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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1532 fasta sequence
[CGAAGCGCAGAAGAACGTCAACCGGCACGGCCAGCAGCAGTCAAAGCTGCGCGGCTTCCTCAAACCCACCGGCTACAAACCGATGATCATTCTGTTTTGGTTTTTCCTGATCCAGCAGTTCAGCGGCATCTACATCACGCTCTTCTTCGCGGTAACCTTCATCCAAGACGTCGGCACCGAGGTGAACGCGTTCACGGCCTCCATCTTTGTCGGGTTGACGCGCTTCTCGATGTCGCTGCTGAACGCTTGGCTGCTGAAACGATTCCCCCGCCGCCAGCTGGTCATGGTGTCAACCACCGGCATGGCCATTTGCATGTTCGTCTCGGGGTTGTTTACGCTCTGGATAAAGGAGGGCACCACCACACTCACGTGGATCCCGGTCGTCGGTTTGCTGCTGTACGTGTGCGCCTCCATGATTGGGCTGCTCACCATACCGTGGACGATGACGGCAGAACTGTTCCCGACGGATATTCGCGGCATCGCGCACTCGATATCATACTCGATGGCTAATCTGTTGATGTTCTTTGCCGTTCAAAGCTACCGAACCATAACCGATCTGCTCGGTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTTTGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAACCAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGCTGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATGGTGCTTAGAAGGGGGTATAAAACTGAGTTGCAGGAGACGAATAAGACCACACACTGACTGTACTGCGGTAGTATTGAAAATGCTACCTACGCAGTTGTACTTAACGTAGCAAATGGGATAAGAACAGGCACAATGAATCAATTCAGTAACTGGC-GGCACCTTCTAGAATATATATCGTAGGTCGAGGAGAAACTGGTGATTAAATCAGTACAACAGGAATATACACATACACACACACACTCATGCATAAAACATATTTATTTTTAGTATTTTCAAATTCCGTAAATCTTCTCGCGAAACGAAACGGCGGCAAAAGCTATAAACAACGACTTAACCCGCAATGCACGTTTGATTCCGGAAGGTATGCCGAAACGGTGACATGTTGTGTATTGATTGATTAA-TTTCGATGGAACGTTGCGGGCAAAGTTGCGAAATTGATTCGGCAGACTGAGTTTGATGAAGCCATACGCATGACGACAAAGACCAGCACCACACACCCCACGGTGAAGCCATTTAATGCAATCCAAGTTCAAAACACAGTGTATTAATCGTATTCGAAGTATTGCAAGTGCGTAGATTTAGTTCGAAATAAATTGTTGAAATGAACGTGCGATCAACGTGTGATTGAGCCGTGTTTTTCTGTCTTTCTAAAGAAAGGTACGTTTCGATTCCGACACGTTCTGTTCGATTACGGCAAACGATGACAGTATGCGAATA]
[+] EMBL BX608964 [CGAAGCGCAGAAGAACGTCAACCGGCACGGCCAGCAGCAGTCAAAGCTGCGCGGCTTCCTCAAACCCACCGGCTACAAACCGATGATCATTCTGTTTTGGTTTTTCCTGATCCAGCAGTTCAGCGGCATCTACATCACGCTCTTCTTCGCGGTAACCTTCATCCAAGACGTCGGCACCGAGGTGAACGCGTTCACGGCCTCCATCTTTGTCGGGTTGACGCGCTTCTCGATGTCGCTGCTGAACGCTTGGCTGCTGAAACGATTCCCCCGCCGCCAGCTGGTCATGGTGTCAACCACCGGCATGGCCATTTGCATGTTCGTCTCGGGGTTGTTTACGCTCTGGATAAAGGAGGGCACCACCACACTCACGTGGATCCCGGTCGTCGGTTTGCTGCTGTACGTGTGCGCCTCCATGATTGGGCTGCTCACCATACCGTGGACGATGACGGCAGAACTGTTCCCGACGGATATTCGCGGCATCGCGCACTCGATATCATACTCGATGGCTAATCTGTTGATGTTCTTTGCCGTTCAAAGCTACCGAACCATAACCGATCTGCTCGGTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGTCCTATTCTTCCTGCCCGAGACGCATGGTAAAATTTTGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTAC ]
[+] EMBL BX627143 [ CATCACGCTCTTCTTCGCGGTAACCTTCATCCAAGACGTCGGCACCGAGGTGAACGCGTTCACGGCCTCCATCTTTGTCGGGTTGACGCGCTTCTCGATGTCGCTGCTGAACGCTTGGCTGCTGAAACGATTCCCCCGCCGCCAGCTGGTCATGGTGTCAACCACCGGCATGGCCATTTGCATGTTCGTCTCGGGGTTGTTTACGCTCTGGATAAAGGAGGGCACCACCACACTCACGTGGATCCCGGTCGTCGGTTTGCTGCTGTACGTGTGCGCCTCCATGATTGGGCTGCTCACCATACCGTGGACGATGACGGCAGAACTGTTCCCGACGGATATTCGCGGCATCGCGCACTCGATATCATACTCGATGGCTAATCTGTTGATGTTCTTTGCCGTTCAAAGCTACCGAACCATAACCGATCTGCTCGGTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTTTGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAACCAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGCTGANGGAGGTGGAGCTG ]
[+] EMBL AL932693 [ tccccgaGGAT AAGGAGGGCA CA CACACTCACGTGGAT CCGGTCGTCGGTTTGCTGCTGTACGTGTGCGCCTCCATGATTGGGCTGCTCACCATACCGTGGACGATGACGGCAGAACTGTTCCCGACGGATATTCGCGGCATCGCGCACTCGATATCATACTCGATGGCTAATCTGTTGATGTTCTTTGCCGTTCAAAGCTACCGAACCATAACCGATCTGCTCGGTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTTTGGCCGAAATAGAGGCG TCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAACCAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGCTGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATG ]
[+] EMBL BM612298 [ CCGGTCGTCGGTTTGCTGCTGTACGTGTGCGCCTCCATGATTGGGCTGCTCACCATACCGTGGACGATGACGGCAGAACTGTTCCCGACGGATATTCGCGGCATCGCGCACTCGATATCATACTCGATGGCTAATCTGTTGATGTTCTTTGCCGTTCAAAGCTACCGAACCATAACCGATCTGCTCGGTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTTTGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAACCAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGCTGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATGGTGCTTAGAAGGGGGTATAAAACTGAGTTGCAGGAGACGAATAAGACCACACACTGACTGTACTGCGGTAGTATTGAAAATGCTACCTACGCAGTTGTACTTAACGTAGCAAATGGGATAAGAACAGGCACAATGAATCAATTCAGTAACTGGCGGGCACCTTCTAGAATATATATCGTAGGTCGAGGAGA ]
[+] EMBL BM623351 [ ccgCCGAACCATAACCGATCTGCTCGGTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTTTGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAACCAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGCTGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATGGTGCTTAGAAGGGGGTATAAAACTGAGTTGCAGGAGACGAATAAGACCACACACTGACTGTACTGCGGTAGTATTGAAAATGCTACCTACGCAGTTGTACTTAACGTAGCAAATGGGATAAGAACAGGCACAATGAATCAATTCAGTAACTGGC GGCACCTTCTAGAATATATATCGTAGGTCGAGGAGAAACTGGTGATTAAATCAGTACAACAGGAATATACACATACACACACACACTCATGCATAAAACATATTTATTTTTAGTATTTTCAAATTCCGTAAATCTTCTCGCGAAACGAAACGGCGGCAAAAGCTATAAACAACGACTTAACCCGCAATGCACGTTTGATTCCGGAAGGTATGCCGAAACGGGGACATGTTGTGTATTGATTGATTAATTTTCGATGGAACGT ]
[+] EMBL BM598698 [ ccgTACCTACGCAGTTGTACTTAACGTAGCAAATGGGATAAGAACAGGCACAATGAATCAATTCAGTAACTGGC GGCACCTTCTAGAATATATATCGTAGGTCGAGGAGAAACTGGTGATTAAATCAGTACAACAGGAATATACACATACACACACACACTCATGCATAAAACATATTTATTTTTAGTATTTTCAAATTCCGTAAATCTTCTCGCGAAACGAAACGGCGGCAAAAGCTATAAACAACGACTTAACCCGCAATGCACGTTTGATTCCGGAAGGTATGCCGAAACGGTGACATGTTGTGTATTGATTGATTAA TTTCGATGGAACGTTGCGGGCAAAGTTGCGAAATTGATTCGGCAGACTGAGTTTGATGAAGCCATACGCATGACGACAAAGACCAGCACCACACACCCCACGGTGAAGCCATTTAATGCAATCCAAGTTCAAAACACAGTGTATTAATCGTATTCGAAGTATTGCAAGTGCGTAGATT ]
[+] EMBL AGA281598 [ tttttTTTTCAAATTCCGTAAATCTTCTCGCGAAACGAAACGGCGGCAAAAGCTATAAACAACGACTTAACCCGCAATGCACGTTTGATTCCGGAAGGTATGCCGAAACGGTGACATGTTGTGTATTGATTGATTAA TTTCGATGGAACGTTGCGGGCAAAGTTGCGAAATTGATTCGGCAGACTGAGTTTGATGAAGCCATACGCCTGACGACAAAGACCAGCACCACACACCCCACGGTGAAGCCATTTAATGCAATCCAAGTTCAAAACACAGTGTATTAATCATATTCGAAGTATTGCAAGTGCGTAGATTTAGTTCGAAATAAATTGTTGAAATGAACGTGCGATCAACGTGTGATTGAGCCGTGTTTTTCTGTCTTTCTAAAGAAAGGTACGTTTCGATTCCGACACGTTCTGTTCGATTACGGCAAACGATGACAGTATGCGAATA]
[-] EMBL AGA283190 [ TTCCGACACGTTCTGTTCGATTACGGCAAACGATGACAGTATGCGAAT ]
consensusID : consensus_8233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[AGCAGATCGCCACGAGGTNCAGAACCATAACCGATCTGCTCGGCTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTTTGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAACCAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGCTGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATGGTGCTTAGAAGGGGGGTATAAAACTGAGTTGCAGGAGACGAATAAGACCACACACTGACTGTACTGCGGTAGTATTGAAAATGCTACCGTAAGCAGTTGTACTTAACGTAGCAAAGAGGATAAGAACAGGCACAATGAATCAAGTTCAGTAACTGGCGGCCACCTTCTAGGAATAGTATAGTCGTAGCGTCGAGGGAGAAACTGGGTGNATTCGAACTCAGTCACNAACCAGGCACATATACACANATACACACAACAACTCATGTCAGTAAAACCAGTATACAATATCACAAAGTAATCTTCATCACAATTCCGATACAATCTTACTCAACAGAAAACGAAAACCAGCNAGGACAAAGCGTATCAACA]
[+] EMBL BX466628 [AGCAGATCGCCACGAGGTNCAGAACCATAACCGATCTGCTCGGCTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAGTGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTTTGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAACCAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGCTGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATGGTGCTTAGAAGGGGGGTATAAAACTGAGTTGCAGGAGACGAATAAGACCACACACTGACTGTACTGCGGTAGTATTGAAAATGCTACCGTAAGCAGTTGTACTTAACGTAGCAAAGAGGATAAGAACAGGCACAATGAATCAAGTTCAGTAACTGGCGGCCACCTTCTAGGAATAGTATAGTCGTAGCGTCGAGGGAGAAACTGGGTGNATTCGAACTCAGTCACNAACCAGGCACATATACACANATACACACAACAACTCATGTCAGTAAAACCAGTATACAATATCACAAAGTAATCTTCATCACAATTCCGATACAATCTTACTCAACAGAAAACGAAAACCAGCNAGGACAAAGCGTATCAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8233#0 CGAAGCGCAGAAGAACGTCAACCGGCACGGCCAGCAGCAGTCAAAGCTGCGCGGCTTCCT 60
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 CAAACCCACCGGCTACAAACCGATGATCATTCTGTTTTGGTTTTTCCTGATCCAGCAGTT 120
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 CAGCGGCATCTACATCACGCTCTTCTTCGCGGTAACCTTCATCCAAGACGTCGGCACCGA 180
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 GGTGAACGCGTTCACGGCCTCCATCTTTGTCGGGTTGACGCGCTTCTCGATGTCGCTGCT 240
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 GAACGCTTGGCTGCTGAAACGATTCCCCCGCCGCCAGCTGGTCATGGTGTCAACCACCGG 300
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 CATGGCCATTTGCATGTTCGTCTCGGGGTTGTTTACGCTCTGGATAAAGGAGGGCACCAC 360
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 CACACTCACGTGGATCCCGGTCGTCGGTTTGCTGCTGTACGTGTGCGCCTCCATGATTGG 420
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 GCTGCTCACCATACCGTGGACGATGACGGCAGAACTGTTCCCGACGGATATTCGCGGCAT 480
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 CGCGCACTCGATATCATACTCGATGGCTAATCTGTTGATGTTCTTTGCCGTTCAAAGCTA 540
consensus_8233#1 -----------------------------------------AGCAGATCGCCACGAGGTN 19
** ** *
consensus_8233#0 CCGAACCATAACCGATCTGCTCGG-TGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAG 599
consensus_8233#1 CAGAACCATAACCGATCTGCTCGGCTGGAGCGTACGCGGTGCAGTGGATGTTTGCCGTAG 79
* ********************** ***********************************
consensus_8233#0 TGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTT 659
consensus_8233#1 TGTCTGTGATCGGATTTTTCTTCGCCCTATTCTTCCTGCCCGAGACGCATGGTAAAAGTT 139
************************************************************
consensus_8233#0 TGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAAC 719
consensus_8233#1 TGGCCGAAATAGAGGCGTTCTTTGCGGGCAAATCGCAACCCCAGCGCGTACCGACGGAAC 199
************************************************************
consensus_8233#0 CAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGC 779
consensus_8233#1 CAGCAGCCAAACCGTCCGTGACGGAGCATCTGATACGCAGTCCCAGCCGGGAGGCAAAGC 259
************************************************************
consensus_8233#0 TGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATGGTGCTTAGAAGGGGG-TATAAAAC 838
consensus_8233#1 TGAGGGAGGTGGAGCTGATGCTGAAGAACAAAAATGGTGCTTAGAAGGGGGGTATAAAAC 319
*************************************************** ********
consensus_8233#0 TGAGTTGCAGGAGACGAATAAGACCACACACTGACTGTACTGCGGTAGTATTGAAAATGC 898
consensus_8233#1 TGAGTTGCAGGAGACGAATAAGACCACACACTGACTGTACTGCGGTAGTATTGAAAATGC 379
************************************************************
consensus_8233#0 TACC-TACGCAGTTGTACTTAACGTAGCAAATGGGATAAGAACAGGCACAATGAATCAA- 956
consensus_8233#1 TACCGTAAGCAGTTGTACTTAACGTAGCAAAGAGGATAAGAACAGGCACAATGAATCAAG 439
**** ** *********************** **************************
consensus_8233#0 TTCAGTAACTGGCGGC-ACCTTCTAG-AATA-TATA-TCGTAG-GTCGAGG-AGAAACTG 1010
consensus_8233#1 TTCAGTAACTGGCGGCCACCTTCTAGGAATAGTATAGTCGTAGCGTCGAGGGAGAAACTG 499
**************** ********* **** **** ****** ******* ********
consensus_8233#0 GTGATTAAATCAGTACAACAGGAATATACACATACACACACACACTCATGCATAAAACAT 1070
consensus_8233#1 G---GTGNATTCGAACT-CAGTCACNAAC-CAGGCACATATACACANATACACACAACA- 553
* * ** * ** *** * ** ** **** * **** ** ** * ****
consensus_8233#0 ATTTATTTTTAGTATTTTCAAATTCCGTAAATCTTCTCGCGAAACGAAACGGCGGCAAAA 1130
consensus_8233#1 ACTCATGTC-AGT------AAAACCAGTATACAATATCACAAAGT-AATCTTCATCACAA 605
* * ** * *** *** * *** * * ** * ** ** * * ** **
consensus_8233#0 GCTATAAACAACG--ACTTAACCCGCAATGCACGTTTGATTCCGGAAGGTATGCCGAAAC 1188
consensus_8233#1 TTCCGATACAATCTTACTCAACAGAAAACGAAAACCAGCNAGGACAAAGCGTATCAACA- 664
* **** *** *** ** * * * ** * * * * *
consensus_8233#0 GGTGACATGTTGTGTATTGATTGATTAATTTCGATGGAACGTTGCGGGCAAAGTTGCGAA 1248
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 ATTGATTCGGCAGACTGAGTTTGATGAAGCCATACGCATGACGACAAAGACCAGCACCAC 1308
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 ACACCCCACGGTGAAGCCATTTAATGCAATCCAAGTTCAAAACACAGTGTATTAATCGTA 1368
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 TTCGAAGTATTGCAAGTGCGTAGATTTAGTTCGAAATAAATTGTTGAAATGAACGTGCGA 1428
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 TCAACGTGTGATTGAGCCGTGTTTTTCTGTCTTTCTAAAGAAAGGTACGTTTCGATTCCG 1488
consensus_8233#1 ------------------------------------------------------------
consensus_8233#0 ACACGTTCTGTTCGATTACGGCAAACGATGACAGTATGCGAATA 1532
consensus_8233#1 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||