These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1282 fasta sequence [TAGCCACAGTTCACCACTACTCTTTGCACGCGTCTGTTGCTCTTCAATTTTCAATCAACAATTGAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAG-GGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCAC-GACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTTACTGGCACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACTGTTTGGCGTAAACTACGGTGTTCTTCAGGGTTAGAGGGTGACCAATCATTGATGAAGCATAATGAACTGTTTTGCCGCAAAAAGTATGCGCGCACTGTTATTCGTTGAACAGCGAAGTAAAACAAAAGTGGAATTGAATTTGAATAA] [+] EMBL CNS09R9Z [TAGCCACAGTTCACCACTACTCTTTGCACGCGTCTGTTGCTCTTCAATTTTCAATCAACAATTGAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAG GGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGA GGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAGCCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGCGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCATGTGCCGGGAG ] [+] EMBL CNS09OF3 [ AACAATTGAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAG GGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGCAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGAAAACGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACAAGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTTTCGATCATGGTAACACCCGTATCGTTTGA ] [+] EMBL CNS08VWI [ GAATCTGTGACCATCAACCTTTGAAAACAAAGCAAAGCGTTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGCCAAACCACCCACAACACCATGGCCAACGAAATGATGGACACCGTCCCCGTCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCACCGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCGAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTACTTGCCGCGGCTGGCAGCCCCCCAGGAACAATCGGAGACGGGTGCGACGATGGATACGTCCACGCAAAACGATATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTGCTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTTCGGCAC GAGAAACTTTGTGGCCCGGGTG ] [+] EMBL CNS095A6 [ CAACACCACCACCTCCTCCTCTGTTGTCGTTAATAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCACCGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGg ] [-] EMBL CNS095A7 [ CTCTGTTGTCGCCAACAACCAACTCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCACCGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCGAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTACTTGCCGCGGCTGGCAGCCCCCCAGGAACAATCGGAGACGGGTGCGACGATGGATACGTCCACGCAAAACGATATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTGCTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTAAGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCAACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCACGGACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTCACTGGCACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACTGTTgtg ] [-] EMBL CNS09RA0 [ TCCAGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTAAGTGGCGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCCACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGTTCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGGCGACGCTACTGTCGATCATGGTTACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCACGGACGAACTTTGTGGCCCGGGTGACGGTAGGCGAACAATCGTTTACTGGCACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACTGTTTGGCGTAAACTACGGTGTTCTTCAGGGTTAGAGGGTGACCAATCATTGATGAAGCATAATGAACTGTTTTGCCGCAAAAAGTATGCGCGCACTGTTATTCGTTGAACAGCGAAGTAAAACAAAAGTGGAATTGAATTTGAATAA] [-] EMBL CNS09OF4 [ AGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAATCAGTGGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTTGCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAACCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAAAGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATCAATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGGACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGATCTCGTTTGCGCTGTACAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAAT ] [-] EMBL CNS08VWJ [ AAAACGATTTGGGGGCAGGGGGGGACCCGGATGCTAAGACAAAACTGCTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTAAAAACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGAAAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTAAATCCAACCAGCCACCATCCGGCGACGCAACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCGTGAGTCCGGCACGGACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTTACTGGCCCGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGGAGCGTGCAAGGCACTGTTTGGCCTAAACTACGGCGTTCTTCAGGGTTAGGGGGTGACCAATCATTGATGAAGCA ] consensusID : consensus_8202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [AGAATCGGCACGAGGTNNTACAATCAACAATTGAATCTGTGCACCATCAAACCCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCGACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGGCAAACCAGCGCACAACAACATGGCCAACGAAATGATGGACACCGTCCCCGTGCTCATA] [+] EMBL BX469388 [AGAATCGGCACGAGGTNNTACAATCAACAATTGAATCTGTGCACCATCAAACCCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAACGGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGCCAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCGACACACCTACAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCATATCATCCGGGCAAACCAGCGCACAACAACATGGCCAACGAAATGATGGACACCGTCCCCGTGCTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8202#0 TAGCCACAGTTCACCACTACTCTTTGCACGCGTCTGTTGCTCTTCAATTTTCAATCAACA 60 consensus_8202#1 -------------------------------AGAATCGGCACGAGGTNNTACAATCAACA 29 ** * * ********* consensus_8202#0 ATTGAATCTGTG-ACCATCAA--CCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAAC 117 consensus_8202#1 ATTGAATCTGTGCACCATCAAACCCTTTGAAAACAAAGCAAAGGGTGTCGCTTCGTGAAC 89 ************ ******** ************************************* consensus_8202#0 GGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGC 177 consensus_8202#1 GGTGAAATTACAGTGATAATGGATATCGTGCATCCGTTCGGTGTTCCCCGCGAGGGAGGC 149 ************************************************************ consensus_8202#0 CAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGC-ACACACCTA 236 consensus_8202#1 CAGTCGTCCAGCAGCCAGCCCTATTACCCCGGGGCTCCCCTTTTTCCCGCGACACACCTA 209 ************************************************** ********* consensus_8202#0 CAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCAT 296 consensus_8202#1 CAACGCCAATAGGAGCAGTACGAACGGCGGCACGGCCGGCAGCATCTTCGGAGGAGGCAT 269 ************************************************************ consensus_8202#0 ATCATCCGGCCAAACCACC-CACAACACCATGGCCAACGAAATGATGGACACCGTCCCCG 355 consensus_8202#1 ATCATCCGGGCAAACCAGCGCACAACAACATGGCCAACGAAATGATGGACACCGTCCCCG 329 ********* ******* * ******* ******************************** consensus_8202#0 TCCTCATAAGCACACCCAACACCACCACCTCCTCCTCTGTTGTCGCCAACAACCAACTCC 415 consensus_8202#1 TGCTCATA---------------------------------------------------- 337 * ****** consensus_8202#0 AGCTGAAACCGGTTCTCGGTAAGCTGAATAGAAAAGCGGCCAAGGGAGGAGGAAGTCAGT 475 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 GGTGCAAGCTGGCCCATCGGGCGCAACCCATGAGCGCATTCGACGCGCTGTGCAATCTTT 535 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 GCGGCGCGAACAGCTCGGAATTCAACGTCCGCACCAACGGGCACGAGACGATGGTGCAAA 595 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 CCATCTTCAACGCGATGCAGTACCAAGCGGTGGCACCAAACGAATTCCTCGCCAAGGAAA 655 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 AGGTGTCCGAGGAGGTGCTGCGTGACATTTATTTGCCGCGGCTGGCAGCCCACAAGGATC 715 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 AATCGGAGACGGGCGCGATGATGGATACGTCCACGCAAAACGGTATGGAGGCAGAGGAGG 775 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 ACCCGGATGCTAAGACAACACTATTGTTGGCGCAGAACCTGGTCTCGTTTGCGCTGTACA 835 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 AACTGTTTGCCAAATGGAACGTGCAGCCAAAGCCGACAAAGGTGAAGGAACAACCATCGA 895 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 AAAATGGTGTGATCAGGTGCCGGGAGCAACTGCCGGTCAATCCAACCAGCCACCATCCGG 955 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 CGACGCTACTGTCGATCATGGTAACACCCGTATCGTTTGAGGATGTCGGCGAAACCGTCG 1015 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 TGAGTCCGGCACGACGAACTTTGTGGCCCGGGTGACGGTGGGCGAACAATCGTTTACTGG 1075 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 CACGGGGCAATCGAAAAAGGTGGCCCGTAAGATGGCAGCATCGGAAGCGTGCAAGGCACT 1135 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 GTTTGGCGTAAACTACGGTGTTCTTCAGGGTTAGAGGGTGACCAATCATTGATGAAGCAT 1195 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 AATGAACTGTTTTGCCGCAAAAAGTATGCGCGCACTGTTATTCGTTGAACAGCGAAGTAA 1255 consensus_8202#1 ------------------------------------------------------------ consensus_8202#0 AACAAAAGTGGAATTGAATTTGAATAA 1282 consensus_8202#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||