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Anopheles gambiae
cluster # 820 cluster # 820       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_820#0 length = 569 sequences # 1  
consensus_820#1 length = 545 sequences # 1  

consensusID : consensus_820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence
                              [GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTGCAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACACTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTTTTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATGTCAGTCCANNCGAGACACCTGAACTCAGT]

[+] EMBL BX619779             [GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTGCAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACACTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTTTTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATGTCAGTCCANNCGAGACACCTGAACTCAGT]


>consensus_820#0 GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACT TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA CCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTG CAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACA CTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGT ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGC GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTT TTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATG TCAGTCCANNCGAGACACCTGAACTCAGT



consensusID : consensus_820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTGGTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGTTTGCG]

[+] EMBL AL933663             [GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTGGTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGTTTGCG]


>consensus_820#1 GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAAC TGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGA CACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTG GTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAG CACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAA GCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGG CCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCG AGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCA GACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGT TTGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_820#0      GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACT 60
consensus_820#1      ---------------GGCCGAGGGTACGATAAT--AAGGTAGATTACAGATTTTAAA-CT 42
                                           * ********   *********** ********** **

consensus_820#0      TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC 120
consensus_820#1      TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC 102
                     ************************************************************

consensus_820#0      AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA 180
consensus_820#1      AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA 162
                     ************************************************************

consensus_820#0      CCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTG 240
consensus_820#1      CCGGCAAGTTGTTTC--------------------------------------------- 177
                     ***************                                             

consensus_820#0      CAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACA 300
consensus_820#1      ---------------------------------------------CTGGTGG-------- 184
                                                                  * *****        

consensus_820#0      CTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGT 360
consensus_820#1      --------------CAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGT 230
                                   ******************* **************************

consensus_820#0      ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGC 420
consensus_820#1      ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAA-GC 289
                     *******************************************************   **

consensus_820#0      GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTT 480
consensus_820#1      GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTT 349
                     ********************************************* **************

consensus_820#0      TTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATG 540
consensus_820#1      TTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTT-GCATTTTGCTACTACCGTACATG 408
                     ************ *************** ******* ***********************

consensus_820#0      TCAGTCCANNCGAGACACCTGAACTCAGT------------------------------- 569
consensus_820#1      TCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTA 468
                     ********  *******************                               

consensus_820#0      ------------------------------------------------------------
consensus_820#1      CTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGT 528
                                                                                 

consensus_820#0      -----------------
consensus_820#1      CTTTATGCATGTTTGCG 545
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)