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Anopheles gambiae
cluster # 8238 cluster # 8238       Sequences # 9       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8238#0 length = 1208 sequences # 2  
consensus_8238#1 length = 787 sequences # 2  
consensus_8238#2 length = 629 sequences # 1  
consensus_8238#3 length = 601 sequences # 1  
consensus_8238#4 length = 571 sequences # 2  
consensus_8238#5 length = 183 sequences # 1  

consensusID : consensus_8238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1208
fasta sequence
                              [CCGCCCACGCGTCCGAAAGAAACTGTTTCTGGTGGGGTGGGGAGTGAATTGGGAAGGAGGAAGGAGTTCGTTCGCGCGGGTGACGATTTTTTGACGCACATAGTAAGAAGTTTGAATTAGGAGCGAAGGATTTGGACGGGAAAGGTTTGAAGCGAGGGAAAGGAGAGAGAGAGAGAGAAGGAGGGAGAGAGGAAAGGGATAACGAGAGAAGGGTTAGGAAAAGCGAGGATAAGGAGCAGGTTGTAATCGCTATGTACATTAGCACATGTGTATATAAGTAGTAAGGGTGCGCGCGTGTGCAACAAAAGCGCGCGCGATCAACACCCACACACACACACACACAAATAACACACCGAGCGAATTACACAGGACACGCACGGCCACTGGCAGACAGAGGCGGAGTATGCTAGAAAGGTAAAAGGCAGGTAGGAAGTAGCTGCCAAATGTATGATGTAGGGCGAGAAGAGAAGAAAACGCAGCTGCAGGAACAACAGCAAACAAAAGGGGCAGTGGGAAAGGGTGGGAATGTACTTTCGAGCTGTTACTAAATATACCGTAGATCATATACCGCGCGCGCACACAGCGTACGCATTGTGTTACAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCAGAAACTGGGGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAACAAAAAAAAACAAGGATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAAGGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGAAAAGGTTGAAGGAATGTTAGTGTTGGCAGANGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAATGAGAAGAGGATAGATAAAGAGAGTCTCCCGCNAGNTCTAAGCA]

[+] EMBL BM619293             [CCGCCCACGCGTCCGAAAGAAACTGTTTCTGGTGGGGTGGGGAGTGAATTGGGAAGGAGGAAGGAGTTCGTTCGCGCGGGTGACGATTTTTTGACGCACATAGTAAGAAGTTTGAATTAGGAGCGAAGGATTTGGACGGGAAAGGTTTGAAGCGAGGGAAAGGAGAGAGAGAGAGAGAAGGAGGGAGAGAGGAAAGGGATAACGAGAGAAGGGTTAGGAAAAGCGAGGATAAGGAGCAGGTTGTAATCGCTATGTACATTAGCACATGTGTATATAAGTAGTAAGGGTGCGCGCGTGTGCAACAAAAGCGCGCGCGATCAACACCCACACACACACACACACAAATAACACACCGAGCGAATTACACAGGACACGCACGGCCACTGGCAGACAGAGGCGGAGTATGCTAGAAAGGTAAAAGGCAGGTAGGAAGTAGCTGCCAAATGTATGATGTAGGGCGAGAAGAGAAGAAAACGCAGCTGCAGGAACAACAGCAAACAAAAGGGGCAGTGGGAAAGGGTGGGAATGTACTTTCGAGCTGTTACTAAATATACCGTAGATCATATACCGCGCGCGCACACAGCGTACGCATTGTGTTACAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX626806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AACGAAAGGGGCAGTGGGAAAGGGTGGGAATGTACTTTCGAGCTGTTACTAAATATACCGTAGATCATATACCGCGCGCGCACACAGCGTACGCATTGTGTTACAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCAGAAACTGGGGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAACAAAAAAAAACAAGGATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAAGGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGAAAAGGTTGAAGGAATGTTAGTGTTGGCAGANGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAATGAGAAGAGGATAGATAAAGAGAGTCTCCCGCNAGNTCTAAGCA]


>consensus_8238#0 CCGCCCACGCGTCCGAAAGAAACTGTTTCTGGTGGGGTGGGGAGTGAATTGGGAAGGAGG AAGGAGTTCGTTCGCGCGGGTGACGATTTTTTGACGCACATAGTAAGAAGTTTGAATTAG GAGCGAAGGATTTGGACGGGAAAGGTTTGAAGCGAGGGAAAGGAGAGAGAGAGAGAGAAG GAGGGAGAGAGGAAAGGGATAACGAGAGAAGGGTTAGGAAAAGCGAGGATAAGGAGCAGG TTGTAATCGCTATGTACATTAGCACATGTGTATATAAGTAGTAAGGGTGCGCGCGTGTGC AACAAAAGCGCGCGCGATCAACACCCACACACACACACACACAAATAACACACCGAGCGA ATTACACAGGACACGCACGGCCACTGGCAGACAGAGGCGGAGTATGCTAGAAAGGTAAAA GGCAGGTAGGAAGTAGCTGCCAAATGTATGATGTAGGGCGAGAAGAGAAGAAAACGCAGC TGCAGGAACAACAGCAAACAAAAGGGGCAGTGGGAAAGGGTGGGAATGTACTTTCGAGCT GTTACTAAATATACCGTAGATCATATACCGCGCGCGCACACAGCGTACGCATTGTGTTAC AAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCAGA AACTGGGGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAACAAAAAAAAACAAG GATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAG CAAACATGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAG TGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAA AAGGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAAT TGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGA GTGGGCGCGAAGAAGAAGAAAAGGTTGAAGGAATGTTAGTGTTGGCAGANGAATGGTGGC TGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCAC ACACCGGACACACCGGACACTGAATGAGAAGAGGATAGATAAAGAGAGTCTCCCGCNAGN TCTAAGCA



consensusID : consensus_8238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 787
fasta sequence
                              [ATCCCCCAGTTATTGTTTGGTTTTGACCAATTTCTACATTTTTACGCGCACGCGATGATTTGTTTATTTGTTTGTTTGGGTTTAATATGTTTAGCTTCTATTGTTTCTTTTCGTTTTTTCCCCCATTTTTTTTTTAAATTATGTTCCTATTTTCGTATTGGCCACGAAGGAAGTGGTACTTGTACGCGATACTCCCAGCAAGTTTACTGCGTTGTTGTTGAAACAATCGGGGGACAATGTTACACACCTACACAAGATAAAACACAAAAGAAAGTCATGTAATGGATTGCAAATCTCTAACAAAGCAAATGAAGCTACACAAACAAGCAAAACGCTCTCGGCGCGCTCGAACAAAGAATCGGTACGAACTATACGGATAGCAAGGAATAAGGGAAACAGGGTGTGCGAGGCCGCTGGACTGAATGAAGGGTAAACCAGAGAACCAGAGCGATGGGACATTCTGGCGTGTCAGCGATCGGCGACAGTCTGCCCAGCGCCGCATCGTGCAAAACCACGGTTCCTCATAAGCAAACGCGTGCGGCAGATAATATAATTATGGGCGAAGCAGCCTAATACAGCAGGATCAGACAAAAAAAAAGCAGGTCGGCATCGAGAAACAGCGTAAAAATACTACACCCAAGCAACACGTTTATTTTCGTAAAACGGCTAACTCGGTGCATATCGAAATCACCCCGTTAAACGCGTGTGTCTTGGCTTCATGATACCATTTTGTTTAAGTTTGTTTAGAAGAAGATGATGGTAATAAAATAATAATATTTAAAAAACA]

[+] EMBL AL932886             [ATCCCCCAGTTATTGTTTGGTTTTGACCAATTTCTACATTTTTACGCGCACGCGATGATTTGTTTATTTGTTTGTTTGGGTTTAATATGTTTAGCTTCTATTGTTTCTTTTCGTTTTTTCCCCCATTTTTTTTTTAAATTATGTTCCTATTTTCGTATTGGCCACGAAGGAAGTGGTACTTGTACGCGATACTCCCAGCAAGTTTACTGCGTTGTTGTTGAAACAATCGGGGGACAATGTTACACACCTACACAAGATAAAACACAAAAGAAAGTCATGTAATGGATTGCAAATCTCTAACAAAGCAAATGAAGCTACACAAACAAGCAAAACGCTCTCGGCGCGCTCGAACAAAGAATCGGTACGAACTATACGGATAGCAAGGAATAAGGGAAACAGGGTGTGCGAGGCCGCTGGACTGAATGAAGGGTAAACCAGAGAACCAGAGCGATGGGACATTCTGGCGTGTCAGCGATCGGCGACAGTCTGCCCAGCGCCGCATCGTGCAAAACCACGGTTCCTCATAAGCAAACGCGTGCGGCAGATAATATAATTATGGGCGAAGCAGCCTAATACAGCAGGATCAGACAAAAAA                                                                                                                                                                                                ]
[-] EMBL AGA281168            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCACGGTTCCTCATAAGCAAACGCGTGCGGCAGATAATATAATTATGGGCGAAGCAGCCTAATACAGCAGGATCAGACAAAAAAAAAGCAGGTCGGCATCGAGAAACAGCGTAAAAATACTACACCCAAGCAACACGTTTATTTTCGTAAAACGGCTAACTCGGTGCATATCGAAATCACCCCGTTAAACGCGTGTGTCTTGGCTTCATGATACCATTTTGTTTAAGTTTGTTTAGAAGAAGATGATGGTAATAAAATAATAATATTTAAAAAACA]


>consensus_8238#1 ATCCCCCAGTTATTGTTTGGTTTTGACCAATTTCTACATTTTTACGCGCACGCGATGATT TGTTTATTTGTTTGTTTGGGTTTAATATGTTTAGCTTCTATTGTTTCTTTTCGTTTTTTC CCCCATTTTTTTTTTAAATTATGTTCCTATTTTCGTATTGGCCACGAAGGAAGTGGTACT TGTACGCGATACTCCCAGCAAGTTTACTGCGTTGTTGTTGAAACAATCGGGGGACAATGT TACACACCTACACAAGATAAAACACAAAAGAAAGTCATGTAATGGATTGCAAATCTCTAA CAAAGCAAATGAAGCTACACAAACAAGCAAAACGCTCTCGGCGCGCTCGAACAAAGAATC GGTACGAACTATACGGATAGCAAGGAATAAGGGAAACAGGGTGTGCGAGGCCGCTGGACT GAATGAAGGGTAAACCAGAGAACCAGAGCGATGGGACATTCTGGCGTGTCAGCGATCGGC GACAGTCTGCCCAGCGCCGCATCGTGCAAAACCACGGTTCCTCATAAGCAAACGCGTGCG GCAGATAATATAATTATGGGCGAAGCAGCCTAATACAGCAGGATCAGACAAAAAAAAAGC AGGTCGGCATCGAGAAACAGCGTAAAAATACTACACCCAAGCAACACGTTTATTTTCGTA AAACGGCTAACTCGGTGCATATCGAAATCACCCCGTTAAACGCGTGTGTCTTGGCTTCAT GATACCATTTTGTTTAAGTTTGTTTAGAAGAAGATGATGGTAATAAAATAATAATATTTA AAAAACA



consensusID : consensus_8238#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [GATCCCCCGAGGTNATTTCTCAAAACGAAAAACAACAAAAAAAAACAAGGATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAAGGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCNNAAGAAGAAGAACAAGGTTGAAGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAACTGAGCAAGAGGATAGATAAAGAGAGTCTCCCGCAAGTTCTAAGCATTTNTTGGTNGTAGTTTGACAATTTCTACAATTACGCGCACGCGAATGATTTGTCATTGTNTGGTTTTATTTAATATGTTTAGCTTCT]

[+] EMBL AL932295             [GATCCCCCGAGGTNATTTCTCAAAACGAAAAACAACAAAAAAAAACAAGGATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAAGGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCNNAAGAAGAAGAACAAGGTTGAAGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAACTGAGCAAGAGGATAGATAAAGAGAGTCTCCCGCAAGTTCTAAGCATTTNTTGGTNGTAGTTTGACAATTTCTACAATTACGCGCACGCGAATGATTTGTCATTGTNTGGTTTTATTTAATATGTTTAGCTTCT]


>consensus_8238#2 GATCCCCCGAGGTNATTTCTCAAAACGAAAAACAACAAAAAAAAACAAGGATTAAAACCG GAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGC GCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTG CCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAAGGCTAGTAA TAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTGGCGTTTGCG GGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCNNA AGAAGAAGAACAAGGTTGAAGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAG TTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCACACACCGGAC ACACCGGACACTGAACTGAGCAAGAGGATAGATAAAGAGAGTCTCCCGCAAGTTCTAAGC ATTTNTTGGTNGTAGTTTGACAATTTCTACAATTACGCGCACGCGAATGATTTGTCATTG TNTGGTTTTATTTAATATGTTTAGCTTCT



consensusID : consensus_8238#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [CCGCGGACGCGTGGGAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGGAAAGGATGAAGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAATGAGAAGAGGATAGATAAAGAGAGTCTCCCGCAAGTTCTAAGCATTTTTTTGTTTGTTTGTTTTGACAATTTCTACAATTACGCGCACGCGAATGATTTTGTTTATTTTTGTTTTGTTTTGTTTAATATGTTTAGCTTCTATTGTTTCTTTTCGTTTTTTCCCCCATTTTTTTTTTAATTATGTTCCTATTTTCGTATTGGCCACGAAGGAGGGAAGTGGTACTTGTACGCGATACTCCCAGCAAGTTTGCTGCGTTGTTGTTGAAACAATCGGGGACAATGTTACACACCTACACAAGATAAAACACAAAAGAAAGTCATGTAATGGATTGCAAATCTCTAACAAAGCAAATGAAGCTACACAAACAAGCAAAA]

[+] EMBL BM579599             [CCGCGGACGCGTGGGAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGGAAAGGATGAAGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAATGAGAAGAGGATAGATAAAGAGAGTCTCCCGCAAGTTCTAAGCATTTTTTTGTTTGTTTGTTTTGACAATTTCTACAATTACGCGCACGCGAATGATTTTGTTTATTTTTGTTTTGTTTTGTTTAATATGTTTAGCTTCTATTGTTTCTTTTCGTTTTTTCCCCCATTTTTTTTTTAATTATGTTCCTATTTTCGTATTGGCCACGAAGGAGGGAAGTGGTACTTGTACGCGATACTCCCAGCAAGTTTGCTGCGTTGTTGTTGAAACAATCGGGGACAATGTTACACACCTACACAAGATAAAACACAAAAGAAAGTCATGTAATGGATTGCAAATCTCTAACAAAGCAAATGAAGCTACACAAACAAGCAAAA]


>consensus_8238#3 CCGCGGACGCGTGGGAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCA CGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGGAAAGGATGAAGGAATGTTA GTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGGAAATTCG ACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAATGAGAAGAGGATAG ATAAAGAGAGTCTCCCGCAAGTTCTAAGCATTTTTTTGTTTGTTTGTTTTGACAATTTCT ACAATTACGCGCACGCGAATGATTTTGTTTATTTTTGTTTTGTTTTGTTTAATATGTTTA GCTTCTATTGTTTCTTTTCGTTTTTTCCCCCATTTTTTTTTTAATTATGTTCCTATTTTC GTATTGGCCACGAAGGAGGGAAGTGGTACTTGTACGCGATACTCCCAGCAAGTTTGCTGC GTTGTTGTTGAAACAATCGGGGACAATGTTACACACCTACACAAGATAAAACACAAAAGA AAGTCATGTAATGGATTGCAAATCTCTAACAAAGCAAATGAAGCTACACAAACAAGCAAA A



consensusID : consensus_8238#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 571
fasta sequence
                              [GCAAGAATCGCACGAGGTGNATCATATACCGCGCGCGCACACAGCGTACGCATTGTGTTACAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCGGAAACTGGAGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAAAAAAAAAAGGATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAAGGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCAAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGAAAAGGATGAACGGAACTGTTAGTGTTGGGCAGAGGAAATGTTTGGCTGCGGAGAGTTTAGTTTTGATAAGACTGA]

[+] EMBL AL697040             [GCAAGAATCGCACGAGGTGNATCATATACCGCGCGCGCACACAGCGTACGCATTGTGTTACAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCGGAAACTGGAGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAAAAAAAAAAGGATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAAGGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCAAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGAAAAGGATGAACGGAACTGTTAGTGTTGGGCAGAGGAAATGTTTGGCTGCGGAGAGTTTAGTTTTGATAAGACTGA]
[+] EMBL AGA282792            [                                                                                                                                                                 AAACAAAAAAAAAAGGATTAAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAACATGCGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAG                                                                                                                                                                                                                                             ]


>consensus_8238#4 GCAAGAATCGCACGAGGTGNATCATATACCGCGCGCGCACACAGCGTACGCATTGTGTTA CAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCGG AAACTGGAGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAAAAAAAAAAGGATT AAAACCGGAAGCAGCGCCTGTGTCTCCGGTAGAAGTGATGAACAGTAGTGCGCAAGCAAA CATGCGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAGCGGCGAGTAGTG TGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACGAACTAGGAAAAA GGCTAGTAATAGTTTTGAAATTGTGGCGGGAGTTTGAAGGTAAAACTGTTTAAAAAATTG GCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCAAAAAGGCAAAATTTGAGTG GGCGCGAAGAAGAAGAAAAGGATGAACGGAACTGTTAGTGTTGGGCAGAGGAAATGTTTG GCTGCGGAGAGTTTAGTTTTGATAAGACTGA



consensusID : consensus_8238#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence
                              [CCGCCCACGCGTCCGAAAACTGGTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGGAAAGGATGAAGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGG]

[+] EMBL BM654175             [CCGCCCACGCGTCCGAAAACTGGTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGGAAAGGATGAAGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGG]


>consensus_8238#5 CCGCCCACGCGTCCGAAAACTGGTTAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCG TGGCGTGGCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAGGAAAGGATGA AGGAATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGA AGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8238#0      CCGCCCACGCGTCCGAAAGAAACTGTTTCTGGTGGGGTGGGGAGTGAATTGGGAAGGAGG 60
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      AAGGAGTTCGTTCGCGCGGGTGACGATTTTTTGACGCACATAGTAAGAAGTTTGAATTAG 120
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      GAGCGAAGGATTTGGACGGGAAAGGTTTGAAGCGAGGGAAAGGAGAGAGAGAGAGAGAAG 180
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      GAGGGAGAGAGGAAAGGGATAACGAGAGAAGGGTTAGGAAAAGCGAGGATAAGGAGCAGG 240
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      TTGTAATCGCTATGTACATTAGCACATGTGTATATAAGTAGTAAGGGTGCGCGCGTGTGC 300
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      AACAAAAGCGCGCGCGATCAACACCCACACACACACACACACAAATAACACACCGAGCGA 360
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      ATTACACAGGACACGCACGGCCACTGGCAGACAGAGGCGGAGTATGCTAGAAAGGTAAAA 420
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      GGCAGGTAGGAAGTAGCTGCCAAATGTATGATGTAGGGCGAGAAGAGAAGAAAACGCAGC 480
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ------------------------------------------------------------
                                                                                  

consensus_8238#0      TGCAGGAACAACAGCAAACAAAAGGGGCAGTGGGAAAGGGTGGGAATGTACTTTCGAGCT 540
consensus_8238#4      ---------------------------------------------------------GCA 3
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      ---------------------ATCCCCCAGTTATTGTTTGGTTTTGACCAATTTCTACAT 39
                                                                                  

consensus_8238#0      GTTACTAAATATACCGTAGATCATATAC-CGCGCGCGCACACAGCGTACGCATTGTGT-T 598
consensus_8238#4      AGAATCG--CACGAGGTGNATCATATAC-CGCGCGCGCACACAGCGTACGCATTGTGT-T 59
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      --CCGCGGACGCGTGGGAAAAAATTGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGT-G 57
consensus_8238#1      TTTTACGCGCACGCGATGATTTGTTTATTTGTTTGTTTGGGTTTAATATGTTTAGCTTCT 99
                                                                                  

consensus_8238#0      ACAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCA 658
consensus_8238#4      ACAAAGCCCATTGTGTAAAAACCATATATAATTGAGAGATAACCCGCATATAGGCAGGCG 119
consensus_8238#2      ------------------------------------------------------------
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      GCACGCCACAAAAGGCAAAATTTGAGTGGGCGCGAAGAAGAAG----GAAAGGATGAAGG 113
consensus_8238#1      ATTGTTTCTTTTCGTTTTTTCCCCCATTTTTTTTTTAAAT------TATGTTCCTATTTT 153
                                                                                  

consensus_8238#0      GAAACTGGGGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAACAAAAAAAAACA 718
consensus_8238#4      GAAACTGGAGGGAGACGAAATGGGATCATTTCTCAAAACGAAAAACAAAAAAAA-----A 174
consensus_8238#2      -------------GATCCCCCGAGGTNATTTCTCAAAACGAAAAACAACAAAAAAAAACA 47
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      AATGTTAGTGTTGGCAGAGGAATGGTGGCTGCGGAGAGTTAGTTTTGATAAGACTGAAGG 173
consensus_8238#1      CGTATTGGCCACGAAGGAAGTGGTACTTGTACGCGATACTCCCAGCAAGTTTACTGCGTT 213
                                                                                  

consensus_8238#0      AGGATTAAAACCGGAAGCAGCGC--CTGTGTCTCCGGTAGAAGTGA---TGAAC-AGTAG 772
consensus_8238#4      AGGATTAAAACCGGAAGCAGCGC--CTGTGTCTCCGGTAGAAGTGA---TGAAC-AGTAG 228
consensus_8238#2      AGGATTAAAACCGGAAGCAGCGC--CTGTGTCTCCGGTAGAAGTGA---TGAAC-AGTAG 101
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      AAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAATGAGAAG 233
consensus_8238#1      GTTGTTGAAAC---AATCGGGGG-ACAATGTTACACACCTACACAAGATAAAAC--ACAA 267
                                                                                  

consensus_8238#0      TGCGCAAGCAAACATGCGCGCGCGCGC--ATAAAAGAAGAATTCAAAATTCTTTGTCCAG 830
consensus_8238#4      TGCGCAAGCAAACATGCGCGCGCGCGCGCATAAAAGAAGAATTCAAAATTCTTTGTCCAG 288
consensus_8238#2      TGCGCAAGCAAACATGCGCGCGCGCGC--ATAAAAGAAGAATTCAAAATTCTTTGTCCAG 159
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      AGGATAGATAAAGAGAGTCTCCCGCAAG-TTCTAAGCATTTTTTTGTTTGTTTGTTTTGA 292
consensus_8238#1      AAGAAAGTCATGTAATGGATTGCAAATCTCTAACAAAGCAAATGAAGCTACACAAACAAG 327
                                                                                  

consensus_8238#0      CGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACG 890
consensus_8238#4      CGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACG 348
consensus_8238#2      CGGCGAGTAGTGTGGTGTGTGCCGGAAATAATTCAAGAAAGAGGAGGGGAGAGGAAAACG 219
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      CAATTTCTACAATTACGCGCAC-GCGAATGATTTTGTTTATTTTTGTTTTGTTTTGTTTA 351
consensus_8238#1      CAAAACGCTCT-CGGCGCGCTCGAACAAAGAATCGGTACGAACTATACGGATAGCAAGGA 386
                                                                                  

consensus_8238#0      AACTAGGAAAAAGGCTA-GTAATAGTTTTGAAAT---TGTGGCGGGAGTTTGAAGGTAAA 946
consensus_8238#4      AACTAGGAAAAAGGCTA-GTAATAGTTTTGAAAT---TGTGGCGGGAGTTTGAAGGTAAA 404
consensus_8238#2      AACTAGGAAAAAGGCTA-GTAATAGTTTTGAAAT---TGTGGCGGGAGTTTGAAGGTAAA 275
consensus_8238#5      ---------------------------------C---CGCC-CACGCGTCCG-----AAA 18
consensus_8238#3      A--TATGTTTAGCTTCT-ATTGTTTCTTTTCGTT---TTTTCCCCCATTTTTTTTTTAAT 405
consensus_8238#1      ATAAGGGAAACAGGGTGTGCGAGGCCGCTGGACTGAATGAAGGGTAAACCAGAGAACCAG 446
                                                                                * 

consensus_8238#0      ACTGTTTAAAAAAT-TGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACA 1005
consensus_8238#4      ACTGTTTAAAAAAT-TGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCA-A 462
consensus_8238#2      ACTGTTTAAAAAAT-TGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACA 334
consensus_8238#5      ACTGGTTAAAAAAT-TGGCGTTTGCGGGAAGGGAGGAAAACCGTGGCGTGGCACGCCACA 77
consensus_8238#3      TATGTTCCTATT-T-TCGTATTGGCCACGAAGGAGGGAAGTGGTACTTGTACGCGATACT 463
consensus_8238#1      AGCGATGGGACATTCTGGCGTGTCAGCGATCGGCGACAGTCTGCCCAGCGCCGCATCGTG 506
                         * *   *   * * *  *          ** *  *    *        * *      

consensus_8238#0      -AAAGGCAAAATT-----TGAGTGGGCGC--GAA-GAAGAAGAA-AAGGTTGAAGGAA-- 1053
consensus_8238#4      -AAAGGCAAAATT-----TGAGTGGGCGC--GAA-GAAGAAGAA-AAGGATGAACGGAAC 512
consensus_8238#2      -AAAGGCAAAATT-----TGAGTGGGCGC--NNAAGAAGAAGAACAAGGTTGAAGGAA-- 384
consensus_8238#5      -AAAGGCAAAATT-----TGAGTGGGCGC--GAA-GAAGAAGGA-AAGGATGAAGGAA-- 125
consensus_8238#3      -CCCAGCAAGTTTGC---TGCGTTGTTGTTGAAACAATCGGGGACAATGTTACACACCTA 519
consensus_8238#1      CAAAACCACGGTTCCTCATAAGCAAACGCGTGCGGCAGATAATATAATTATGGGCGAA-- 564
                            **   **     *  *     *        *      * **   *         

consensus_8238#0      TGTTAGTGTTGG-CAGANGAATGGT--GGCTGCGGAG-AGTT-AGTTTTGATAAGACTGA 1108
consensus_8238#4      TGTTAGTGTTGGGCAGAGGAAATGTTTGGCTGCGGAG-AGTTTAGTTTTGATAAGACTGA 571
consensus_8238#2      TGTTAGTGTTGG-CAGAGGAATGGT--GGCTGCGGAG-AGTT-AGTTTTGATAAGACTGA 439
consensus_8238#5      TGTTAGTGTTGG-CAGAGGAATGGT--GGCTGCGGAG-AGTT-AGTTTTGATAAGACTGA 180
consensus_8238#3      CACAAGATAAAACACAAAAGAAAGTCATGTAATGGAT-TGCAAATCTCTAACAAAGCAAA 578
consensus_8238#1      --GCAGCCTAATACAGCAGGATCAGACAAAAAAAAAGCAGGTCGGCATCGA-GAAACAGC 621
                          **              *              *   *          *  *  *   

consensus_8238#0      AGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAATGAG 1168
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      AGGAAATTCGACCACTAAAACATCACGACCACACACCGGACACACCGGACACTGAACTGA 499
consensus_8238#5      AGG--------------------------------------------------------- 183
consensus_8238#3      TGAAGCTACACAAACAAGCAAAA------------------------------------- 601
consensus_8238#1      GTAAAAATACTACACCCAAGCAACACGTTTATTTTCGTAAAACGGCTAACTCGGTGCATA 681
                                                                                  

consensus_8238#0      --AAGAGGATAG-ATAAAGAGAGTCTCCCGCNAGNTCTAAGCA----------------- 1208
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      GCAAGAGGATAG-ATAAAGAGAGTCTCCCGCAAGTTCTAAGCATTTNTTGGTNGTAGTTT 558
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      TCGAAATCACCCCGTTAAACGCGTGTGTCTTGGCTTCATGATACCATTTTGTTTAAGTTT 741
                                                                                  

consensus_8238#0      ------------------------------------------------------------
consensus_8238#4      ------------------------------------------------------------
consensus_8238#2      GACAATTTCTACAATTACGCGCACGCGAATGATTTGTCATTGTNTGGTTTTATTTAATAT 618
consensus_8238#5      ------------------------------------------------------------
consensus_8238#3      ------------------------------------------------------------
consensus_8238#1      GTTTAGAAGAAGATGATGGTAATAAAATAATAATATTTAAAAAACA-------------- 787
                                                                                  

consensus_8238#0      -----------
consensus_8238#4      -----------
consensus_8238#2      GTTTAGCTTCT 629
consensus_8238#5      -----------
consensus_8238#3      -----------
consensus_8238#1      -----------
                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)