These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTGCAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACACTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTTTTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATGTCAGTCCANNCGAGACACCTGAACTCAGT] [+] EMBL BX619779 [GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTGCAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACACTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTTTTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATGTCAGTCCANNCGAGACACCTGAACTCAGT] consensusID : consensus_820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTGGTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGTTTGCG] [+] EMBL AL933663 [GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTGGTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGTTTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_820#0 GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACT 60 consensus_820#1 ---------------GGCCGAGGGTACGATAAT--AAGGTAGATTACAGATTTTAAA-CT 42 * ******** *********** ********** ** consensus_820#0 TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC 120 consensus_820#1 TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC 102 ************************************************************ consensus_820#0 AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA 180 consensus_820#1 AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA 162 ************************************************************ consensus_820#0 CCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTG 240 consensus_820#1 CCGGCAAGTTGTTTC--------------------------------------------- 177 *************** consensus_820#0 CAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACA 300 consensus_820#1 ---------------------------------------------CTGGTGG-------- 184 * ***** consensus_820#0 CTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGT 360 consensus_820#1 --------------CAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGT 230 ******************* ************************** consensus_820#0 ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGC 420 consensus_820#1 ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAA-GC 289 ******************************************************* ** consensus_820#0 GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTT 480 consensus_820#1 GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTT 349 ********************************************* ************** consensus_820#0 TTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATG 540 consensus_820#1 TTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTT-GCATTTTGCTACTACCGTACATG 408 ************ *************** ******* *********************** consensus_820#0 TCAGTCCANNCGAGACACCTGAACTCAGT------------------------------- 569 consensus_820#1 TCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTA 468 ******** ******************* consensus_820#0 ------------------------------------------------------------ consensus_820#1 CTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGT 528 consensus_820#0 ----------------- consensus_820#1 CTTTATGCATGTTTGCG 545 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||