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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 970 fasta sequence
[AAAGGAAAAAAAATACAAAACTACGCACAGCCACTTGAAAGCGGCA-CATTTTCCCCAAACGACGAGCGATTGTGCACTTTCAAGATGATTGACTT-TGT-CGGAATAGTGTTTGCGCTATTG-GTCGCCATCGGTGGTATC-GTGGGCTACAAGCGTGCCGGCTCTACCGCTT-CCCTCTATG-CCGGGCTCG-TGTTCG-GAGTGGCCATCG-GAGCGGGCGCATGGTGCAATTCGTTACAGCAACCGTTCCCGTACGTACAGTT-CGTAGTCCTGTT-TCTGCTCA-TCGTCGTCATG-ATGATACGGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCGTCCTGGTCTGGAC-GATCTTCATGTACGGAGACA-CTTCATCTCGGGGTCGAACGAGAAGCCAATACCGGT-AAATGGGACGATCAGCGTTGCAACTGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGC-TGTGAAGCATCATTCCAGCTGGCATCTGTAGGGAAGGATTGTTGGAATCAAAATGAGACCCCAGTGCATTTGCTGTAGAGTAGTATCTTCTAAAATCATTCATTTTCCTACAAAACATACTTCTCTGATTTGGGCCTCAACGAAAGTCAGGATAATGCGCCGTGGAGCCGTTTATTGTTATGCACATATTACGCCATTAAGGCGACACACGGTCTAGACTGTAATTAATGGGAGCCAAATTCTTGAAAACGGTACTATCGGAATCTCAGGGAACTGATTTTTGTATTCGTGTACGAACAATTGTATATTATATTGCCAGCAAAAGTTAAAAGTGTTAGTAGACAGACGGTTATTAGCGCCACGAGTGTGATTTTGCAGTTGACTGCTGAGCAAAGCGCGATGATTTTGGTGCAGTAAAGGCACCGTTTTGATTGAATTATTCTGTAATCGTACAAATAAACTGAAATAAATGTTTAATATCAAAAAAA]
[+] EMBL CNS092GW [AAAGGAAAAAAAATACAAAACTACGCACAGC CTTGAAAGCGGCA CATTTTCCCCAAACGACGAGCGATTGTGCACTTTCAAGATGATTGACTT TGT CGGAATAGTGTTTGCGCTATTG GTCGCCATCGGTGGTATC GTGGGCTACAAGCGTGCCGGCTCTACCGCTT CCCTCTATG CCGGGCTCG TGTTCG GAGTGGCCATCG GAGCGGGCGCATGGTGCAATTCGTTACAGCAACCGTTCCCGTACGTACAGTT CGTAGTTCTGTT TCTGCTCA TCGTCGTCATG ATGATACGGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCGTCCTGGTCTGGAC GATCTTCATGTACGGCGACA CTTCATCTCGGGGTCGAACGAGAAGCCAATACCGGT AAATGGGACGATCAGCGTTGCAACTGATGGCCGTAAGCTGGAGTGACCGAGAGAGCGC TGTGAAGCATCATTCCAGCTGGCATCTGTAGGGAAGGATTGTTGGAATCAAAATGAGACCCCAGTGCATTTGCTGTAGAGTAGTATCTTCTAAAATCATTCATTTTCCTACAAAACATACTTCTCTTATTTGGGCCTCAACGAAAGTGAGGATAATGCGCCGTGGAGCCGTTTATTGTTATGCACATATTGCGCCATTAAGGCGACAAACGTTCTAGACTGTAATTAATGGGAGCCAAATTCTTGAAAACGGTACAATCGGAATCTCAGGGAACTGATTTTTGTATTCGTGTACGAACAATTGTATATTATATTGCCAGCAAAAGTTAAAAGTGTTAGTAGACAGACGGTTATTAGCGCCACGAGTGTGATTTTGCAGTTGACTGCTGAG ]
[+] EMBL BM640280 [ aggAAAAAATACAAAACTACGCACAGCCACTTG AGCGGCAGCATTTTCCCCAAACGACGAGCGATTGTGCACTTTCAAGATGATTGACTT TGT CGGAATAGTGTTTGCGCTATTG GTCGCCATCGGTGGTATC GTGGGCTACAAGCGTGCCGGCTCTACCGCTT CCCTCTATG CCGGGCTCG TGTTCG GAGTGGCCATCG GAGCGGGCGCATGGTGCAATTCGTTACAGCAACCGTTCCCGTACGTACAGTT CGTAGTCCTGTT TCTGCTCA TCGTCGTCATG ATGATACGGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCGTTCTGGTCTGGAC GATCTTTATGTACGGGGACAGCTTCATCTCGGGGTCGAACGAGAAGCCAATACCGGT AAATGGGACGATCAGCGTTGCAACCGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGC TGTGAAGAATCATTCCAGCTGGCATCTGTAGGGAAGGATTGTTGGAATCAAAATGAGACCCCAGTCCATTTGCTGCAGAGTAGTATCTTCTAAAATCATTCATTTTCCTACAAAACGTACTTCT ]
[+] EMBL CNS09G28 [ CTACGCACAGCCACTTGAAAGCGGCA CATTTTCCCCAAACGACGAGCGATTGTGCACTTTCAAGATGATTGACTT TGT CGGAATAGTGTTTGCGCTATTG GTCGCCATCGGTGGTATC GTGGGCTACAAGCGTGCCGGCTCTACCGCTT CCCTCTATG CCGGGCTCG TGTTCG GAGTGGCCATCG GAGCGGGCGCATGGTGCAATTCGTTACAGCAACCGTTCCCGTACGTACAGTT CGTAGTCCTGTT TCTGCTCA TCGTCGTCATG ATGATACGGTTCTACAAAACGAGAGCATTTATGCCACCGGGGCTGATACTGTTGCTGTCGCTGTGCGTCCTGGTCTGGAC GATCTTCATGTACGGAGACAGCTTCATCTCGGGGTCGAACGAGAAGCCAATACCGGT AAATGGGACGATCAGCGTTGCAACTGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGC TGTGAAGCATCATTCCAGCTGGCATCTGTAGGGAAGGATTGTTGGAATCAAAATGAGACCCCAGTGCATTTGCTGTAGAGTAGTATCTTCTAAAATCATTCATTTATCTACAAAGCATACTATTCTGATTTGGGCCTCAACGAAAGTCAGGATAATGCGCCGTGGAGCCGTTTATTGTTATGCACATATTACGCCATTAAGGCGACACACGGTCTAGACTTTAATTAATGGGAGCCAAATTCTTGAAAACGGTACT ]
[+] EMBL AL692350 [ aggttanCGGCAGCATTTT CCCAAACGACGAGCGATTGTGCACTTTCAAGATGATTGACTTCTGTACGGAATAGTGTTTGCGCTATTGNGTCGCCATCGGTGGTATCANTGGGCTAGAAGCGTG CGGCTCTAGCGGTTACCCTCTATGACCGGGCTCGCTGTTCGANAGTGGCCATCGNTAGCGGGCGCATGGTGCAATTCGTNACAGAAANCGTTCCCGTACGTACAGTTACGTAGTCCTGTTNTCTGCTCATTCGTCGTCATGCATGATACGGTTCTAGAAAACGAGAGCATTTATGCCACCGGGGCTGATACTGTTGCTGTCGCTGTGCGTCCTGGTCTGGACTGATCTTCATGTACGGAGACA GTTCATCTCGGGGTCGAACGAGAAGCCAATACCGGTCAAATGGGACGATCAGTGTTGCAACTGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGCGTGTGAAGCATCATTCCAGCTGGCATCTGTAGGGAAGGATTGTTGGAATCAAAATGAGACCCCAGTGCATTTGCTGT ]
[-] EMBL CNS092GX [ tc CCGGGCTCG TGTTCG GAGTGGCCATCG GAGGGGGCGCATGGTGCAATTCGTTACCGCAACCGTTCCCGTACGTACAGTT CGTAGTTCTGTT TCTGCTCA TCGTCGTCATG ATGATACGGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGAAACTGTTGGTGTCGCTGTGCGTCCT ]
[-] EMBL CNS09G29 [ GT AAATGGGACGATCAGCGTTGCAACTGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGC TGTGAAGCATCATTCCAGCTGGCATCTGTAGGGAAGGATTGTTGGAATCAAAATGAGACCCCAGTGCATTTGCTGTAGAGTAGTATCTTCTAAAATCATTCATTTATCTACAAAGCATACTATTCTGATTTGGGCCTCAACGAAAGTCAGGATAATGCGCCGTGGAGCCGTTTATTGTTATGCACATATTACGCCATTAAGGCGACACACGGTCTAGACTGTAATTAATGGGAGCCAAATTCTTGAAAACGGTACTATCGGAATCTCAGGGAACTGATTTTTGTATTAGTGTACGAACAATTGTATATTATATTGCCAACAAAAGTTAAAAGTGTTAGTAGACAGACGGTTATTAGCGCCACGAGTCTAATTTTGCAGTTGACTGCTGAGCAAAGCGCGATGATTTTGGTGCAGTAAAGGCACCGTTTTGATTGAATTATTCTGTAATCGTACAAATAAACTGAAATAAATGTTTAATATCAAAAAAA]
consensusID : consensus_8188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 583 fasta sequence
[GCAGAATCCCGCACGAGNGCAAAACTACGCACAGCCACTTGAGCGGCAGCATTTTCCCCAAACGACGAGC--GATTGTGCACTTTCAAGATGATTGAC-TTTGTCGGAATAGTGTTTGCGCTATTGGTCGCCATCGGTGGTATCGTGGGCTACAAGCGTGCCGGCTCTACCGCTTCCCTCTATGCCGGGCTCGTGTTCGGAGTGGCCATCGGAGCGGGCGCATGGTGCAATTCGTTACAGCAACCGTTCCCGTACGTACAGTTCGTAGTCCTGTTTCTGCTCATCGTCGTCATGATGATACGGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCGTTCTGGTCTGGACGATCTTATATGTACGGGGACAGCGTTCATCTCGGGGTCGAACGAGAAGGCCAATACCGGTAACATGGGACGATCA-GCGTTGCGAAGCCGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGCTGTGAAGAAGTCATTCCAGCTGGCATCTGTACAGGGAAGGATTGTANGGGAATCAAACATGAGAACCCCAAGGTCCATTTNGCTGCAGNNN]
[+] EMBL BX468229 [GCAGAATCCCGCACGAGNGCAAAACTACGCACAGCCACTTGAGCGGCAGCATTTTCCCCAAACGACGAGC GATTGTGCACTTTCAAGATGATTGAC TTTGTCGGAATAGTGTTTGCGCTATTGGTCGCCATCGGTGGTATCGTGGGCTACAAGCGTGCCGGCTCTACCGCTTCCCTCTATGCCGGGCTCGTGTTCGGAGTGGCCATCGGAGCGGGCGCATGGTGCAATTCGTTACAGCAACCGTTCCCGTACGTACAGTTCGTAGTCCTGTTTCTGCTCATCGTCGTCATGATGATACGGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCGTTCTGGTCTGGACGATCTTATATGTACGGGGACAGCGTTCATCTCGGGGTCGAACGAGAAGGCCAATACCGGTAACATGGGACGATCA GCGTTGCGAAGCCGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGCTGTGAAGAAGTCATTCCAGCTGGCATCTGTACAGGGAAGGATTGTANGGGAATCAAACATGAGAACCCCAAGGTCCATTTNGCTGCAGNNN]
[+] EMBL BX619965 [ cnatcgGCACGA NGCAAAACTACGCACAGCCACTTGAGCGGCAGCATTTTCCCCAAACGACGAGC GATTGTGCACTTTCAAGATGATTGAC TTTGTCGGAATAGTGTTTGCGCTATTGGTCGCCATCGGTGGTATCGTGGGCTACAAGCGTGCCGGCTCTACCGCTTCCCTCTATGCCGGGCTCGTGTTCGGAGTGGCCATCGGAGCGGGCGCATGGTGCAATTCGTTACAGCAACCGTTCCCGTACGTACAGTTCGTAGTCCTGTTTCTGCTCATCGTCGTCATGATGATACGGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCGTNCTGGTCTGGACGATCTT TATGTACGGGGACAGCTTTCATCTCGGGGTCGAACGAGAAGCCNAATACCGGTAA ATGGGACGATCAGGCGTTGC AA CCGATGGCCGTAAGCTGGAGTGACCGAGAGCGCGCTGT ]
[+] EMBL BX469315 [ aatcgngcACGAGGTGCTNGATTGTGCACTTTCAAGATGATNGACTTTTGTCGGAATAGTGTTTGCGCTATTGGTCGCCATCGGTGGTATCGTGGGCTACAAGCGTGCCGGCTCTACCGNTTCCCTCTATGCCGGGCTCGTGTTCGGAGTGGCCATCGGAGCGGGCGCATG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8188#0 ----AAAGGAAAAAAAATACAAAACTACGCACAGCCACTTGAAAGCGGCA-CATTTTCCC 55
consensus_8188#1 GCAGAATCCCGCACGAGNGCAAAACTACGCACAGCCACTTG--AGCGGCAGCATTTTCCC 58
** * * ********************** ******* *********
consensus_8188#0 CAAACGACGAGCGATTGTGCACTTTCAAGATGATTGACTTTGTCGGAATAGTGTTTGCGC 115
consensus_8188#1 CAAACGACGAGCGATTGTGCACTTTCAAGATGATTGACTTTGTCGGAATAGTGTTTGCGC 118
************************************************************
consensus_8188#0 TATTGGTCGCCATCGGTGGTATCGTGGGCTACAAGCGTGCCGGCTCTACCGCTTCCCTCT 175
consensus_8188#1 TATTGGTCGCCATCGGTGGTATCGTGGGCTACAAGCGTGCCGGCTCTACCGCTTCCCTCT 178
************************************************************
consensus_8188#0 ATGCCGGGCTCGTGTTCGGAGTGGCCATCGGAGCGGGCGCATGGTGCAATTCGTTACAGC 235
consensus_8188#1 ATGCCGGGCTCGTGTTCGGAGTGGCCATCGGAGCGGGCGCATGGTGCAATTCGTTACAGC 238
************************************************************
consensus_8188#0 AACCGTTCCCGTACGTACAGTTCGTAGTCCTGTTTCTGCTCATCGTCGTCATGATGATAC 295
consensus_8188#1 AACCGTTCCCGTACGTACAGTTCGTAGTCCTGTTTCTGCTCATCGTCGTCATGATGATAC 298
************************************************************
consensus_8188#0 GGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCG 355
consensus_8188#1 GGTTCTACAAAACGAGAGCATTTATGCCGTCGGGGCTGATACTGTTGCTGTCGCTGTGCG 358
************************************************************
consensus_8188#0 TCCTGGTCTGGACGATCTT-CATGTACGGAGACAC--TTCATCTCGGGGTCGAACGAGAA 412
consensus_8188#1 TTCTGGTCTGGACGATCTTATATGTACGGGGACAGCGTTCATCTCGGGGTCGAACGAGAA 418
* ***************** ******** **** ***********************
consensus_8188#0 G-CCAATACCGGTAA-ATGGGACGATCAGCGTTGCAA--CTGATGGCCGTAAGCTGGAGT 468
consensus_8188#1 GGCCAATACCGGTAACATGGGACGATCAGCGTTGCGAAGCCGATGGCCGTAAGCTGGAGT 478
* ************* ******************* * * *******************
consensus_8188#0 GACCGAGAGCGCGCTGTGAAGCA-TCATTCCAGCTGGCATCTGTA--GGGAAGGATTGTT 525
consensus_8188#1 GACCGAGAGCGCGCTGTGAAGAAGTCATTCCAGCTGGCATCTGTACAGGGAAGGATTGTA 538
********************* * ********************* ************
consensus_8188#0 GG--AATCAAA-ATGAGACCCC---AGTGCATTTG-CTGTAGAGTAGTATCTTCTAAAAT 578
consensus_8188#1 NGGGAATCAAACATGAGAACCCCAAGGTCCATTTNGCTGCAGNNN--------------- 583
* ******* ****** *** ** ***** *** **
consensus_8188#0 CATTCATTTTCCTACAAAACATACTTCTCTGATTTGGGCCTCAACGAAAGTCAGGATAAT 638
consensus_8188#1 ------------------------------------------------------------
consensus_8188#0 GCGCCGTGGAGCCGTTTATTGTTATGCACATATTACGCCATTAAGGCGACACACGGTCTA 698
consensus_8188#1 ------------------------------------------------------------
consensus_8188#0 GACTGTAATTAATGGGAGCCAAATTCTTGAAAACGGTACTATCGGAATCTCAGGGAACTG 758
consensus_8188#1 ------------------------------------------------------------
consensus_8188#0 ATTTTTGTATTCGTGTACGAACAATTGTATATTATATTGCCAGCAAAAGTTAAAAGTGTT 818
consensus_8188#1 ------------------------------------------------------------
consensus_8188#0 AGTAGACAGACGGTTATTAGCGCCACGAGTGTGATTTTGCAGTTGACTGCTGAGCAAAGC 878
consensus_8188#1 ------------------------------------------------------------
consensus_8188#0 GCGATGATTTTGGTGCAGTAAAGGCACCGTTTTGATTGAATTATTCTGTAATCGTACAAA 938
consensus_8188#1 ------------------------------------------------------------
consensus_8188#0 TAAACTGAAATAAATGTTTAATATCAAAAAAA 970
consensus_8188#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||