CACACACACACACACACAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA-------CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG-TTTGTTTTTTTCTTATCGT-TTT-TGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA-TGAA-AAGGGTTTAACA-A-AAAACCCTCCAATCGGTACATTAA-AAAAAAACTATTTAAATGCAGAAGTATTTGC-TAGAGCACCATA-TTGATCGGTAGGTAAAC-AGT---AAAAGCG-ATAAAACAGCAAGAANAGAACCACAGAGCAAGGCACAGGCANGGTATAAATANACAGTATTGAAAAACATACAAAACAAGCACAAGCTTTTGATCTGGGAGCAGCACNCACCCCCACCAANACAACTCAAAATCAACACCTTACACACTAGTACTAATCTAAACATATTGAGCTATGTCGGTATCATTANTGAATGTNCGNATAGGAATTGGGTGAACACTTAACCTAGNATACTGTGCAAANATTAACCGACACAACTACACAACGCAAAAACTAAAACCCGGTGGTGGCAACCGGTAGCAGGTTGACAGGCACCGAANTNTACCGCCACACANACGCCAGGGAAACACAA] [+] EMBL BM654332 [CCGCCCACGCGTCCGATCCTACAAACCTGCTAAACACTTAAGTTAAACTTAGTTAACCTTTAACGTAGTGCTCTAAGCTATCGTATAGTATTTTGAGGACAAAGGATCAAGTCAAATTTGCGTAGTAGTGAAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGTTGTACTATAGCGGAAAACTGCACACAAAAGGTGCCTCAAAGAGAAACTATAAAAGAGAAACTAGCGAAGATAAAGGGGCGAATGCGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAGCAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTATAATGATAAGAATCCGTT ] [+] EMBL BM643912 [ ccGAGGGAGAAAGAGAGAGAGAGACGGTTGTACTATAGAGGAAAACTGCACACAAAAGGTGCAACAAAGAGAAACTAGAAAAGAGAAACTAGCGAAGAGAAAGGGGCGAATGTGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAACAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATGATAAGAATCCGTTCCGTTGTTTTTTTTTATTCTTATTTTTACTTTTAATAAAACAACAAACACAAACAGCTGCTCCGAAGTACGGTGCTATATAGAGACAAACATTTACACAATTTTTATCC CACACACACACACACACAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGCCAAAAAAGGGTTAAAACAACTTGCAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGACAAGCAAACGTAGCCCTTAAGA AACCAAACAAAAAAACAACAACAACAACCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTGTTTTTTTTTTTTCTTATCG ] [+] EMBL BX624791 [ AGAAAGAACCAAACCAAACAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATGATAAGAATCCGTTCCGTTGTTTTTTTTT TTGTTT TTTTAATAAAACAACAAACACAAACAGCTGCTCCGAAGTACGGTGCTATATAGAGACAAACATTTATACAATTTTTATCCCACACACACACACACACACAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG TTTGTTTTTTTCTTATCGT TTT TGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA TGAA AAGGGTTTAACA A AAAACCCTCCAATCGGTACATTAA AAAAAAACTATTTAAATGCAGAAGTATTTGC TAGAG A CATA TTGATCGGTAGGTAAAC AGT AAAAGCG ATAA ] [+] EMBL BM646526 [ ccgCAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG TTTGTTTTTTTCTTATCGT TTT TGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA TGAA AAGGGTTTAACA A AAAACCCTCCAATCGGTACATTAA AAAAAAACTATTTAAA ] [+] EMBL AL692842 [ cccganngTTTAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCG TTTG TTGTTTGAAATGTATTG TG TTTTTTCTTATCGTATTTNTGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATTGAACAAGGGTTTAACANACAAAACCCTCCAATCGGTACATTAACAAAAAAACTATTTAAATGCAGAAGTATTTGCGTAGAGCACCATATTTGATCGGTAGGTAAACNAGTCANAACAGCGCATAAAACAGCAAGAANAGAACCACAGAGCAAGGCACAGGCANGGTATAAATANACAGTATTGAAAAACATACAAAACAAGCACAAGCTTTTGATCTGGGAGCAGCACNCACCCCCACCAANACAACTCAAAATCAACACCTTACACACTAGTACTAATCTAAACATATTGAGCTATGTCGGTATCATTANTGAATGTNCGNATAGGAATTGGGTGAACACTTAACCTAGNATACTGTGCAAANATTAACCGACACAACTACACAACGCAAAAACTAAAACCCGGTGGTGGCAACCGGTAGCAGGTTGACAGGCACCGAANTNTACCGCCACACANACGCCAGGGAAACACAA] [+] EMBL BX619018 [ CATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATA AAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG TTTGTTTTTTTCTTATCGT TTT TGTCTTCGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA TGAA AAGGGTTTAACA A AAAACCCTCCAATCGGTACATT A AAAAAAACTATTTAAATGCAGAAGTATTTGC TAGAGacat ] consensusID : consensus_8179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 689 fasta sequence [CCGCGACCAGTGAACACGGACAGTCGCTGCGTATCGAGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAACCTGTGTGTCTA--TGTCT--GT--ATGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAACAAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAATCTGCTCCCCAAACATCACACAGGTGCAGTGCAGTGTGAAAAGAAGTGTTTCCCTTTACCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTCTCTGTTCGGGTGTGCTGTTCTGCATCTTCCAGCGTCTTCCAGCTTCTAACAAGCGACGAACCGACCGCGCCAAACGATGAATCTTCGCGGCTGGGGTGCGGTGCAGCTTGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTTTAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTGCTAGAGACATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAAGAACCACAGAGCAAGGAAGGAAGGGATA] [+] EMBL BM637647 [CCGCGACCAGTGAACACGGACAGTCGCTGCGTATCGAGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAACCTGTGTGTCTA TGTCT GT ATGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAACAAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAATCTGCTCCCCAAACATCACACAGGTGCAGTGCAGTGTGAAAAGAAGTGTTTCCCTTTACCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTCTCTGTTCGGGTGTGCTGTT ] [+] EMBL BM649182 [ ACACGGACAGTCGCTGCGTATCGTGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAGCCTGTGTGTTTACGTGTCTACGTGGCTGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAACAAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAATCTGCTCCCCAAACATCACACAGGTGCAGTGCAGTGTGAAAAGAAGTGTTTCCCTTTACCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTCTCTGTTCGGTTGTGCTGTTCTGCATCTTCCAGCGTCTTCCAGCTTCTAACAAGCGACGAACCGACCGCGCCAAACGATGAATCTTCGCGGCTGGGGTGCGGTGCAGCTTGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTTTAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTGCTAGAGACATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAAGAACCACAGA ] [+] EMBL BX609904 [ GCGTATGAAAAGGGTGAAACAAAAAACCCTCCAACCGGTACATGAAAAAAAAACTATTTAAATGCAGAAGTATTTGCTAGAGACATATGGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAAGAACCACAGAGCAAGGAAGGAAGGGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8179#0 CCGCCCACGCGTCCGATCCTACAAACCTGCTAAACACTTAAGTTAAACTTAGTTAACCTT 60 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 TAACGTAGTGCTCTAAGCTATCGTATAGTATTTTGAGGACAAAGGATCAAGTCAAATTTG 120 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 CGTAGTAGTGAAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGTTGTACTAT 180 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 AGCGGAAAACTGCACACAAAAGGTGCCTCAAAGAGAAACTATAAAAGAGAAACTAGCGAA 240 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 GATAAAGGGGCGAATGCGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAACAG 300 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 AAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATG 360 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 ATAAGAATCCGTTCCGTTGTTTTTTTTTTTATTTTTTTAATAAAACAACAAACACAAACA 420 consensus_8179#1 --------------------------------------CCGCGACCAGTGAACACGGACA 22 * ** ***** *** consensus_8179#0 GCTGCTCCGAAGTACGGTGCTATATAGAG--ACAAACATTTACACAATTTTTATCCCACA 478 consensus_8179#1 GTCGCTGCGTATCGAGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAA 82 * *** ** * * * * * * * * * ** **** * * * consensus_8179#0 CACACACACACACAGACAT-CAAGTTCATGTAC-CAAATGCAATAAACACAAGATAAAAC 536 consensus_8179#1 CCTGTGTGTCTATGTCTGTATGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAAC 142 * * * ** * ** ** * * *** consensus_8179#0 AATGGATAAAATTTAAAA------TGCATTATATGCTTATAGAAAATTACTAAAACCGTA 590 consensus_8179#1 AAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAA 202 ** * * *** ** *** * ** **** * **** * ** ** * * consensus_8179#0 TTATTCGTCAAAAAAGGGTTAAAACAAAACTTGCAA-ATATGAAGATACAAAAACATACA 649 consensus_8179#1 TCTGCTCCCCAAACATCACACAGGTGCAG--TGCAGTGTGAAAAGAAGTGTTTCCCTTTA 260 * * *** * * * **** * **** * * * consensus_8179#0 TGTAGCAAATCATATACCTTTTGTGT-CGTAAGGGGCAAGTAGACGTAGCCATCCCCATA 708 consensus_8179#1 CCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTC-TC 319 * * *** ***** ** * * ** * *** * * * consensus_8179#0 AGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAAT 768 consensus_8179#1 TGTTCGGGTGTGCTGTTCTGCATCTTCCAGCGTCTTCCAGCTTCTAACAAGCGACGAACC 379 * * ** * **** * *** ** * * ** * *** consensus_8179#0 GTTCGTTTTGTTTGTTTGAAATGTATTGTTTGTTTTTTTCTTATCGTTTTTGTCTACGGG 828 consensus_8179#1 GACCGCGCCAAACGATGAATCTTCGCGGCTGGGGTG--------CGGTGCAGCTT----G 427 * ** * * * * * * * * ** * * * * consensus_8179#0 CACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCG 888 consensus_8179#1 CACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCG 487 ************************************************************ consensus_8179#0 CGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTT 948 consensus_8179#1 CGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTT 547 ************************************************************ consensus_8179#0 TAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTG 1008 consensus_8179#1 TAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTG 607 ************************************************************ consensus_8179#0 CTAGAGCACCATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAANAGAA 1068 consensus_8179#1 CTAGAGA--CATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAA-GAA 664 ****** ********************************************** *** consensus_8179#0 CCACAGAGCAAGGCACAGGCANGGTATAAATANACAGTATTGAAAAACATACAAAACAAG 1128 consensus_8179#1 CCACAGAGCAAGG---AAGGAAGGGATA-------------------------------- 689 ************* * * * ** *** consensus_8179#0 CACAAGCTTTTGATCTGGGAGCAGCACNCACCCCCACCAANACAACTCAAAATCAACACC 1188 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 TTACACACTAGTACTAATCTAAACATATTGAGCTATGTCGGTATCATTANTGAATGTNCG 1248 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 NATAGGAATTGGGTGAACACTTAACCTAGNATACTGTGCAAANATTAACCGACACAACTA 1308 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 CACAACGCAAAAACTAAAACCCGGTGGTGGCAACCGGTAGCAGGTTGACAGGCACCGAAN 1368 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 TNTACCGCCACACANACGCCAGGGAAACACAA 1400 consensus_8179#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||