|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1273 fasta sequence
[CCGCCCACGCGTCCGTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGTCGATTCGCTGACGTGTTTGGCGAGCGATCGGGCATTTTTCGGAAGATTGCTGTACTCCAAAGCATTCTGCGCCGGATACAAAAATGGGACTGGAGTGTGCAATGGAGACAGTGGGGGTGGAATGTTTTTCCAGTTTCAAAACCGGTGGTATCTGAAGGGCGTGGTTTCGTTTAGCAATACTATTGATGCTACCGGAGTGTGCAATCTAAAACAATACATCGGGTTTACGGACGCTTCGCAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTGGGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGGACGGAACGAGCATATATACGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCGCCACCCGTTCGTTGATTCCGAGTACGTCCCCCTGTAACGGAGTCTTGCTGAATCGAAACTACGTTCTCACGACCAATTGTGTCGATTTACAGGGATGAAATCAGTGTGACACTAGGCGATTACGATACGAGCAAGACAAAGGACTGCGGCACCATAGACGGACGAGAGCAATGTGTATCCGGCGTGCAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTGACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAGAACCATTTGCGCTCGCAATATAAACGATCCTTCCCGATCGCCGCAATGCAATGATTATCAGCCAGGATCGGCGATATAGGCCATAGAGAAGAAATCTAACCGATACTTGCTCTACGGGTTGCAGACGGGCATTAGCTACTGTTCAGTTCCAGAACAGTACATTGCTATCAGCAAGTATTTGCAATGGATCTTGGATAATATACGTGGGTAGGAAAAGCGTACCGGCTTCAGCTGGACGTAAATACTCAAAATGTAA]
[+] EMBL BM581206 [CCGCCCACGCGTCCGTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGTCGATTCGCTGACGTGTTTGGCGAGCGATCGGGCATTTTTCGGAAGATTGCTGTACTCCAAAGCATTCTGCGCCGGATACAAAAATGGGACTGGAGTGTGCAATGGAGACAGTGGGGGTGGAATGTTTTTCCAGTTTCAAAACCGGTGGTATCTGAAGGGCGTGGTTTCGTTTAGCAATACTATTGATGCTACCGGAGTGTGCAATCTAAAACAATACATCGGGTTTACGGACGCTTCGCAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTGGGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGGACGGAACGAGCATATATACGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCGCCACCCGTTCGTTGATTCCGAGTACGTCCCCCTGTAACGGAGTCTTGCTGAATCGAAACTACGTTCTCACGACCAATTGTGTCGATTTACAGGGATGAAATCAGTGTGACACTAGG ]
[+] EMBL BM621868 [ ccggtTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAAGCACTCATGCCGGTAGTCGATTCCCTGACGTGTTT ]
[+] EMBL BX608813 [ CGGAGTGTGCAATCTAAAACAATACCTTGGGTTTACGGACGCTTCGCAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTGGGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGGACGGAACGAGCATATATACGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCGCCACCCGTTCGTTGATTCCGAGTACGT CCCCTGTAACGGAGTCTTGCTGAATCGAAACTACGTTCTCACGACCAATTGTGTCGATTTACA GGATGAAATCAGTGTGACACTAGGCGATTACGATACGAGCAAGACAAAGGACTGCGGCACCATAGACGGACGAGAGCAATGTGTATCCGGCGTGCAGACTGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTCACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGC ]
[+] EMBL BX615946 [ GCACCATAGACGGACGAGAGCAATGTGTATCCGGCGTGCAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACT GCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTGACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCACCGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAGAACCATTTGCGCTCGCAATATAAACG ]
[+] EMBL BX617393 [ CAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCGGCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGTGACTCCTCAGCAGCGTGAACGTCTGCACAACCGGTACATCATGACGGGCTGGAAGGAGAGTGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTGTCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAGAACCATTTGCGCTCGCAATATAAACGATCCTTCCCGATCGCCGCAATGCAATGATTATCAGCCAGGATCGGCGATATAGGCCATAGAGAAGAAATCTAACCGATACTTGCTCTACGGGTTGCAGACGGGCATTAGCTACTGTTCAGTTCCAGAACAGTACATTGCTATCAGCAAGTATTTGCAATGGATCTTGGATAATATACGTGGGTAGGAAAAGCGTACCGGCTTCAGCTGGACGTAAATACTCAAAATGTAA]
consensusID : consensus_8193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 673 fasta sequence
[CCACGCGTCCGGGAGAAGATCCTACCATGGTTCGTGAAACGGTGCCGTGGCAAGTGGATGGTATATTTGCGATACTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTGCAAATCAAAGACTTTAATGATAACGAGTGTGGAAAACGATTGGCCCAGCGCGAAGGGCTAGTGAAGGGTGGATATTCCACGCGCCCCGGTGACTGGCCGTGGCATGTAGCGCTCTATCAGCGGGGCATCAATAGCGATGGTTTCGAGTATGCGTGTGGTGGCAGCATTGTGCATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGTGTCTTTGGAAGCGGGACGATGGGTTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGT]
[+] EMBL BM634880 [CCACGCGTCCGGGAGAAGATCCTACCATGGTTCGTGAAACGGTGCCGTGGCAAGTGGATGGTATATTTGCGATACTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTGCAAATCAAAGACTTTAATGATAACGAGTGTGGAAAACGATTGGCCCAGCGCGAAGGGCTAGTGAAG ]
[+] EMBL BM584405 [ ccgCATGGTTCGTGAAATGGTGGCGTGGCAAGTGGCTGGTATATTTGCGATACTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTACAAATCAAAGACTTTAATGATAACGAGTGTGGAAAACGTTTGGCCCAGCGCGAAGGGCTAGTGAAGGGTGGATATTCCACGCGCCCCGGTGACTGGCCGTGGCATGTAGCGCTCTATCAGCGGGGCATCAATAGCGATGGTTTCGAGTATGCGTGTGGTGGCAGCATTGTGCATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGTGTCTTTGGAAGCGGGACGATGGG ]
[+] EMBL BM619533 [ ccGGGCTAGTGAAGGGTGGATATTCCACGCGCCCCGGTGACTGGCCGTGGCATGTAGCGCTCTATCAGCGGGGCATCAATAGCGATGGTTTCGAGTATGCGTGTGGTGGCAGCATTGTGCATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGTGTCTTTGGAAGCGGGACGATGGGTTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGATGGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAGT]
[+] EMBL BX605913 [ ATGCGTGTGGTGGCAGCATTGTGCGTCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGAAAATTCCAACTGAAAATTTGCAGCTAAAGATGGGCCGGTTCAATCTGTCGAACGATGCGGAGGAGCATGCGGAAGAGTTTAACGTGGTCGAAACGATAGTGCACGTGGGCTTTCGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTCAATGATTACATTCAACCGGTGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8193#0 CCGCCCACGCGTCCGTCGTCTTGCCGAGTGTCCACGACCAATCGGGCACGGTAGTTGGAT 60
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 GGGGACTTTCGGAAGAGAATCGGCTAGGCGCGGTCCTGAACGAGGCACTCATGCCGGTAG 120
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 TCGATTCGCTGACGTGTTTGGCGAGCGATCGGGCATTTTTCGGAAGATTGCTGTACTCCA 180
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 AAGCATTCTGCGCCGGATACAAAAATGGGACTGGAGTGTGCAATGGAGACAGTGGGGGTG 240
consensus_8193#1 --------------------------------------------CCACGCGTCCGGGAGA 16
* * ***
consensus_8193#0 GAATGTTTTTCCAGTTTCAAAACCGGTGGTATCTGAAGGGCGTGGTTTCGTTTAGCAATA 300
consensus_8193#1 AGATCCTACCATGGTTCGTGAAACGGTGCCGTGGCAAGTGGATGGTAT--ATTTGCGATA 74
** * *** ** ***** * *** * **** * ** ** ***
consensus_8193#0 CTATTGATGCTACCGGAGTG-TGCAATCTAAAACAATACATCGGGTTTACGGACGCTTCG 359
consensus_8193#1 CTGTTACTGCACAATGTTTGCTACAGTTTCGCACAGGACGAGCTGCAAATCAAAGACTTT 134
** ** *** * ** * ** * * *** ** * * * * *
consensus_8193#0 CAATACATCGACTGGTTGTACGAAAATACACCAAACAGTGGAATCGACGATCCGATACTG 419
consensus_8193#1 AATGATAACGAGTG--TGGAAAACGATTGGCC---CAGCGCGAAGGGCTAGTGAAGGGTG 189
* * * *** ** ** * * ** ** *** * * * * * * **
consensus_8193#0 GGACATCCCAACATCCGCCTCATCAACCAGGGGAACTGTGG-ACGGAACGAGCATATATA 478
consensus_8193#1 G-ATATTCCA---CGCGCCCCGGTGACTGG-----CCGTGGCATGTAGCGCTC-----TA 235
* * ** *** **** * ** * * **** * * * ** * **
consensus_8193#0 CGAGTTCGGTGAGGATCGTAAACCCATCTTTAAGCAATATCCTTGGATGGTGACACTGCG 538
consensus_8193#1 TCAGCGGGGCATCAATAGCGA---TGGTTTCGAGTA-TGCGTGTGG-TGGCAGCATTGTG 290
** ** ** * * ** ** * * *** *** ** ** *
consensus_8193#0 CCACCCGTTCGTTGATTCCGAGTACGTCCCCCTGTAACGGAGTCTTGCTGAATCGAAACT 598
consensus_8193#1 C--ATCGGTATCTGGTGCTAACGGCGGCACACTGCGTCACGTTTGCGGCAAGCCGACGGA 348
* ** * ** * * * ** * * *** * * * * ***
consensus_8193#0 ACGTTCTCACGACCAATTGTGTCGATTTACAGGGATGAAATCAGTGTGACACTAGGCGAT 658
consensus_8193#1 AAATTCCAACTGAAAATT-TGCAGCTAAAGATGGGCCGGTTCAATCTG---TCGAACGAT 404
* *** ** **** ** * * * * ** *** * ** ****
consensus_8193#0 TACGATACGAGCAAGACAAAGGACTGCGGCACCATAGACGGACGAGAGCA-ATGTGTATC 717
consensus_8193#1 -GCGG-AGGAGCATG-CGGAAGAGTTTAGCGTGATCGAAACGATAGTGCACGTGGGCTTT 461
** * ***** * * * ** * ** ** ** ** *** ** * *
consensus_8193#0 CGGCGTGCAGACGGTGTCCGTGGGGCAACTATTTCGCAAAGATAATCTAGTACTAGCCCG 777
consensus_8193#1 CGGCCGACCACGTTCGAGAACGACATCGCCATCCTGCGGGTGGAAATTCCCATCATTTTC 521
**** * * * * ** ** ** * * *
consensus_8193#0 GCTAACCGTTCCCGCTGTGATCGGTCGGCGAGATCATATTGAGTCGATCTGTCTGCCGGT 837
consensus_8193#1 AATGATTACATTCAAC-CGGTGTGTCTTTGGAAGCGGGACGA-TGGGTTCGTCTTGCCGA 579
* * * * * *** * * * ** * * * **** * *
consensus_8193#0 GACTCCTCAGCAGCGTGAACGTCTGTACAACCGGTACATCATGACGGGCTGGAAGGAGAG 897
consensus_8193#1 GTGTCCACGACCAATCGGGC------ACGGTAGTTGGATGGGGAC--TTTCGGAAGAGAA 631
* *** * * * * ** * * ** *** * * * ****
consensus_8193#0 TGGATCTGACGCGCGCATACTGCAACGAGCACTGCTGGAAGCAATCGACTTGAACAAGTG 957
consensus_8193#1 TCGGCTAGGCGCG---GTCCTGAACGAGGCACTCATGCCGGTAGT--------------- 673
* * * **** * *** * ***** ** * * *
consensus_8193#0 TCGGGCCGAATTTCAAGCATCTAGCTATGCATCCGAAGCGTCGAAGCAGATCGATAGCAG 1017
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 AACCATTTGCGCTCGCAATATAAACGATCCTTCCCGATCGCCGCAATGCAATGATTATCA 1077
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 GCCAGGATCGGCGATATAGGCCATAGAGAAGAAATCTAACCGATACTTGCTCTACGGGTT 1137
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 GCAGACGGGCATTAGCTACTGTTCAGTTCCAGAACAGTACATTGCTATCAGCAAGTATTT 1197
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 GCAATGGATCTTGGATAATATACGTGGGTAGGAAAAGCGTACCGGCTTCAGCTGGACGTA 1257
consensus_8193#1 ------------------------------------------------------------
consensus_8193#0 AATACTCAAAATGTAA 1273
consensus_8193#1 ----------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||