These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 974 fasta sequence [GGGCCAAGAATTCCGGCACGAGGGGTTTCTCGCACGGGAGCGTTGCATTCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAG-AAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCGACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAA-GCGCTGCTGCA-GCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCGAACAA-TCTCACCGTGGAGGCAAGCATGAAACAGGTCGCCCAGTACAACAAGGTCATATCGCACGTGTGGGACATCATCAGCAAGGCGAAGGAGGACTGGGAGAATGAATCGTCCACCCGGCCC-GGCATCCAGCAGACCAGCTCGATGGCGGACACGCAAGCGCTGGTGGCTGCCGTCGGGCTGGGCAATGGGTTGACCGCACCGGTGGGTCCGCCGACCGGGGCGGGCGTAATGATTCCACCCGCGATCCGGCAGGGCTCGCCGATGAGTGCCGTTTCCCCGTCCGGCAATGCGCCGATGGGCAAAATGCCGTCCGGCATCAAGACAAACATCAAGTCCGCCAACCAGGTGCATCCGTACCGTTAGCAGTGTACGCTCTCTGTGAAATGCGCATTAGCTTGTATTGAAAATAAACACAAAATCTTCTATCTTTACTCTAAAAAACA] [+] EMBL BX468467 [GGGCCAAGAATTCCGGCACGAGGGGTTTCTCGCACGGGAGCGTTGCATTCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAG AAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCGACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAA GCGCTGCTGCA GCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCGAACAA TCTCACCGTGGAGGCAAGCATGAAACAGGTCGCCCAGTACAACAAGGTCATATCGCACGTGTGGGACATCATCAGCAAGGCGAAGGAGGACTGGGAGAATGAATCGTCCACCCGGCCCGGGCATCC ] [+] EMBL BX469163 [ gatcGCACGAGGTGTTTCTCGCACGGGAGCGTTGCATTCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAG AAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCGACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAAGGCGCTGCTGCAGGCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCGAACAAGTCTCACCGTGGAGGCAAGCATGAAACAGGTCGCCCAGTACAACAAGGTCATATC ] [+] EMBL BM602876 [ GCGTTGCATTCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAG AAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCGACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAA GCGCTGCTGCA GCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCGAACAA TCTCACCGTGGAGGCAAGCATGAAACAGGTCGCCCAGTACAACAAGGTCATATCGCACGTGTGGGACATCATCAGCAAGGCGAAGGAGGACTGGGAGAATGAATCGTCCACCCGGCCC GGCATCCAGCAGACCAGCTCGATGGCGGACACGCAAGCG ] [+] EMBL BX619055 [ GTTGCATTCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAG AAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCGACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAA GCGCTGCTGCA GCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCGAACAA TCTCACCGTGGAGGCAAGCATGAAACAGGTCGCCCAGTACAACAAGGTCATATCGCACGTGTGGGACATCATCAGCAAGGCGAAGGAGGACTGGGAGAATGAATCGTCCACCCGGCCC GGCATCCAGCAGACCAGCTCGATGGCGGACACGCAAGCGCTGGTGGCTGCCGTCGGGCTGGGCAATGGGTTGACCGCACCGGTGGGTCCGCCGACCGGGGCGGGCGTAATGATTCCACCCGCGATCCG ] [+] EMBL BX610086 [ TCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAG AAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCGACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAA GCGCTGCTGCA GCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCGAACAA TCTCACCGTGGAGGCAAGCATGAAACAGGTCGCCCAGTACAACAAGGTCATATCGCACGTGTGGGACATCATCAGCAAGGCGAAGGAGGACTGGGAGAATGAATCGTCCACCCGGCCC GGCATCCAGCAGACCAGCTCGATGGCGGACACGCAAGCGCTGGTGGCTGCCGTCGGGCTGGGCAATGGGT ] [+] EMBL CNS09BNT [ TGTTTTAAACTGTGAGAAAGGATCCACCAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGCTGGACATGCTGCTGGAAGCTGTCCTGAACCGGCTGAACGATCTGAAACATTCGATTGGCGTGATGATACACCGACTGGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCTGAGCGGGACGAG GCGCTGCTGCA GCTAACTGAGGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCAAACAA TCTCACCGTGGAGGCAAGCATGAAACAGGTCGCCCAGTACAACAAGGTCATATCGCACGTGTGGGACATCATCAGCAAGGCGAAGGAGGACTGGGAGAATGAATCGTCCACCCGGCCC GGCATCCAGCAGACCAGCTCGATGGCGGACACGCAAGCGCTGGTGGCTGCCGTCGGGCTGGGCAACGGGTTGACCGCAAAAAAAGGTCCGCCGCCCGG ] [+] EMBL AGA285751 [ AACTGTGAG AAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCGACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAA GCGCTGCTGCA GCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGACCCGGGCGCCGAAAGCCGGCAG ] [-] EMBL AGA284444 [ GGGCAATGGGTTGACCGCACCGGTGGGTCCGCCGACCGGGGCGGGCGTAATGATTCCACCCGCGATCCGGCAGGGCTCGCCGATGAGTGCCGTTTCCCCGTCCGGCAATGCGCCGATGGGCAAAATGCCGTCCGGCATCAAGACAAACATCAAGTCCGCCAACCAGGTGCATCCGTACCGTTAGCAGTGTACGCTCTCTGTGAAATGCGCATTAGCTTGTATTGAAAATAAACACAAAATCTTCTATCTTTACTCTAAAAAACA] consensusID : consensus_8203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [AATNGCCGAGGTCACGGGAGCGTTGCATTCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAGAAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCTGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCTGACTCGAGACGGAATACGAGACGATTAACTGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAAGCGCTGCTGCAGCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGANCCGGGCGCGGAAAGCCGGCAGGCGGACACCGAAGCGAAGGCGAACAATCTCACCGTGGAGTGCCAAGCCATTGAACACAGGTCGCCCAGTACAACAAGGGTTCATATTCGCACGTGTTGGGACATCATCAGCAAGGCGAANNGAGGAC] [+] EMBL AL931287 [AATNGCCGAGGTCACGGGAGCGTTGCATTCTCTATTTCCTACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAGAAGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTGGAAGCTGTCCTGAACCTGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCTGACTCGAGACGGAATACGAGACGATTAACTGCCCACGTTTCTGGACAACTTTGCACTAATATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGCGCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAAGCGCTGCTGCAGCTAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGAAGCCGGANCCGGGCGCGGAAAGCCGGCAGGCGGACACCGAAGCGAAGGCGAACAATCTCACCGTGGAGTGCCAAGCCATTGAACACAGGTCGCCCAGTACAACAAGGGTTCATATTCGCACGTGTTGGGACATCATCAGCAAGGCGAANNGAGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8203#0 GGGCCAAGAATTCCGGCACGAGGGGTTTCTCGCACGGGAGCGTTGCATTCTCTATTTCCT 60 consensus_8203#1 --------------------AATNGCCGAGGTCACGGGAGCGTTGCATTCTCTATTTCCT 40 * * **************************** consensus_8203#0 ACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAGA 120 consensus_8203#1 ACCAAAAAATCTTGATTTAAGTCCCATTCCCGAGCAATGCTAGTGTTTTAAACTGTGAGA 100 ************************************************************ consensus_8203#0 AGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTG 180 consensus_8203#1 AGGATTCAACAAACCAAACGCAACATGCAGCGCGAGGAAAAGCAGTTGGACATGCTGCTG 160 ************************************************************ consensus_8203#0 GAAGCTGTCCTGAACC-GTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACC- 238 consensus_8203#1 GAAGCTGTCCTGAACCTGTCTGAACGACCTGAAACATTCGATTGGCGTGATGATACACCT 220 **************** ****************************************** consensus_8203#0 GACTCGAGACGGAATACGAGACGATTAACTGGCCCACGTTTCTGGACAACTTTGCACTAA 298 consensus_8203#1 GACTCGAGACGGAATACGAGACGATTAACTG-CCCACGTTTCTGGACAACTTTGCACTAA 279 ******************************* **************************** consensus_8203#0 TATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGC 358 consensus_8203#1 TATCCAGCCATCTCACTGGGTTGATGAAAATCCTAAGCACGGAAATCGGCACACCACTGC 339 ************************************************************ consensus_8203#0 GCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAAGCGCTGCTGCAGC 418 consensus_8203#1 GCAATCTGACCGTGCTGCCGCTGATGCTAACGCCCGAGCGGGACGAAGCGCTGCTGCAGC 399 ************************************************************ consensus_8203#0 TAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGA 478 consensus_8203#1 TAACCGAAGGCCGTGTGCCGATCTTTTCGCACGATCTCGCTCCGGACTATCTGCGCACGA 459 ************************************************************ consensus_8203#0 AGCCGGACCCGGGCGCGGAAAGCCGGCAGGCGGCACACGAAGCGAAGGCGAACAATCTCA 538 consensus_8203#1 AGCCGGANCCGGGCGCGGAAAGCCGGCAGGCGGACACCGAAGCGAAGGCGAACAATCTCA 519 ******* ************************* *********************** consensus_8203#0 CCGTGGAGG--CAAGCA--TGAA-ACAGGTCGCCCAGTACAACAAGG--TCATAT-CGCA 590 consensus_8203#1 CCGTGGAGTGCCAAGCCATTGAACACAGGTCGCCCAGTACAACAAGGGTTCATATTCGCA 579 ******** ***** **** *********************** ****** **** consensus_8203#0 CGTGT-GGGACATCATCAGCAAGGCGAAGG-AGGACTGGGAGAATGAATCGTCCACCCGG 648 consensus_8203#1 CGTGTTGGGACATCATCAGCAAGGCGAANNGAGGAC------------------------ 615 ***** ********************** ***** consensus_8203#0 CCCGGCATCCAGCAGACCAGCTCGATGGCGGACACGCAAGCGCTGGTGGCTGCCGTCGGG 708 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 CTGGGCAATGGGTTGACCGCACCGGTGGGTCCGCCGACCGGGGCGGGCGTAATGATTCCA 768 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 CCCGCGATCCGGCAGGGCTCGCCGATGAGTGCCGTTTCCCCGTCCGGCAATGCGCCGATG 828 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 GGCAAAATGCCGTCCGGCATCAAGACAAACATCAAGTCCGCCAACCAGGTGCATCCGTAC 888 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 CGTTAGCAGTGTACGCTCTCTGTGAAATGCGCATTAGCTTGTATTGAAAATAAACACAAA 948 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 ATCTTCTATCTTTACTCTAAAAAACA 974 consensus_8203#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||