These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 976 fasta sequence [CCACAAACAAAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGTCAAACGGTCGGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG-ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC-GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC-CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAGGCCACATTTCCCCGAGCTTTTGTTTT] [-] EMBL CNS093X1 [CCACAAACAAAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGTCAAACGGTCGGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGAAACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAAAAAAAAAAAGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGTTCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCACAGCTACAACAAAaa ] [-] EMBL CNS09C6Z [ GCGGAATTCCTCGAGCACTGTTGGCCTACTGGTCAAACGGTCGGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATTTTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGTTCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTTAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCT ] [+] EMBL CNS096L9 [ CTGGTC AACGACCGGTGTGGT GGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAGCACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAGGCCACATTTCC ] [+] EMBL CNS093X0 [ GGTGTGGTCGGTGTGGTT AAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGTTTTTTTTTTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTTTTGTTTT] [+] EMBL CNS09C6Y [ TGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGG AAAAAAAAAAAAAAAGGCCACA ] [-] EMBL CNS096LA [ AAGCCGGATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGC GTTTAA ] [+] EMBL BM613570 [ ccgATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAACAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTAATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTTCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTGTGAGCGTGAAATTGGCAAACTGGAAGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATA ] [+] EMBL BM651204 [ TCCGGTGTGAGCGTGAAATTGGCAAACTGGAAGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAATCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGGCATCTTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAA ] consensusID : consensus_8215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [ACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTGTGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAATTTTCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGCCCTCCCCCCCCC] [+] EMBL CNS08JUX [ACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTGTGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAATTTTCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGCCCTCCCCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8215#0 CCACAAACAAAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGTCAAACGGTC 60 consensus_8215#1 ------------------------------------------------------------ consensus_8215#0 GGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGA 120 consensus_8215#1 ------------------------------------------------------------ consensus_8215#0 AATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTT 180 consensus_8215#1 ------------------------------------------------------------ consensus_8215#0 GAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG 240 consensus_8215#1 ------------------------------------------------------------ consensus_8215#0 ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGA 300 consensus_8215#1 ------------------------------------------------------------ consensus_8215#0 CACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGA 360 consensus_8215#1 ----------------------ACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGA 38 ************************************** consensus_8215#0 ATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCA 420 consensus_8215#1 ATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCA 98 ************************************************************ consensus_8215#0 TTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCT 480 consensus_8215#1 TTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCT 158 ************************************************************ consensus_8215#0 TCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCT 540 consensus_8215#1 TCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCT 218 ************************************************************ consensus_8215#0 CCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTATGAGCGTG 600 consensus_8215#1 CCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTGTGAGCGTG 278 *************************************************** ******** consensus_8215#0 AAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCG 660 consensus_8215#1 AAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCG 338 ************************************************************ consensus_8215#0 TTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGT 720 consensus_8215#1 TTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGT 398 ************************************************************ consensus_8215#0 ACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTG 780 consensus_8215#1 ACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTG 458 ************************************************************ consensus_8215#0 AACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGT 840 consensus_8215#1 AACCGTTCGGTGGATTCATCAACTTCCCGACGAAATTTTCCAATTCCATCTCGGTGGTGT 518 *********************************** * ********************* consensus_8215#0 TCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACG 900 consensus_8215#1 TCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACG 578 ************************************************************ consensus_8215#0 CTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAA----------- 949 consensus_8215#1 CTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 638 ************************************************* consensus_8215#0 -GGCCACATTTCCCCGAGCTTTTGTTTT- 976 consensus_8215#1 AGGCCACATGTGCCCGCCCTCCCCCCCCC 667 ******** * **** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||