|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1333 fasta sequence
[AAGTAAAGAT-AAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAAC-AAAAAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACAAATTCAAAACA-CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATAGAGCAGTTAGTTCGGTGTACGTACGATCCAATAAAACAAAACAACAAACACATGGAACATGGAATGAAATCTCCCAACAAAAACAAATAGACAAGTGGCTACAGCTGCCGATATGATGATGCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTAATACACGTGTGGAGGAAGGCATTATTCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGCAGTGAGGAACAGGCATTTGTCCCCCACGTGTTCAAAGGGCGCGCCCTCACGTGCTCATAGCAAAACAATAGCAAATACAAACAAAAATGCTACACTCTAACCCCTCACAAAACAAACACACATACAATTCTATATATGTATGGATGCATACTGCAAAACACAAACGTTATGCTGGCTGAAAGTGATCGATTAGTGAATAAAGGTATTAACAAAGTGTCTCATAAAAAA]
[+] EMBL AGA285099 [AAGTAAAGAT AAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAAC AAAAAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTAT ]
[+] EMBL BM608609 [ ccgAAGATAAAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAAC AAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCTACTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAAAGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAGGGTGAGCGTCCTAATTATTGTGCATGGAAAATCCCGAAATTGGGATGTTTAAACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACCGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGCGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACACGCTGCATCCATTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCG ]
[+] EMBL BX617529 [ AAACAAAAAAAAAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGATTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACTTATATAAAAGACACAAAAACAATTCCAAACACCCGTATTTACATTTCTACAATGCAAAAGTT ]
[+] EMBL BX621932 [ CCTTAAAGAAAAACAAAACACAAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACAAATTCAAAACA CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACNATGAGTAATAGAGCAGTTAGTTCGGTGTACGTACGA ]
[+] EMBL BX609425 [ ACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAGGCATGGGGTGTGCGTAGTGGGGGGTTTGCAGGTGGAAACAAAGGGAAGAGAGAAGTGATAATAAGGACTCGCTGCATCCTTTCCCGATCCTTTCCTCACTGCTCCCCCTCCTCCTGTTTGTATCTGTGCTCTTGCGTGTTATTAACTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACAAATTCAAAACA CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATAG ]
[+] EMBL BX614179 [ ACAGAAGCGAAAGCAAATGTGTTTGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCTAATAATTGTGCATGAACAAAATCGAAATTAGGATGATTATACTGTTGCGCTTCTTATTGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGACACATGTCGTTGTGTTGCGTAAAAATTAAGTAAAGTAAGCGATTTTCCCGTGTGCGTGATGGCTTCACGTGTTTAGCGCGAGTTAACCTGCCCAAAGCATGGGG ]
[+] EMBL BM585100 [ ccgCTTGATGCAAATTCGAAAGCAAAACGATTCTATATATATATACACACACATATATAAAAGACACAAAACTAATTCAAAACA CCGTATTTACATTTCTACAATGCAAAAGTTTTATTTAAAAAAATATTACGTGATAAGGCAAATTCTTATTTGTTTTAAGTAACTATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATAGAGCAGTTAGTTCGGTGTACGTACGATCCAATAAAACAAAACAACAAACACATGGAACATGGAATGAAATCTCCCAACAAAAACAAATAGACAAGTGGCTACAGCTGCCGATATGATGATGCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTAATACACGTGTGGAGGAAGGCATTATTCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGCAGTGAGGAACAGGCATTTGTCCCCCA ]
[-] EMBL AGA283808 [ ATATGATGATGCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTAATACACGTGTGGAGGAAGGCATTATGCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGCAGTAAGGAACAGGCATTTGTCCCCCACGTGTTCAAAGGGCGCGCCCTCACGTGCTCATAGCAAAACAATAGCAAATACAAACAAAAATGCTACACTCTAACCCCTCACAAAACAAACACACATACAATTCTATATATGTATGGATGCATACTGCAAAACACAAACGTTATGCTGGCTGAAAGTGATCGATTAGTGAATAAAGGTATTAACAAAGTGTCTCATAAAAAA]
consensusID : consensus_8208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence
[TCAGCAGACTCCCCCGACGGTTAACAAATCGAAATTAGGATGACTTAAACTGTTGCGCTTCTTATAGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGGACACATGTCGTATGTGTTGCGTAAAAATTANGTANCAGTAAGCGATNTTTCCCGTGTGCGCGATAGGCTATCAGCGCGAGTTAACCTGNACCAAGGCATGGGGTGTGTAGTACTAGGGGGGTAANGCAGGTGGAAACAANAGGGAAGAGAGCAAGTGATAATAAGGACACCGCTGACATCACTATATCCCGCATCCTATATCCTCACTGGATACCACCCTACCTCCTAGTATCGTATACTGTGCCTCTNTGGCGTAGTNNATCNAAACTATGATGCAAATTCGAAAGCAAACACGATNCTCATATATATACACACACATATACTCAAACGAAACAAACACCANNNTTCCCCAAAAACCGTAATANANCACTNTTCTACNCACTCGGCACCACGTCTCCCNTCCNCACACACNACTCNTTCCCCGCTGATCAACGGGCACACTTCCTCTNNTCACGTACACAGTACACTANACTGCCGCCCTGNAANCAGGGCGCNCCGTCGCGCTCACACCGCCCCGCGCANACGCNACCAANAAGNCANTTCCATTAGAAACCACAACATNTGGAACGGTCANACTTTAAGGCAANAACCAAGGACAAAGCNACACCAGGGGATGTTNACCCAGGTAACNCGCAGTTCCCACNANTCAAAACACAACAANACAACAACCAACCTCACACAACCCACCACTGGCACAANCCACATTNGGGACNCTCNGGCACNCATGCCCACCNCAACACANAAACNAACAACACGCACCTCACGACACCCCCCCG]
[+] EMBL AL929933 [TCAGCAGACTCCCCCGACGGTTAACAAATCGAAATTAGGATGACTTAAACTGTTGCGCTTCTTATAGCTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGGACACATGTCGTATGTGTTGCGTAAAAATTANGTANCAGTAAGCGATNTTTCCCGTGTGCGCGATAGGCTATCAGCGCGAGTTAACCTGNACCAAGGCATGGGGTGTGTAGTACTAGGGGGGTAANGCAGGTGGAAACAANAGGGAAGAGAGCAAGTGATAATAAGGACACCGCTGACATCACTATATCCCGCATCCTATATCCTCACTGGATACCACCCTACCTCCTAGTATCGTATACTGTGCCTCTNTGGCGTAGTNNATCNAAACTATGATGCAAATTCGAAAGCAAACACGATNCTCATATATATACACACACATATACTCAAACGAAACAAACACCANNNTTCCCCAAAAACCGTAATANANCACTNTTCTACNCACTCGGCACCACGTCTCCCNTCCNCACACACNACTCNTTCCCCGCTGATCAACGGGCACACTTCCTCTNNTCACGTACACAGTACACTANACTGCCGCCCTGNAANCAGGGCGCNCCGTCGCGCTCACACCGCCCCGCGCANACGCNACCAANAAGNCANTTCCATTAGAAACCACAACATNTGGAACGGTCANACTTTAAGGCAANAACCAAGGACAAAGCNACACCAGGGGATGTTNACCCAGGTAACNCGCAGTTCCCACNANTCAAAACACAACAANACAACAACCAACCTCACACAACCCACCACTGGCACAANCCACATTNGGGACNCTCNGGCACNCATGCCCACCNCAACACANAAACNAACAACACGCACCTCACGACACCCCCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8208#0 AAGTAAAGATAAAAAAATGTGCGACGGTACAGATGAAAAATGGGGATTTAAAACAAAAAA 60
consensus_8208#1 ------------------------------------------------------------
consensus_8208#0 AAAACAACGGGGAAACAAGTTTAAGTGATACAAAATTGGGTACAAATTATTATAACACGA 120
consensus_8208#1 ------------------------------------------------------------
consensus_8208#0 TTGGAAACAACAAGTAACCAAAAAAGGAGGAAAAACTCACCTTAAAGAAAAACAAAACAC 180
consensus_8208#1 ------------------------------------------------------------
consensus_8208#0 AAAAATTAAGAAACTAAAACCCCTTTTTGTCATTGCAACAGAAGCGAAAGCAAATGTGTT 240
consensus_8208#1 ------------------------------------------------------------
consensus_8208#0 TGCGCCGGGCGTATATATTCGTAGCGCTTGTATTTGATGTCTTAAAAAGGTGAGCGTCCT 300
consensus_8208#1 ---------------------------------------------TCAGCAGACTCCCCC 15
** ** **
consensus_8208#0 AATAATTGTGCATGAACAAAATCGAAATTAGGATGA-TTATACTGTTGCGCTTCTTATTG 359
consensus_8208#1 GACGGTT-------AACAAA-TCGAAATTAGGATGACTTAAACTGTTGCGCTTCTTATAG 67
* ** ****** *************** *** ***************** *
consensus_8208#0 CTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAG-ACACATGTCGT-TGTGTTG 417
consensus_8208#1 CTTTTGCTTTATTGCCGTTGTTCGGTTAAAACACACACAGGACACATGTCGTATGTGTTG 127
**************************************** *********** *******
consensus_8208#0 CGTAAAAATTAAGTAA-AGTAAGCGATTTT-CCCGTGTGCGTGATGGCTTCACGTGTTTA 475
consensus_8208#1 CGTAAAAATTANGTANCAGTAAGCGATNTTTCCCGTGTGCGCGATAGGCTA------TCA 181
*********** *** ********** ** ********** *** * * * *
consensus_8208#0 GCGCGAGTTAACCTGC-CCAAGGCATGGGGTGTGC-GTAGTGGGGGGTT--TGCAGGTGG 531
consensus_8208#1 GCGCGAGTTAACCTGNACCAAGGCATGGGGTGTGTAGTACTAGGGGGGTAANGCAGGTGG 241
*************** ***************** *** * ***** * ********
consensus_8208#0 AAACAAA-GGGAAGAGAG-AAGTGATAATAAGGAC-TCGCTG----CATCCTTTCCCG-A 583
consensus_8208#1 AAACAANAGGGAAGAGAGCAAGTGATAATAAGGACACCGCTGACATCACTATATCCCGCA 301
****** ********** **************** ***** ** * ***** *
consensus_8208#0 TCCTTT--CCTCACTG----CTCCCCCTCCTCCTGTT--TGTAT-CTGTGCTCTTGCG-T 633
consensus_8208#1 TCCTATATCCTCACTGGATACCACCCTACCTCCTAGTATCGTATACTGTGCCTCTNTGGC 361
**** * ******** * *** ****** * **** ****** * *
consensus_8208#0 GTTATTAACTT-------GATGCAAATTCGAAAGCAAA-ACGATTCTATATATATATACA 685
consensus_8208#1 GTAGTNNATCNAAACTATGATGCAAATTCGAAAGCAAACACGATNCT-CATATATATACA 420
** * * ******************** ***** ** ***********
consensus_8208#0 CACACATATATAAAAGACACAAAACAAATTCAAAACACCGTATTTACATTTCTACAATGC 745
consensus_8208#1 CACACATATACTCAA---ACGAAACAAACAC----CANNNTTCCCCAAAAACCGTAATAN 473
********** ** ** ******* * ** * * * ***
consensus_8208#0 AAAAGTTTTATTTAAAAAAATATTAGGTGATAAGGCAAATTCTTATTTGTTTTAAGTAAC 805
consensus_8208#1 ANCACTNTTCT------ACNCACTCGGCACCACG-----TCTCCCNTCCNCACACACNAC 522
* * * ** * * * * ** * * * * * **
consensus_8208#0 TATGCGCCTGCTAGGGGCGTGGTACAGCCGGCAGTACAAGATCATGAACAATGAGTAATA 865
consensus_8208#1 TCNTTCCCCGCTGATCAACGGGCACACTT-----CCTCTNNTCACGTACACAGTACACTA 577
* ** *** ** *** *** * *** * * **
consensus_8208#0 GAGCAGTTAGTTCGGTGTACGTACGATCCAATAAAACAAAACAACAAACACATGGAACAT 925
consensus_8208#1 NA----CTGCCGCCCTGNA----------ANCAGGGCGCNCCGTCGCGCTCACACCGCCC 623
* * * ** * * * * * * * ** *
consensus_8208#0 GGAATGAAATCTCCCAACAAAAACAAATAGACAAGTGGCTACAGCTGCCGATATGATGAT 985
consensus_8208#1 CGCGCANACGCNACCAANAAGN-CANTTCCATTAGAAACCACAACATNTGGAACGGTCAN 682
* * * **** ** ** * * ** * *** * * * * * *
consensus_8208#0 GCTACTACTACTACTGCTAGTGCTACTGTTGCCACTACTACTTCTACTACTGCCCCTTTA 1045
consensus_8208#1 ACT-TTAAGGCAANAACCAAGGACAAAGCNAC-ACCAGGGGATGT----TNACCCAGGTA 736
** ** * * * * * * * * ** * * * *** **
consensus_8208#0 ATACACGTGTGGAGGAAGGCATTATTCGCTCTGGTATAAACAGCTTGGCGTTAAAGAGGC 1105
consensus_8208#1 ACNC--------------GCAGTTCCCACNANTCAAAACACAACAANACAACAACCAACC 782
* * *** * * * * * *** * * ** * *
consensus_8208#0 AGTGAGGAACAGGCATTTGTCCCCCACGTGTTCAAAGGGCGCGCCCTCACGTGCTCATAG 1165
consensus_8208#1 TCACACAACCCACCACTGGCACAANCCACATTNGGGACNCTCNGGCACNCATGCCCACCN 842
* * * ** * * * * ** * * * * * *** **
consensus_8208#0 CAAAACAATAGCAAATACAAACAAAAATGCTACACTCTAACCCCTCACAAAACAAACACA 1225
consensus_8208#1 CAACACANAAACNAACA-----ACACGCACCTCACGACACCCCCCCG------------- 884
*** *** * * ** * * * * *** * **** *
consensus_8208#0 CATACAATTCTATATATGTATGGATGCATACTGCAAAACACAAACGTTATGCTGGCTGAA 1285
consensus_8208#1 ------------------------------------------------------------
consensus_8208#0 AGTGATCGATTAGTGAATAAAGGTATTAACAAAGTGTCTCATAAAAAA 1333
consensus_8208#1 ------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||