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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1269 fasta sequence
[AGCAGATCGGCACCAGGCACTNAGTGCGCAACATCTTCGTGACGCGCGCGCTCATCATCAGCTACGTGCGCCGGTTCTTCGACAACCTCGGCTTCCTCGAGGTGGAGACGCCGAT-ATGAACATGATACCGGGCGGCGCGACGGCCAAGCCGTTCATCACGCACCACAACGACCTGAACATGGATCTGTTTCTGCGCATCGCGCCCGAGCTGTACCTGAAGATGCTGACGGTCGGCGGGCTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCA-CAATCCCGAGTTTACCACGTGCGAGTTCTACA-TGGCGTACGCGGACTACAACGACATCATCGAC--ATC-ACGCA-GCAG--CTGCTCTCGGGCATGGTGCACGCGATCCACGGCTCGTACAAGGTCAAGTACCATCCGGACGGGCCGGAGGGCGACGAGTACGAGATCGACTTTACGCCCCCGTTCCGGCGCATCTCGATGATCAGCTCGCTGGAGGAGGCGCTGAAGGTAACGTTCCCGGCGGCGGACCAGCTGCACACGCCCGAGGCGGTCCAGTTTCTGGACGCGCTGTGCGTGAAGCACGAGGTCGAATGCAAGCCGCCGCGCACCGCCGCCCGCCTGCTCGACAAGCTGGTGGGCGAGTTCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCCCGCTCGCGAAGTACCATCGCAGCGCGACCGGCCTGACCGAGCGGTTCGAGCTGTTCGTGATGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCCAGCTGGTGGACGAAAACTTCTGCACCGCGCTCGAGTACGGCCT-GCCGCCGACCGGCGGCTGGGGCATGGGCATCGATCGGCTCACCATGTTCCTGACCGACTCGAACAACATCAAGGAGGTGCTGCTCTTCCCGGCCATGAAGCCGGACGACCCGAACCGCAAGCATCCGGCGGCGGTT-GGGGCCGGCGGCCCCGAA-CCGGGCAGCAGTGAGGCTTAGAGAAAGCGAGAGTGTG----AGAGAGAGAGACGGGCATTTCATCGCGACGGAGCGGCGACTGGCCGCTTCCATTGATTGTGTGTATAGCGTTTGCTAATCTTGCAGAAGTAAAACTGTCTATCTATTAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTG]
[+] EMBL BX466423 [AGCAGATCGGCACCAGGCACTNAGTGCGCAACATCTTCGTGACGCGCGCGCTCATCATCAGCTACGTGCGCCGGTTCTTCGACAACCTCGGCTTCCTCGAGGTGGAGACGCCGAT ATGAACATGATACCGGGCGGCGCGACGGCCAAGCCGTTCATCACGCACCACAACGACCTGAACATGGATCTGTTTCTGCGCATCGCGCCCGAGCTGTACCTGAAGATGCTGACGGTCGGCGGGCTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCAGCAATCCCGAGTTTACCACGTGCGAGTTCTACAGTGGCGTACGCGGACTACAACGACATCATCGACNAATCNACGCAGGCAGGAGTGCTCT ]
[+] EMBL BX613087 [ GCCGGTTCTTCGACAACCTCGGCTTCCTCGAGGTGGAGACGCCGATGATGAACATGATACCGGGCGGCGCGACGGCCAAGCCGTTCATCACGCACCACAACGACCTGAACATGGATCTGTTTCTGCGCATCGCGCCCGAGCTGTACCTGAAGATGCTGACGGTCGGCGGGCTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCA CAATCCCGAGTTTACCACGTGCGAGTTCTACA TGGCGTACGCGGACTACAACGACATCATCGAC ATC ACGCA GCAG CTGCTCTCGGGCATGGTGCACGCGATCCACGGCTCGTACAAGGTCAAGTACCATCCGGACGGGCCGGAGGGCGACGAGTACGAGATCGACTTTACGCCCCCGTTCCGGCGCATCTCGATGATCAGCTCGCTGGAGGAGGCGCTGAAGGTAACGTTCCCGGCGGCGGACCAGCTGCACACGCCCGAGGCGGTCCAGTTTCTGGACGCGCTGTGCGTGAAGCACGAGGTCGAATGCAAGCCGCCGCGCACCGCCGCCCGCCTGCTCGACAAGCTGGTGGGCGAGTTCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCCCGCTCGCGAAGTACCATCGCAGCGCGACCGGCCTGACCGAGCGGTTCGAGCTGTTCGTGATGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCCAGCTGGTGGACGAAAACTTCTGCACCGCGCTCGAGTACGGCCT GC ]
[+] EMBL BM617769 [ ccgCGGCGGGCTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCA CAATCCCGAGTTTACCACGTGCGAGTTCTACA TGGCGTACGCGGACTACAACGACATCATCGAC ATC ACGCA GCAG CTGCTCTCGGGCATGGTGCACGCGATCCACGGCTCGTACAAGGTCAAGTACCATCCGGACGGGCCGGAGGGCGACGAGTACGAGATCGACTTTACGCCCCCGTTCCGGCGCATCTCGATGATCAGCTCGCTGGAGGAGGCGCTGAAGGTAACGTTCCCGGCGGCGGACCAGCTGCACACGCCCGAGGCGGTCCAGTTTCTGGACGCGCTGTGCGTGAAGCACGAGGTCGAATGCAAGCCGCCGCGCACCGCCGCCCGCCTGCTCGACAAGCTGGTGGGCGAGTTCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCCCGCTCGCGAAGTACCATCGCAGCGCGACCGGCCTGACCGAGCGGTTCGAGCTGTTCGTGATGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCTAGCTGGTGGACG AAACTTCTGCACCGCGCTCGAGTACGGCCTGGCCGCCGACCGGCGGCTGGGGCATGGGCATCGATCGGCTCACCATGTTCCTGACCGACTCG ACCACATCAAGGAGGTGCT ]
[+] EMBL CNS09NO1 [ TCTACA TGGCGTACG GGACTACAACGACATCATCGAC ATC ACGCA GCAG CTGCTCTCGGGCATGGTGCACGCGATCCACGGCTCGTACAAGGTCAAGTACCATCCGGATGGGCCGGAGGGCGACGAGTACGAGATCGACTTTACGCCCCCGTTCCGGCGCATCTCGATGATCAGCTCGCTGGAGGAGGCGCTGAAGGTAACGTTCCCGGCGGCGGACCAGCTGCACACGCCCGAGGCGGTCCAGTTTCTGGACGCGCTGTGCGTGAAGCACGAGGTCGAATGCAAGCCGCCGCGCACCGCCGCCCGCCTGCTCGACAAGCTGGTGGGCGAGTTCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCCCGCTCGCGAAGTACCATCGCAGCGCGACCGGTCTGACCGAGCGGTTCGAGCTGTTCGTGATGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCCAGCTGGTGGACGAAAACTTCTGCACCGCGCTCGAGTACGGCCT GCCGCCGACCGGC GCTGGGGCATGGGCATCGATCGGCTCACCATGTTCCTGACCGACTCGAACAACATCAAGGAGGTGCTGCTCTTCCCGGCCATGAAGCCGGACGACCCGAACCGCAAGCATCCGGCGGCGGTTGGGGGCCGGCGG CCCGAAGCCGGGCAGCAGTGAGGCTTAGAGAAAGCGAGAGTGTG AGAGAGAGAGACGGGCATTTCATCGCGACGGAGCGGCGACTGGCCGCTTCCATTGATTGTGTGTATAGCGTTTGCTAATCTTGCAGAAGTAAAACTGTCTATCTATTAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTG]
[-] EMBL CNS09NO2 [ GCGTACGCGGACTACAACGACATCATCGAC ATC ACGCA GCAG CTGTTTTCGGGCATGGTGCACGCGATCCACGGCTCGTACAAGGTCAAGTACCATCCGGATGGGCCGGAGGGCGACGAGTACGAGATCGACTTTACGCCCCCGTTCCGGCGCATCTCGATGATCAGCTCGCTGGAGGAGGCGCTGAAGGTAACGTTCCCGGCGGCGGACCAGCTGCACACGCCCGAGGCGGTCCAGTTTCTGGACGCGCTGTGCGTGAAGCACGAGGTCGAATGCAAGCCGCCGCGCACCGCCGCCCGCCTGCTCGACAAGCTGGTGGGCGAGTTCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCCCGCTCGCGAAGTACCATCGCAGCGCGACCGGTCTGACCGAGCGGTTCGAGCTGTTCGTGATGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCCAGCTGGTGGACGAAAACTTCTGCACCGCGCTCGAGTACGGCCT G CGCCGACCGGCGGCTGGGGCATGGGCATCGATCGGCTCACCATGTTCCTGACCGACTCGAACAACATCAAGGAGGTGCTGCTCTTCCCGGCCATGAAGCCGGACGACCCGAACCGCAAGCATCCGGCGGCGGTT GGGCCGGCGGCCCCGAG CCGGGCAGCAGTGAGGCTTAGAGAAAGCGAGAGTGTG AGAGAGAGAGACGGGCATTTCATCGCGACGGAGCGGCGACTGGCCGCTTCCATTGATTGTGTGTATAGCGTTTGCTAATCTTGCAGAAGTAAAACTGTC ]
[+] EMBL BX617005 [ CGGACGGGCCGGAGGGCGACGAGTACGAGATCGACTTTACGCCCCCGTTCCGGCGCATCTCGATGATCAGCTCGCTGGAGGAGGCGCTGAAGGTAACGTTCCCGGCGGCGGACCAGCTGCACACGCCCGAGGCGGTCCAGTTTCTGGACGCGCTGTGCGTGAAGCACGAGGTCGAATGCAAGCCGCCGCGCACCGCCGCCCGCCTGCTCGACAAGCTGGTGGGCGAGTTCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCCCGCTCGCGAAGTACCATCGCAGCGCGACCGGCCTGACCGAGCGGTTCGAGCTGTTCGTGATGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGTCGGCGACGACGAGGCCCAGCTGGTGGACGAAAACTTCTGCACCGCGCTCGAGTACGGCCT GCCGCCGACCGGCGGCTGGGGCATGGGCATCGATCGGCTCACCATGTTCCTGACCGACTCGAACAACATCAAGGAGGTGCTGCTCTTCCCGGCCATGAAGCCGGACGACCCGAACCGCAAGCATCCGGCGGCGGTT GGGGCCGGCGGCCCCGAA CCGGGCAG ]
[-] EMBL AGA282604 [ TCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCCCGCTCGCGAAGTACCATCGCAGCGCGACCGGCCTGACCGAGCGGTTCGAGCTGTTCGTGATGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCCAGCTGGTGGACGAAAACTTCTGCACCGCGCTCGAGTACGGCCT GCCGCCGACCGGCGGCTGGGGCATGGGCATCGATCGGCTCACCATGTTCCTGACCGACTCGAACAACATCAAGGAGGTGCTGCTCTTCCCGGCCATGAAGCCGGACGACCCGAACCGCAAGCATCCGGCGGCGGTT GGGGCCGGCGGCCCCGAA CCGGGCAGCAGTGATGCTTAGAGAAAGCGAGAGTGTGTGTTAGAGAGAGAGACGGGCATTTCATCGCGACGG ]
[-] EMBL AGA285260 [ GCAGCGGGAGCGGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCCAGCTGGTGGACGAAAACTTCTGCACCGCGCTCGAGTACGGCCT GCCGCCGACCGGCGGCTGGGGCATGGGCATCGATCGGCTCACCATGTTCCTGACCGACTCGAACAACATCAAGGAGGTGCTGCTCTTCCCGGCCATGAAGCCGGACGACCCGAACCGCAAGCATCCGGCGGCGGTT GGGGCCGGCGGCCCCGAA CCGGGCAGCAGTGATGCTTAGAGAAAGCGAGAGTGTGTGTTAGAGAGAGAGACGGGCATTTCATCGCGACGGAGCGGCGACTGGCCGCTTCCATTGATTGTGTGTATAGCGTT ]
consensusID : consensus_8227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[ATCCCAGGTTTGCACATCTTCGTGAGCGCGCGCTCATCATCAGCTACGTGCGCGGTTCTTCGACAAACTCGGGTTCCTCCGAAGTGGAGACGCCGATGATGAACATGATACGGGCGGCGCGACGGCAAGCCGNTCATCACGCACCACAACGACTGAACATGGATCTGTTTCTGCGCATTGCGCCCGAACTGTACCTGAAGATGCTGACGGTCGGCGGGCTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCACAATCCCGAGTTTACCCACGTGCGAGTTCTACATGGCGTACGCGGACTACAACGACATCATCGACATCACGCAGCAGCTGCTCTCGGGCATGTGTGCACGCGATCCACGGGTCGTACAA]
[+] EMBL AL933680 [ATCCCAGGTTTGCACATCTTCGTGAGCGCGCGCTCATCATCAGCTACGTGCGCGGTTCTTCGACAAACTCGGGTTCCTCCGAAGTGGAGACGCCGATGATGAACATGATACGGGCGGCGCGACGGCAAGCCGNTCATCACGCACCACAACGACTGAACATGGATCTGTTTCTGCGCATTGCGCCCGAACTGTACCTGAAGATGCTGACGGTCGGCGGGCTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCACAATCCCGAGTTTACCCACGTGCGAGTTCTACATGGCGTACGCGGACTACAACGACATCATCGACATCACGCAGCAGCTGCTCTCGGGCATGTGTGCACGCGATCCACGGGTCGTACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8227#0 AGCAGATCGGCACCAGGCACTNAGTGCGCAACATCTTCGTGACGCGCGCGCTCATCATCA 60
consensus_8227#1 ----------------ATCCCAGGTTTGCA-CATCTTCGTGA-GCGCGCGCTCATCATCA 42
* ** *** *********** *****************
consensus_8227#0 GCTACGTGCGCCGGTTCTTCGACAACCTCGGCTTCCTC-GAGGTGGAGACGCCGAT-ATG 118
consensus_8227#1 GCTACGTGCGC-GGTTCTTCGACAAACTCGGGTTCCTCCGAAGTGGAGACGCCGATGATG 101
*********** ************* ***** ****** ** ************** ***
consensus_8227#0 AACATGATACCGGGCGGCGCGACGGCCAAGCCGTTCATCACGCACCACAACGACCTGAAC 178
consensus_8227#1 AACATGATAC-GGGCGGCGCGACGGC-AAGCCGNTCATCACGCACCACAACGAC-TGAAC 158
********** *************** ****** ******************** *****
consensus_8227#0 ATGGATCTGTTTCTGCGCATCGCGCCCGAGCTGTACCTGAAGATGCTGACGGTCGGCGGG 238
consensus_8227#1 ATGGATCTGTTTCTGCGCATTGCGCCCGAACTGTACCTGAAGATGCTGACGGTCGGCGGG 218
******************** ******** ******************************
consensus_8227#0 CTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCAC 298
consensus_8227#1 CTCGACCGGGTGTACGAGATCGGGCGCCAGTTCCGCAACGAGGGCATCGACCTGACGCAC 278
************************************************************
consensus_8227#0 AATCCCGAGTTTACC-ACGTGCGAGTTCTACATGGCGTACGCGGACTACAACGACATCAT 357
consensus_8227#1 AATCCCGAGTTTACCCACGTGCGAGTTCTACATGGCGTACGCGGACTACAACGACATCAT 338
*************** ********************************************
consensus_8227#0 CGACATCACGCAGCAGCTGCTCTCGGGCATG-GTGCACGCGATCCACGGCTCGTACAAGG 416
consensus_8227#1 CGACATCACGCAGCAGCTGCTCTCGGGCATGTGTGCACGCGATCCACGGGTCGTACAA-- 396
******************************* ***************** ********
consensus_8227#0 TCAAGTACCATCCGGACGGGCCGGAGGGCGACGAGTACGAGATCGACTTTACGCCCCCGT 476
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TCCGGCGCATCTCGATGATCAGCTCGCTGGAGGAGGCGCTGAAGGTAACGTTCCCGGCGG 536
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 CGGACCAGCTGCACACGCCCGAGGCGGTCCAGTTTCTGGACGCGCTGTGCGTGAAGCACG 596
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 AGGTCGAATGCAAGCCGCCGCGCACCGCCGCCCGCCTGCTCGACAAGCTGGTGGGCGAGT 656
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TCCTGGAGGAGACGTGCATCAACCCGACGTTCATCTGCGACCATCCGCAGATCATGAGCC 716
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 CGCTCGCGAAGTACCATCGCAGCGCGACCGGCCTGACCGAGCGGTTCGAGCTGTTCGTGA 776
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TGCGCAAGGAGGTGTGCAACGCGTACACCGAGCTGAACGATCCGGCGGTGCAGCGGGAGC 836
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 GGTTCGAGCAGCAGGCCGCGGACAAGGCGGCCGGCGACGACGAGGCCCAGCTGGTGGACG 896
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 AAAACTTCTGCACCGCGCTCGAGTACGGCCTGCCGCCGACCGGCGGCTGGGGCATGGGCA 956
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TCGATCGGCTCACCATGTTCCTGACCGACTCGAACAACATCAAGGAGGTGCTGCTCTTCC 1016
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 CGGCCATGAAGCCGGACGACCCGAACCGCAAGCATCCGGCGGCGGTTGGGGCCGGCGGCC 1076
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 CCGAACCGGGCAGCAGTGAGGCTTAGAGAAAGCGAGAGTGTGAGAGAGAGAGACGGGCAT 1136
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TTCATCGCGACGGAGCGGCGACTGGCCGCTTCCATTGATTGTGTGTATAGCGTTTGCTAA 1196
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TCTTGCAGAAGTAAAACTGTCTATCTATTAAAAAAAAAAAAAAAAAAAAAAAAGGCCACA 1256
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TGTGCTCGAGCTG 1269
consensus_8227#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||