These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 856 fasta sequence [CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA-CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATGG] [+] EMBL BM585290 [CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGCACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAAGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCA ] [+] EMBL BM647697 [ ccGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGAACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCA ] [+] EMBL BM653416 [ ccgCGGTGTAGTACGAAGAGAGACGCACGGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCG ] [+] EMBL AGA284702 [ AGAGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTTGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATTCCGTTCCTGACCGA ] [+] EMBL AGA285811 [ ACCGGATTTTCGACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAAGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGGCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG ] [-] EMBL AGA284529 [ CGATTGCCNTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATG ] [-] EMBL AGA284507 [ AATTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACCGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCGGCACGGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATG ] [-] EMBL AGA283408 [ ATACCCCCGCTCGAATCGCTCGCCA CGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAGGACGAGACGCCGATGG] consensusID : consensus_8220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCGGCCGCGGTC] [+] EMBL BM655062 [CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAACACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCACCGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAACATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTTTTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTGTCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTGACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAACTTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCGCTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTGGCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTGGTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTATCCGCGCGTGTCGGCCGCGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8220#0 CCGGAAAATCGGAGGAGAAGCATTGCTCGCTTTTCTCGTCACGAAAGTTGGTGCGTGCGA 60 consensus_8220#1 ------------------------------------------------------------ consensus_8220#0 ACGGCTGAACCCCACAATCGATAGGGTAGTGTGAAGCGTGACACGGTGTAGTACGAAGAG 120 consensus_8220#1 ------------------------------------------------------------ consensus_8220#0 AGACGCACAGTTAACGTAAAGTTTTGCGCGAAGCAACAGCATCCGGAACCGGATTTTCGA 180 consensus_8220#1 ---------------------CCGCCCACGCGTCCGCAGCATCCGGAACCGGATTTTCAA 39 * ** * ********************** * consensus_8220#0 CACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCAC 240 consensus_8220#1 CACTTTGCTCGCGGACACGTTCGGAGCACCAACGCAGTGCGCCTTCCCATCCCGCTCCAC 99 ************************************************************ consensus_8220#0 CGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAAC 300 consensus_8220#1 CGCACACACAGATACGCAACGGTGAAGGAGAAGACAGAACACCCCGAGGAGGAATAAAAC 159 ************************************************************ consensus_8220#0 ATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTT 360 consensus_8220#1 ATGGCTGCCAGTGCGAGCGGTGATAAAGCTGCGGATGATTCACTCTATCCGATTGCTGTT 219 ************************************************************ consensus_8220#0 TTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTG 420 consensus_8220#1 TTGATCGATGAGCTGAAAAATGAAGATATTCAGCTCCGCCTAAACTCGATCAAGAAGCTG 279 ************************************************************ consensus_8220#0 TCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTG 480 consensus_8220#1 TCGACGATTGCCCTAGCACTCGGCGAAGAGCGGACGCGCAACGAGCTGATCCCGTTCCTG 339 ************************************************************ consensus_8220#0 ACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAAC 540 consensus_8220#1 ACCGAGTCCATCTACGACGAGGATGAGGTGCTGCTGGCACTGGCCGAGCAGCTCGGCAAC 399 ************************************************************ consensus_8220#0 TTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG 600 consensus_8220#1 TTTATCCCGCTGGTCGGCGGGCCCGAGTACGCGATGTATCTGATACCGCCGCTCGAATCG 459 ************************************************************ consensus_8220#0 CTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTG 660 consensus_8220#1 CTCGCCACGGTCGAGGAGACGGTGGTGCGCGAGAAGGCGGTCGAGTCGCTCCGTACCGTG 519 ************************************************************ consensus_8220#0 GCCGGCCAGCACAGCGCACAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGCCTG 720 consensus_8220#1 GCCGGCCAGCACAGCGCCCAGGATCTGGAGGTGCACCTGGTGCCGACGCTGCAGCGTCTG 579 ***************** ************************************** *** consensus_8220#0 GTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTAT 780 consensus_8220#1 GTGTCGGGCGACTGGTTCACATCGCGCACGTCCGCCTGCGGCCTGTTCTCCGTGTGCTAT 639 ************************************************************ consensus_8220#0 CCGCGCGTGTCTGCCGCGGTCAAGTCGGAGCTGCGCATCAACTTCCGCACGCTCTGCCAG 840 consensus_8220#1 CCGCGCGTGTCGGCCGCGGTC--------------------------------------- 660 *********** ********* consensus_8220#0 GACGAGACGCCGATGG 856 consensus_8220#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||