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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1179 fasta sequence
[GCATCCACCACGCCCGGTGTGTCCGGAATCAGTACGCTAAGCGGGAAGGCGCCCACCCCGCTGCGGCCGCGCATCAAACGTGTCAATCTGCGTGATATGCTGTTCTATCTGGAGCAGGAGAGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTGCTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTGTTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGATGGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGGCAACGGCAGTGTGGCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGATTCATCTGACAAAAATGTAGATTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCCTTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGGAAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAGAAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGAGAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGGCAAAATGGATTTATAATTTCCCTGCAGCAGGAAAAAGGGGGATGGTCTGTCGCTTCAGGCAAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCTGAATTAAAACGGTCCAACGCTGTGTATGTGCGTGGGCGTGTGCAAGCGCGCGTGTACGATTTTGTTGTGATGGTCATATGTCAGCTCGCAGATAATCCGCAGC]
[+] EMBL BX609869 [GCATCCACCACGCCCGGTGTGTCCGGAATCAGTACGCTAAGCGGGAAGGCGCCCACCCCGCTGCGGCCGCGCATCAAACGTGTCAATCTGCGTGATATGCTGTTCTATCTGGAGCAGGAGAGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTGCTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTGTTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGATGGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGGCAACGGCAGTGTGGCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGA ]
[+] EMBL BX601779 [ TGCTGTTCTATCTGGAGCAGGAGAGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTGCTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTGTTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGATGGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGTCAACGGCAGTGTGGCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGATTCATCTGACAAAAATGTAGATTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGAAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATTAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTATGATGCGAACTGATTTTCTATGTTATAAAC ]
[+] EMBL BX627657 [ TTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCCTTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGGAAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAGAAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGAGAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGGCAAAATGGATTTATAATTTCCCTGCAGCAGGAAAAAGGGGGATGGTCTGTCGCTTCAGGCAAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCT ]
[+] EMBL BX626733 [ gatTTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCCTTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGGAAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAGAAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGAGAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGGCAAAATGGATTTATAATTT ]
[-] EMBL CNS096M0 [ GAAAAAGGGGTATGGTCTGTCGCTTCAGGCAAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCTGAATTAAAACGGTCCAACGCTGTGTATGTGCGTGGGCGTGTGCAAGCGCGCGTGTACGATTTTGTTGTGATGGTCATATGTCAGCTCGCAGATAATCCGCAGC]
consensusID : consensus_8199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 691 fasta sequence
[CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGATTCCACAGGAAAAGCAGTGTGCGTTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTT--TGTGTGTGTGTGTCCGGCGTGGTGTGTATCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCC--TGTGTGTGTCTCTTTGTGTTTGTGTGGAAAAAGAAGTGCTCGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACGCCTACGGGAGGAAAGTGACCAAATCATGAACGGACCACCGCTGCAGGATGGCTAGATCATAGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAGCGACACTACCAACGGAACTGTTCCAGGCGGAAAAGTGTAATCCAACGGTATCGGTCCGCCGTTCGTTGGCGTCTGCCATCTCATCCGGGAACCCCCACCCAGCTGCCTCTTGCCTCATCCTCAG]
[+] EMBL BM575280 [CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGATTCCACAGGAAAAGCAGTGTGCGTTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTT TGTGTGTGTGTGTCCGGCGTGGTGTGTATCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCC TGTGTGTGTCTCTTTGTGTTTGTGTGGAAAAAGAAGTGCTCGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACGCCTACGGGAGGAAAGTGACCAAATCATGAACGGACCACCGCTGCAGGATGGCTAGATCATAGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAGCGACACTACCAACGGAACTGTTCCAGGCGGAAAAGTGTAATCCAACGGTATCGGTCCGCCGTTCGTTGGCGTCTGCCATCTCATCCGGG ]
[+] EMBL BM628090 [CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGATTCCACAGGAAA AGTGTGCG TTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGTGTGTGTCCGGCGTGGTGTGTAGCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCCTGTGTGTGTGTCTCTTTGTGTTTGTGTGAAAAAAGAAGTGCTCGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTG ]
[+] EMBL AGA284807 [ AATGCACAATATAGATAACACTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACGCCTACGGGAGGAAAGTGATCAAATCAGGAACGGACCACCGCTGCAGGATGGCTAGATCATAGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAGCGACACTACCAACGGAACTGTTCCAGGTGGAAAAGTGTAATCCAACGGTATCGGTCCGCCGTTCGTTGGCTTCTGCCATCTCATCCGGGAACCCCCACCCAGCTGCCTCTTGCCTCATCCTCAG]
consensusID : consensus_8199#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[AAAGCAGTGTGCGTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGTGTGTGTCCGGCGTGGTGTGTAGCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCCTGTGTGTGTGTATTTTAAGGGGGCAACGGCAGTGTGGCAGGAGCGTGTATTGTCTCCGAATAGCAGCTGCAAGGAA]
[+] EMBL CNS096LZ [AAAGCAGTGTGCGTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGTGTGTGTCCGGCGTGGTGTGTAGCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCCTGTGTGTGTGTATTTTAAGGGGGCAACGGCAGTGTGGCAGGAGCGTGTATTGTCTCCGAATAGCAGCTGCAAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8199#1 -CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGAT 59
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 GCATCCACCACGCCCGGTGTGTCCGGAATCAGTACGCTAAGCGGGAAGGCGCCCACCCCG 60
consensus_8199#1 TCCACAGGAAAAGCAGTGTGCGTTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTG 119
consensus_8199#2 ---------AAAGCAGTGTGCGTTTTTT-GTTTAGTGTCATATGTTATTTTCACCTCGTG 50
consensus_8199#0 CTGCGGCCGCGCATCAAACGTGTCAATCTGCGTGATATGCTGTTCTATCTGGAGCAGGAG 120
* ** * * * * * * * *** * * * * *
consensus_8199#1 TTGTAAGTGTGTGTG-------TAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGT 172
consensus_8199#2 TTGTAAGTGTGTGTG-------TAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGT 103
consensus_8199#0 AGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTG 180
* ** * * * **** *** * ** ** *** ***
consensus_8199#1 GTG--TCCGGCGTGG--TGTGTATCGCA-CAGTGTGGTCAGTAT-TTCTTTTTTGTTTTG 226
consensus_8199#2 GTGTGTCCGGCGTGG--TGTGTAGCGCA-CAGTGTGGTCAGTAT-TTCTTTTTTGTTTTG 159
consensus_8199#0 CTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTG 240
** **** * * * * * ** * *** ** * * ** * * * ** **
consensus_8199#1 TTACTTGTGGATT----AAGGTGTGTTGTGGCGTGTCTG-----TCGGTCCCCT------ 271
consensus_8199#2 TTACTTGTGGATT----AAGGTGTGTTGTGGCGTGTCTG-----TCGGTCCCCT------ 204
consensus_8199#0 TTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGAT 300
** * * * * * * * * *** * * * **
consensus_8199#1 -GTGTCCTGTGTGCCCC---TGTGTGTGTCTCTTTGTGTTTGTGTGGAAAAAGAAGTGCT 327
consensus_8199#2 -GTGTCCTGTGTGCCCC---TGTGTGTGTGTATTT----TAAGGGGGCAACGGCAGTGTG 256
consensus_8199#0 GGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGGCAACGGCAGTGTG 360
* * * * *** * * **** ** * * * * ** ** * ****
consensus_8199#1 CGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGA 387
consensus_8199#2 GCAGGAGCGTGTATTGTCTCCGAATAGCAGCTGCAAGGAA-------------------- 296
consensus_8199#0 GCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGATTCATCTGACAA 420
* *** * * **** * **** *
consensus_8199#1 ATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACG 447
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 AAATGTAGATTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGA 480
consensus_8199#1 CCTACGGGAGGAAAGTGACCAAATCATGAACGGACCACCGCTGCAGGATGGCTAGATCAT 507
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 AAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTG 540
consensus_8199#1 AGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAG 567
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 GTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGA 600
consensus_8199#1 CGACACTACCAACGGAACTGTTCCAGGCGGAAAAGTGTAATCCAACGGTATCGGTCCGCC 627
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 TTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAG 660
consensus_8199#1 GTTCGTTGGCGTCTGCCATCTCATCCGGGAACCCCCACCCAGCTGCCTCTTGCCTCATCC 687
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 AGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCC 720
consensus_8199#1 TCAG-------------------------------------------------------- 691
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 TTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGG 780
consensus_8199#1 ------------------------------------------------------------
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 AAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAG 840
consensus_8199#1 ------------------------------------------------------------
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 AAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGA 900
consensus_8199#1 ------------------------------------------------------------
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 GAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGG 960
consensus_8199#1 ------------------------------------------------------------
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 CAAAATGGATTTATAATTTCCCTGCAGCAGGAAAAAGGGGGATGGTCTGTCGCTTCAGGC 1020
consensus_8199#1 ------------------------------------------------------------
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 AAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCTGAAT 1080
consensus_8199#1 ------------------------------------------------------------
consensus_8199#2 ------------------------------------------------------------
consensus_8199#0 TAAAACGGTCCAACGCTGTGTATGTGCGTGGGCGTGTGCAAGCGCGCGTGTACGATTTTG 1140
consensus_8199#1 ---------------------------------------
consensus_8199#2 ---------------------------------------
consensus_8199#0 TTGTGATGGTCATATGTCAGCTCGCAGATAATCCGCAGC 1179
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||