These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1397 fasta sequence [TTGCCCGAGGTTAATATAACAAAAAACACACACCACCCCAGAATCTGCTTATTACGCCGGTACGAACAGTCAACCTAGAAAGGAAAAAAACTAGAAAGCGAGTGTGCAAATATAAGCCGGATAAACTACTAAAAACTCTTCTAACTGTTAAGCGCAAATTCGACCACTCCGTTTCTTTTGGTCGCACACAAGAAAGGAATGAGAAATGCTACAATAGAGAAAACCTATCCCA---GGTTAAGATACACAAAAAAGCTAACAT-AAAAAAACGATGAAAAATCAATGATAATGTATATCAATAGATGTGCATAATTCGGATAAAAAACACACACAAACACACGCTCACACCTTTACTCGATTGTAAAATAGACTATTAAACTACAATGTAACAGACAGATGGCGAAACAATTGAAAGCGCAACTGAGAAGACTATAGGGAAGAAACAGCTAT---AGCAGCAGCAGTGCGCTTTACAAACCCAATTGGTGTGTAGCATCGAGTATGAAAGTAAAAGCGATCCAATGGAGGAGAAGGATACGTTGTGTAGGGCTTTTCACATTGATTAGTGCTAGGAGTATACACATACACACACAAAACAGCAAACCAACGGTGCGGAAGTTCAGTAAAAGATCCAACTATTTGTGTAGTGTGCGAGCATAAATTGACGCGCTGCAGCTAAAACGAATGTGCGCGCGCGCGCCCTCTTCCCGTTTTCCCGAATCTTACTGCTTTTCGCGGGAGCTAGCGATGTTAGCGAAACATACTAACTAGTAGCGATAGCAATGGCAGGAAAGGACACTTTTTTCTACAGAGAAATGCAAAACCAATTTCTTAGATACACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAAA-TTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGTAAAAAAAATAGT-CTCTGATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTGAATATGTTAACAACACCATAATTATAAGGGGAACAAAAAAACACACAAAAACAGCAAATTTAAATAAGTGGTTCAATCATTATTTTCCGTTTGTCACTTTCATCGACTTGCTTGTTGCTACACGTGGTAAACGATGCGTTGCGTAACTGCGCAGCAACACTAGTAGCGCAAACTTAAGAATGTAGTACAGGATACAGGTTAGTAGGCGAAATGCAAAAACAAACCCATCAAACAGCCAGGATCCTTCTGTTAAATTGCATTCACTGTGTGTATGTGNGTGTGTGCGCGTCTATTTGTGTGGCTGTGTGTACGGGTTGTCTCGT] [+] EMBL AL932762 [TTGCCCGAGGTTAATATAACAAAAAACACACACCACCCCAGAATCTGCTTATTACGCCGGTACGAACAGTCAACCTAGAAAGGAAAAAAACTAGAAAGCGAGTGTGCAAATATAAGCCGGATAAACTACTAAAAACTCTTCTAACTGTTAAGCGCAAATTCGACCACTCCGTTTCTTTTGGTCGCACACAAGAAAGGAATGAGAAATGCTACAATAGAGAAAACCTATCCCA GGTTAAGATACACAAAAAAGCTAACAT AAAAAAACGATGAAAAATCAATGATAATGTATATCAATAGATGTGCATAATTCGGATAAAAAACACACACAAACACACGCTCACACCTTTACTCGATTGTAAAATAGACTATTAAACTACAATGTAACAGACAGATGGCGAAACAATTGAAAGCGCAACTGAGAAGACTATAGGGAAGAAACAGCTAT AGCAGCAGCAGTGCGCTTTACAAACCCAATTGGTGTGTAGCATCGAGTATGAAAGTAAAAGCGATCCAATGGAGGAGAAGGATACGTTGTGTAGGGCTTTTCACATTGATTAGTGCTAGGAGTATACAC ] [+] EMBL BM592696 [ ccGGTCGCACACAAGAAAGGAATGAGAAATGCTAAAATAGAGAAAACCTATCCCAGGGGGTTAAGATACACAAAAAAGCTAACATAAAAAAAACGATGAAAAATCAATGATAAT ] [+] EMBL BX628862 [ AGACTATAGGGAAGAAACAGCTATAGCAGCAGCAGCAGTGCGCTTTACAAACCCAATTGGTGTGTAGCATCGAGTATGAAAGTAAAAGCGATCCAATGGAGGAGAAGGATACGTTGTGTAGGGCTTTTCACATTGATTAGTGCTAGGAGTATACACATACACACACAAAACAGCAAACCAACGGTGCGGAAGTTCAGTAAAAGATCCAACTATTTGTGTAGTGTGCGAGCATAAATTGACGCGCTGCAGCTAAAACGAATGTGCGCGCGCGCGCCCTCTTCCCGTTTTCCCGAATCTTACTGCTTTTCGCGGGAGCTAGCGATGTTAGCGAAACATACTAACTAGTAGCGATAGCAATGGCAGGAAAGGACACTTTTTTCTACAGAGAAATGCAAAACCAATTTCTTAGATACACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAAA TTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGTAAAAAAAATAGT CTCTGATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTGAATATGTTAACAACACCATAATT ] [+] EMBL BX619265 [ TTCAGTAAAAGATCCAACTATTTGTGTAGTGTGCGAGCATAAATTGACGCGCTGCAGCTAAAACGAATGTGCGCGCGCGCGCCCTCTTCCCGTTTTCCCGAATCTTACTGCTTTTCGCGGGAGCTAGCGATGTTAGCGAAACATACTAACTAGTAGCGATAGCAATGGCAGGAAAGGACACTTTTTTCTACAGAGAAATGCAAAACCAATTTCTTAGATACACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAAA TTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATNGTAAAAAAAATAGT CTCTGATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTGAATATGTTAACAACACCATAATTATAANNGGAAC AAAAAACACACAAA ] [+] EMBL BX629288 [ ATTTGTGTAGTGTGCGAGCATAAATTGACGCGCTGCAGCTAAAACGAATGT GCGCGCGCGCCCTCTTCCCGTTTTCCCGAATCTTACTGCTTTTCGCGGGAGCTAGCGATGTTAGCGAAACATACTAACTAGTAGCGATAGCAATGGCAGGAAAGGACACTTTTTTCTACGGAGAAATGCAAACCCAATTTCTTAGATACACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCGCATTGTGTTGTGTTAAAAATTGAAAAGTTGGTTTGACTTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGT GAAAAAATCGTAGTCTGATACGTAAATATCAGCAGGAGATGGTTAAGTAAAATGCAATGAAGCTGAATATACTAACAACACCATAATTATAAGGGGAACAAAAAAACACACAAAAACAGCAAATTTAAATAAGTGGTTCAATCATTATTTTCCGTTTGTCACTTTCATCGACTTGCTTGTTGCTACACGTGGTAAACGATGCGTTGCGTAACTGCGCAGCAACACTAGTAGCGCAAACTTAAGAATGTAGTACAGGATACAGGTTAGTAGGCGAAATGCAAAAACAAACCCATCAAACAGCCAGGATCCTTCTGTTAAATTGCATTCACTGTGTGTATGTGNGTGTGTGCGCGTCTATTTGTGTGGCTGTGTGTACGGGTTGTCTCGT] [+] EMBL BX629181 [ ATTTGTGTAGTGTGCGAGCATAAATTGACGCGCTGCAGCTAAAACGAATGT GCGCGCGCGCCCTCTTCCCGTTTTCCCGAATCTTACTGCTTTTCGCGGGAGCTAGCGATGTTAGCGAAACATACTAACTAGTAGCGATAGCAATGGCAGGAAAGGACACTTTTTTCTACGGAGAAATGCAAACCCAATTTCTTAGATACACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCGCATTGTGTTGTGTTAAAAATTGAAAAGTTGGTTTGACTTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGT GAAAAAATCGTAGTCTGATACGTAAATATCAGCAGGAGATGGTTAAGTAAAATGCAATGAAGCTGAATATACTAACAACACCATAATTATAAGGGGAACAAAAAAACACACAAAAACAGCAAATTTAAATAAGTGGTTCAATCATTATTTTCCGTTTGTCACTTTCATCGACTTGCTTGTTGCTACACGTGGTAAACGATGCGTTGCGTAACTGCGCAGCAACACTAGTAGCGCAAACTTAAGAATGTAGTACAGGATACAGGTTAGTAGGCGAAATGCAAAAACAAACCCATCAAACAGCCAGGATCCTTCTGTTAAATTGCATTCACTGTGTGTATGTGNGTGTGTGCGCGTCTATTTGTGTGGCTGTGTGTACG ] consensusID : consensus_8194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGGGTTAAAAAAAATGCAATGAAGCTGAATATACTAACAACACCATCATTATAAGGGGAACAAAAAAACACACAAAAACAGCAAATTTAAATAAGTGGTTCAATCATTATTTTCCGTTAATCACTTTCTTCGACTTGCTTGCTACACGTGGTTAACGATGCGTTGCGTAACTGCGCAGCAACACTAGTGGCGCAAACTTAAGAATGTAGTACAGGATACGGTTAGTAGGCGAAGTACAAAAACAAACCCATTAAACAGCCAGGTTCCTTCTGTTAAAATGCATTCACTGTGTGTATGTGTGTGAGTGTGTGTGCGTGTCTATTTGTGTGGCTGTGTGTACGGTTTGTCTCGTAACATTGTACGATCGGTGTTACATTTAAGTTCATGGGACAATAAGTGCACATTTCCTTTCAGAATCGGGGGCGGCAGTGTGAGTTTAGTTTTCAAAACGATTCTTTCTTTTTGTGTAGCATTTAGTTATCAACAATATTATGCGTTTGTGTTTACTCTTGACAACACTTCTTACTTTTTAAGAGGCAGGGGCAGGACTTGGCAGTAGAGTGCGCTATGCATGAATGTGGAAACAAGGGATGA] [+] EMBL BM622465 [CCGGGTTAAAAAAAATGCAATGAAGCTGAATATACTAACAACACCATCATTATAAGGGGAACAAAAAAACACACAAAAACAGCAAATTTAAATAAGTGGTTCAATCATTATTTTCCGTTAATCACTTTCTTCGACTTGCTTGCTACACGTGGTTAACGATGCGTTGCGTAACTGCGCAGCAACACTAGTGGCGCAAACTTAAGAATGTAGTACAGGATACGGTTAGTAGGCGAAGTACAAAAACAAACCCATTAAACAGCCAGGTTCCTTCTGTTAAAATGCATTCACTGTGTGTATGTGTGTGAGTGTGTGTGCGTGTCTATTTGTGTGGCTGTGTGTACGGTTTGTCTCGTAACATTGTACGATCGGTGTTACATTTAAGTTCATGGGACAATAAGTGCACATTTCCTTTCAGAATCGGGGGCGGCAGTGTGAGTTTAGTTTTCAAAACGATTCTTTCTTTTTGTGTAGCATTTAGTTATCAACAATATTATGCGTTTGTGTTTACTCTTGACAACACTTCTTACTTTTTAAGAGGCAGGGGCAGGACTTGGCAGTAGAGTGCGCTATGCATGAATGTGGAAACAAGGGATGA] consensusID : consensus_8194#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence [CAGAATCGCCACGAGGTNTATTTTCTACAGAGAAATGCAAAACCAATTTCTTAGATACACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAAATTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGTAAAAAAAATAGTCTCTGATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTGAATATGTTAACAACACCATAATTATAAGGGGAACAAAAAACACACAAAAACAGCAAATTTCAACATAAGTGGTTTCAATCATTATGTTGTCCCGTGTTGTCACGTTTTCATCGGACTTTGCTTTGGCTAACACGTGGGTTAAACCGATGGCGGTTGCGTAAACCTNGCGCCAGGCAAACCAACCTAGTTGGGCGCAAAACTTTCACGCACATCGTTGTTCACACAGGGAATNACCG] [+] EMBL BX469071 [CAGAATCGCCACGAGGTNTATTTTCTACAGAGAAATGCAAAACCAATTTCTTAGATACACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAAATTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGTAAAAAAAATAGTCTCTGATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTGAATATGTTAACAACACCATAATTATAAGGGGAACAAAAAACACACAAAAACAGCAAATTTCAACATAAGTGGTTTCAATCATTATGTTGTCCCGTGTTGTCACGTTTTCATCGGACTTTGCTTTGGCTAACACGTGGGTTAAACCGATGGCGGTTGCGTAAACCTNGCGCCAGGCAAACCAACCTAGTTGGGCGCAAAACTTTCACGCACATCGTTGTTCACACAGGGAATNACCG] [+] EMBL AGAA13347 [ cgcgtccgCACACACACATACAGACACGCACACATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGCAATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAAATTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGTAAAAAAAATAGTCTCTGATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTGAATATGTTAACAACACCATAATTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8194#0 TTGCCCGAGGTTAATATAACAAAAAACACACACCACCCCAGAATCTGCTTATTACGCCGG 60 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 TACGAACAGTCAACCTAGAAAGGAAAAAAACTAGAAAGCGAGTGTGCAAATATAAGCCGG 120 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 ATAAACTACTAAAAACTCTTCTAACTGTTAAGCGCAAATTCGACCACTCCGTTTCTTTTG 180 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 GTCGCACACAAGAAAGGAATGAGAAATGCTACAATAGAGAAAACCTATCCCAGGTTAAGA 240 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 TACACAAAAAAGCTAACATAAAAAAACGATGAAAAATCAATGATAATGTATATCAATAGA 300 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 TGTGCATAATTCGGATAAAAAACACACACAAACACACGCTCACACCTTTACTCGATTGTA 360 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 AAATAGACTATTAAACTACAATGTAACAGACAGATGGCGAAACAATTGAAAGCGCAACTG 420 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 AGAAGACTATAGGGAAGAAACAGCTATAGCAGCAGCAGTGCGCTTTACAAACCCAATTGG 480 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 TGTGTAGCATCGAGTATGAAAGTAAAAGCGATCCAATGGAGGAGAAGGATACGTTGTGTA 540 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 GGGCTTTTCACATTGATTAGTGCTAGGAGTATACACATACACACACAAAACAGCAAACCA 600 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 ACGGTGCGGAAGTTCAGTAAAAGATCCAACTATTTGTGTAGTGTGCGAGCATAAATTGAC 660 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 GCGCTGCAGCTAAAACGAATGTGCGCGCGCGCGCCCTCTTCCCGTTTTCCCGAATCTTAC 720 consensus_8194#2 ------------------------------------------------------------ consensus_8194#1 ------------------------------------------------------------ consensus_8194#0 TGCTTTTCGCGGGAGCTAGCGATGTTAGCGAAACATACTAACTAGTAGCGATAGCAATGG 780 consensus_8194#2 ---------------------------------------------------CAGAATCGC 9 consensus_8194#1 ----------CCGGGTTAAAAAAAATGCAATGAAGCTGAATATACTAACAACACCATCAT 50 * * consensus_8194#0 CAGGAAAGGACACTTTTTTCTACAGAGAAAT-GCAAAACCAATTTCTTAGATACACACAC 839 consensus_8194#2 CACGAGGTN----TATTTTCTACAGAGAAAT-GCAAAACCAATTTCTTAGATACACACAC 64 consensus_8194#1 TATAAGGGGA-ACAAAAAAACACACAAAAACAGCAAATTTAAATAAGTGGTTCAATCATT 109 * * *** * *** ***** ** * * * * * consensus_8194#0 ACATACAGACACGCACA--CATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGC 897 consensus_8194#2 ACATACAGACACGCACA--CATACATGCACGTGATATGGATTGATAGTTTTGTGTGGTGC 122 consensus_8194#1 ATTTTCCGTTAATCACTTTCTTCGACTTGCTTGCTACACGTGGTTAACGATGCGTTGCGT 169 * * * * * *** * * * * ** ** * * ** ** ** * * consensus_8194#0 AATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAA 957 consensus_8194#2 AATATTTTACCTACTACATTCAAACACGACTTTCTCATTGTGTTGTGTTAAAAATTGAAA 182 consensus_8194#1 AACTGCGCAGCAACACTAGTGGCGCA-AACTTA---AGAATGTAGTACAGGATACGGTTA 225 ** * * ** * * ** **** * *** ** * * * * consensus_8194#0 ATTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGTAAAAAAAA 1017 consensus_8194#2 ATTGGTTTGACCTTTAATATTACTTATTTCCATGGAAAATTCCTTAAATTGTAAAAAAAA 242 consensus_8194#1 GTAGGCGAAGTACAAAAACAAACCCATTAAACAGCCAGGTTCCTTCTGTTAAAATGCATT 285 * ** ** ** *** * * ****** ** ** * consensus_8194#0 TAGTCTCTG---ATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTG 1074 consensus_8194#2 TAGTCTCTG---ATACGTAACTATCAGCCGAAGATGGTTAAGTAAAATGCAATGAAGCTG 299 consensus_8194#1 CACTGTGTGTATGTGTGTGAGTGTGTGTGCGTGTCTATTTGTGTGGCTGTGTGTACGGTT 345 * * * ** * ** * * * * * ** ** * * * consensus_8194#0 AATATGTTAACA--ACACCATAATTATAAGG----GGAACAAAAAAACACACAAAAACAG 1128 consensus_8194#2 AATATGTTAACA--ACACCATAATTATAAGG----GGAACAAAAAA-CACACAAAAACAG 352 consensus_8194#1 TGTCTCGTAACATTGTACGATCGGTGTTACATTTAAGTTCATGGGACAATAAGTGCACAT 405 * * ***** ** ** * * * * ** * * * *** consensus_8194#0 CAAATTTAAA--TAAGTGGTT-CAATCATTATTTTCCGTTTGTCACTTTCATCGACTTGC 1185 consensus_8194#2 CAAATTTCAACATAAGTGGTTTCAATCATTATGTT------GTCCCGTGTTGTCACGTTT 406 consensus_8194#1 TTCCTTTCAGAATCGGGGGCGGCAGTGTGAGTTTAGTTTTCAAAACGATTCTTTCTTTTT 465 *** * * * ** ** * * * * * consensus_8194#0 TTGTTGCTACACGTGGTAAACGATGCGTTGCGTAACTGCGCAGCAACACTAGTAGCGCAA 1245 consensus_8194#2 TCATCGGACTTTGCTTTGGCTAACACGTGGGTTAA------ACCGATGGCGGTTGCGTAA 460 consensus_8194#1 GTGTAGCATTTAGTTATCAACAATATTATGCGTTTGTGTTTACTCTTGACAACACTTCTT 525 * * * * * * * * consensus_8194#0 ACTTAAGAATGTAGTACAGGATACAGGTTAGTAGGCGAAATGCAAAAACAAACCCATCAA 1305 consensus_8194#2 ACCTN-GCGCCAGGCAAACCAACCTAGTTGG-GCGCAAAACTTTCACGCACATC-GTTGT 517 consensus_8194#1 ACTTT-TTAAGAGGCAGG--GGCAGGACTTGGCAGTAGAGTGCGC-TATGCATG-AATGT 580 ** * * * * * * * * consensus_8194#0 ACAGCCAGGATCCTTCTGTTAAATTGCATTCACTGTGTGTATGTGNGTGTGTGCGCGTCT 1365 consensus_8194#2 TCACACAGGGAATNACCG------------------------------------------ 535 consensus_8194#1 GGAAACAAGGGATGA--------------------------------------------- 595 * ** * consensus_8194#0 ATTTGTGTGGCTGTGTGTACGGGTTGTCTCGT 1397 consensus_8194#2 -------------------------------- consensus_8194#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||