These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1244 fasta sequence [TATAGAGAAATGATTTATATAATTATGCATACGCGTAAAGTAGGAAGTAATAGGGCAAAATAATACGGTTTAAGGAAACGGTTTACTTGTTACTTTTTCCCTGAGTGCGTGTGAGCGCCCGCCCCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCTGTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAAC-AAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCAAAGGCAAGCAAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACCCTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAGAAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACATATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTGCCGATAGAATGGATACGAAAACGAAACAAATTAAAATAAACAAATTACCTTACTAGTAATGCGAACAAACAAGCAACCAAACAAAACAAAACGAAAACCTACAAAACAAATGTGTTCAATACCGCGGGC] [+] EMBL BX626060 [TATAGAGAAATGATTTATATAATTATGCATACGCGTAAAGTAGGAAGTAATAGGGCAAAATAATACGGTTTAAGGAAACGGTTTACTTGTTACTTTTTCCCTGAGTGCGTGTGAGCGCCCGCCCCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCTGTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAAC AAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCAAAGGCAAGCAAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAA ] [+] EMBL AGA282362 [ CCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCTGTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAAC AAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAA ] [+] EMBL BM633657 [ ccGGCCAAAAGCAACACCCCGAGATAGAGCAAAAACGGGTGAAATGGAGAAAACAATATGAACAAAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGTTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGTGTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCA AAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACCCTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAATACACGAATCCATCAGATGGCACTCCC ] [-] EMBL AGA280739 [ GTTTCTGGGGTAAGGAACGGTATGAGCTAGAGACGGAATGAATCACAAACACCCCCCCGGCGGGAAACAAGTCTTATTTACAATACACTCTAGCTGCAATTACGCACTGCTGCTGCACATCTGAAATTATGTTTTGTTCTGCAAAGGCAAGCAAGGCTTAGCGCGTATAATAATTTAAGAACTTTAAAAGCGATTCGCGTCGCAGCAGCAACACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCAT ] [+] EMBL BX607947 [ GTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACACTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAGAAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACATATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTGCCGATA ] [+] EMBL BX608367 [ GAGCAAACACACGAATCCATCAGATGGCACTCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAGAAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACATATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTGCCGATAGAATGGATACGAAAACGAAACAAATTAAAATAAACAAATTACCTTACTAGTAATGCGAACAAACAAGCAACCAAACAAAACAAAACGAAAACCTACAAAACAAATGTGTTCAATACCGCGGGC] [+] EMBL BX608129 [ aaATTATATGCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTATGCTTCTACTCTCTAGCGTGCCTCAGAACCTTACTTGTAACAATTAATGG ] consensusID : consensus_8251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CCCCACCTCCTTAGCTCAGCAGAATCGCCCCGACGGNTANATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGATTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGATGNTTCTGGAGGTAAGGAACGGTATGAGCTAGAGACGGGAATGGATCACAAAAACCCCCCGGGCGGGAAACAAGTCTTATTTACAATACACTCTANCTGCAATTACGCACTGCTGCTGCACATCTGAAACTTATGTCNAACGTTCTAGCAAAGGCAAGCAAGGCCTTAGCGCGTATCAATAATCNAAGAACTTTAAACAGCGATTCGCGTCGACAGACAGCAAANACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATCGTAGGTTGGAACACTCATTAAAATCAAGCAAGCCAAGCAAAACAAAACAAACA] [+] EMBL AL696587 [CCCCACCTCCTTAGCTCAGCAGAATCGCCCCGACGGNTANATAGAGCAAAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCATGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGATTTTTGCTGTTGTATTTACCTTTATTCCTAATTTCTGTTACCTTATATACGATGNTTCTGGAGGTAAGGAACGGTATGAGCTAGAGACGGGAATGGATCACAAAAACCCCCCGGGCGGGAAACAAGTCTTATTTACAATACACTCTANCTGCAATTACGCACTGCTGCTGCACATCTGAAACTTATGTCNAACGTTCTAGCAAAGGCAAGCAAGGCCTTAGCGCGTATCAATAATCNAAGAACTTTAAACAGCGATTCGCGTCGACAGACAGCAAANACCCATGCAAGGCAAATATGTCACTAGCGCATTGCCTTTTGCATGGATCGTAGGTTGGAACACTCATTAAAATCAAGCAAGCCAAGCAAAACAAAACAAACA] consensusID : consensus_8251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [NCCCCCCCGGAGGTTTTTNAAAACTTCTAAACAGCCGATTCGCCGTCGCCAGCAGNACACCTATGCAGGCAAATATGTCACTAGCGCATTCCCTTTGCATGGATGTTCGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACACTACATATTACTCGTACCGCTAGACGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTATGTAAGTGTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTACAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATTCCGCGCATACTTATATGGCAAAACACAGCGACTGCCGGGAGAGTGTACAGTGGTCGATAGGTATCATATATGTCATCTATNGTATNATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTCTGTAACAATTAACTGGTGCAGAAGAAGAAACCAAAAGCCCAGAAANACTTGCGAGATTATTTAGGAGCACGAACGGC] [+] EMBL AL930851 [NCCCCCCCGGAGGTTTTTNAAAACTTCTAAACAGCCGATTCGCCGTCGCCAGCAGNACACCTATGCAGGCAAATATGTCACTAGCGCATTCCCTTTGCATGGATGTTCGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACACTACATATTACTCGTACCGCTAGACGGGGCGGTTAATTTTCCTTTGCTTTCTTCCTGTTATGTAAGTGTTAAACATCGAGCAAACACACGAATCCATCAGATGGCACTCCCATTACAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATTCCGCGCATACTTATATGGCAAAACACAGCGACTGCCGGGAGAGTGTACAGTGGTCGATAGGTATCATATATGTCATCTATNGTATNATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTCTGTAACAATTAACTGGTGCAGAAGAAGAAACCAAAAGCCCAGAAANACTTGCGAGATTATTTAGGAGCACGAACGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8251#0 TATAGAGAAATGATTTATATAATTATGCATACGCGTAAAGTAGGAAGTAATAGGGCAAAA 60 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 TAATACGGTTTAAGGAAACGGTTTACTTGTTACTTTTTCCCTGAGTGCGTGTGAGCGCCC 120 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 GCCCCGCACGATGTGCAAACGCGAACGTTCCCTGGACCGTTGTGTTTAATTTGAGATTCT 180 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 GTAAGAATTACAAAATATGCGCGGGCCAAAAGCAACACCCCGA------GATAG--AGCA 232 consensus_8251#1 ----------CCCCACCTCCTTAGCTCAGCAGAATCGCCCCGACGGNTANATAG--AGCA 48 consensus_8251#2 ------------NCCCCCCCGGAGGTTTTTNAAAACTTCTAAACAGCCGATTCGCCGTCG 48 * * * * * * * * * consensus_8251#0 AAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCA 292 consensus_8251#1 AAAACGGGAGAAATGGAGAAAACAATATGAACAAAAAAAATTACAAAGGAAACTTGGGCA 108 consensus_8251#2 CCAGCAGNACACCTATGCAGGCAAATATGTCACTAGCGCATTCCCTTTG---CATGGATG 105 * * * * * * * ****** * *** * * * *** consensus_8251#0 TGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAG-TTTTTGCTGT 351 consensus_8251#1 TGGGCATGCAAAATCGTGTATTATTGGAGCTCGCTTTGTAGGATTATAGATTTTTGCTGT 168 consensus_8251#2 TTCGGTTGGAACACT-CATTAAATCACACCAAGCCAAGCAAAACAAAACAAACATCACAC 164 * * ** ** * * ** * * ** * * * * * * consensus_8251#0 TGTAT-TTACCTTTATTCCTAATTTCTGTTACCTTATATACG-TGTTTCTGG-GGTAAGG 408 consensus_8251#1 TGTAT-TTACCTTTATTCCTAATTTCTGTTACCTTATATACGATGNTTCTGGAGGTAAGG 227 consensus_8251#2 TACATATTACTCGTACCGCTAGACGGGGCGGTTAATTTTCCTTTGCTTTCT----TCCTG 220 * ** **** ** *** * * * * ** ** * * consensus_8251#0 AACGGTATGAGCTAGAGACGG-AATGGATCACAAACACCCCCCCGGCGGGAAACAAGTCT 467 consensus_8251#1 AACGGTATGAGCTAGAGACGGGAATGGATCACAAAAACCCCCCGGGCGGGAAACAAGTCT 287 consensus_8251#2 TTATGTAAGTGTTAAACATCG--AGCAAACACACGAATCCATCAGATGGCACTCCCATTA 278 *** * * ** * * * * * **** * ** * * ** * * * consensus_8251#0 TATTTACAATACACTCTAGCTGCA-ATTACGCACTGCTGCTGCACATCTGAAA-TTATGT 525 consensus_8251#1 TATTTACAATACACTCTANCTGCA-ATTACGCACTGCTGCTGCACATCTGAAACTTATGT 346 consensus_8251#2 CAGCAGAGAT-CGCGTAGCGTCCACGCTACAGACTTGCATTCCGCGCAT---ACTTATAT 334 * ** * * * ** *** *** * * * * * **** * consensus_8251#0 TT--TGTTCT-GCAAAGGCAAGCAAGGC-T-TAGCGCGTAT-AATAATTTAAGAACTTTA 579 consensus_8251#1 CNAACGTTCTAGCAAAGGCAAGCAAGGCCT-TAGCGCGTATCAATAATCNAAGAACTTTA 405 consensus_8251#2 GGCAAAACACAGCGACTGCCGGGAGAGTGTACAGTGGTCGATAGGTATCATATA-TGTCA 393 ** * ** * * * * ** * * ** * * * * consensus_8251#0 AA-AGCGATTCGCGTCG-CAG-CAGCAA-CACCCATGCAAGGCAAATATGTCACTAGCGC 635 consensus_8251#1 AACAGCGATTCGCGTCGACAGACAGCAAANACCCATGCAAGGCAAATATGTCACTAGCGC 465 consensus_8251#2 TCTATNGTATNATGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTCTGTAACAA---- 449 * * * * * * * *** ** * * *** ** * consensus_8251#0 ATTGCCTTTTGCATGGATTGTTGGTTGGAACACTCATTAAATCACACCAAGCCAAGCAAA 695 consensus_8251#1 ATTGCCTTTTGCATGGATCGTAGGTTGGAACACTCATTAAAATCAAGCAAGCCAAGCAAA 525 consensus_8251#2 -TTAACTGGTGCA-GAAGAAGAAACCAAAA-GCCCAGAAANACTTGCGAGATTATTTAGG 506 ** ** **** * * ** * ** ** * * * consensus_8251#0 ACAAAACAAACATCACCCTCATATTACTCGTACCGCTAGCGGGGCGGTTAATTTTCCTTT 755 consensus_8251#1 ACAAAACAAACA------------------------------------------------ 537 consensus_8251#2 --AGCACGAACGGC---------------------------------------------- 518 * ** *** consensus_8251#0 GCTTTCTTCCTGTTTGTTTGTTTAAACATCGAGCAAACACACGAATCCATCAGATGGCAC 815 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 TCCCATTCAGCAGAGATCGCGTAGCGTCCACGCTACAGACTTGCATCCGCGATATTATAT 875 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 GCAAAACACAGCGCTGCCGGGAGAGTGTACAGTGTTGTTGGTATCATTTTCATTATGTTA 935 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 TGCTTCTACTCTCTAGCGTCCCTCAGAACCTTACTTGTAACAATTAATGGTGAGAAGAAG 995 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 AAAAAAAACCCCAGAAAATTGCGAGATTATTAGAGCACGAAGGCAAAACACACACACACA 1055 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 TATTCGCAAGCGACCAGAACATGGCAAACTACGTTTTGCACAGGGGCTGAACGCGTAGTG 1115 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 CCGATAGAATGGATACGAAAACGAAACAAATTAAAATAAACAAATTACCTTACTAGTAAT 1175 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 GCGAACAAACAAGCAACCAAACAAAACAAAACGAAAACCTACAAAACAAATGTGTTCAAT 1235 consensus_8251#1 ------------------------------------------------------------ consensus_8251#2 ------------------------------------------------------------ consensus_8251#0 ACCGCGGGC 1244 consensus_8251#1 --------- consensus_8251#2 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||