These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1225 fasta sequence [GCGGATCGTTTACCACACTGTGCAGTTTTCGAAATGTATAGCCGGCGGTACGTAGCTTGTGGTTTGCTTTGCTTGCTGGTGATTGCCATCGACCAGGGCCATGGACAGGAGCACAAACCGTGCACCACGCCAAACGGGACCGCCGGACGCTGTGTACGGGTACGTGAGTGTGGCTACGTTCTTGACTTACTGCGGAAGGATCTGTTTGCGCACAGCGATACCGTTCACCTGGAGGGGCTGCAGTGTGGCACACGGCCCGATGGAGGGGCTCTCGTATGCTGTCCTGCGTTTGTGAACGAGCCGAACTGTGGGCCGTCCGTTTTTGGCGTTCGTATCATCGGTGGCAACGATACGGAGCTGGGCGAATTTCCTTGGATGGCGTTGCTGCGGTTTCAGGCACGCAATCGTAAGATTCACGGCAACTGTGGCGCATCACTAGTTAGCAAGCGGTTTGTGCTGAGTGCTGCCCACTGTTTCACCGCAGCAAAGAGCAAGGGATGGAAAATCCACTCGGTGCGCGTTGCGGAATGGAATTTCATGAACCACCGTGGAAGCAAAGACTGCAAGCAGGTCAAAGGCTACGACGTACCGATCTGCCGGAAGGATTACGACGTCGCCCGCTTTGTGCAGCATCCCGAGTATCGCGTTAACGCGGGCGTACACGTGAACGATATTGTGCTGATCGAACTGGCAGCGGACGTGGAGTACAATGTCTTTGTCGCACCGATATGTTTGCCCGTTTCCAACGACACGGCCCAGTTACCGTGGGGGTCGTCGGATGATCCAGAAATAGAGTACACAGCAGCAGGCTGGGGTTCGACCGAATCAGGGAAGGAGTCCACCGGTATGTCGTACCAGCTGAAGCAGATCAATCTTCGCGCATTCAACAAGGAGCGGTGCAAGAAGCTGTTCCAGGTGCCCAGTGGGGTCGGTGTTGGGTTGGGCCATATATGTGCTGGTGGCATTCGCGATGAGGACACGTGCCATGGGGATTCGGGCGGGCCGCTGATGGAAGCGGTGGGTGGTGTGTGGTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTAAAAAAAAA] [+] EMBL AGA276487 [GCGGATCGTTTACCACACTGTGCAGTTTTCGAAATGTATAGCCGGCGGTACGTAGCTTGTGGTTTGCTTTGCTTGCTGGTGATTGCCATCGACCAGGGCCATGGACAGGAGCACAAACCGTGCACCACGCCAAACGGGACCGCCGGACGCTGTGTACGGGTACGTGAGTGTGGCTACGTTCTTGACTTACTGCGGAAGGATCTGTTTGCGCACAGCGATACCGTTCACCTGGAGGGGCTGCAGTGTGGCACACGGCCCGATGGAGGGGCTCTCGTATGCTGTCCTGCGTTTGTGAACGAGCCGAACTGTGGGCCGTCCGTTTTTGGCGTTCGTATCATCGGTGGCAACGATACGGAGCTGGGCGAATTTCCTTGGATGGCGTTGCTGCGGTTTCAGGCACGCAATCGTAAGATTCACGGCAACTGTGGCGCATCACTAGTTAGCAAGCGGTTTGTGCTGAGTGCTGCCCACTGTTTCACCGCAGCAAAGAGCAAGGGATGGAAAATCCACTCGGTGCGCGTTGCGGAATGGAATTTCATGAACCACCGTGGAAGCAAAGACTGCAAGCAGGTCAAAGGCTACGACGTACCGATCTGCCGGAAGGATTACGACGTCGCCCGCTTTGTGCAGCATCCCGAGTATCGCGTTAACGCGGGCGTACACGTGAACGATATTGTGCTGATCGAACTGGCAGCGGACGTGGAGTACAATGTCTTTGTCGCACCGATATGTTTGCCCGTTTCCAACGACACGGCCCAGTTACCGTGGGGGTCGTCGGATGATCCAGAAATAGAGTACACAGCAGCAGGCTGGGGTTCGACCGAATCAGGGAAGGAGTCCACCGGTATGTCGTACCAGCTGAAGCAGATCAATCTTCGCGCATTCAACAAGGAGCGGTGCAAGAAGCTGTTCCAGGTGCCCAGTGGGGTCGGTGTTGGGTTGGGCCATATATGTGCTGGTGGCATTCGCGATGAGGACACGTGCCATGGGGATTCGGGCGGGCCGCTGATGGAAGCGGTGGGTGGTGTGTGGTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTAAAAAAA ] [+] EMBL AGA284904 [ GGTACGTAGCTTGTGGTTTGCTTTGCTTGCTGGTGATTGCCATCGACCAGGGCCATGGACAGGAGCACAAACCGTGCATCACGCCAAACTGGACCGCCGGACGCTGTGTACGGGTACGTGCGTGTGG ] [+] EMBL AGA282211 [ CGACCAGGGCCATGGACAGGAGCACAAACCGTGCACCACGCCAAACGGGACCGCCGGACGCTGTGTACGGGTACGTGAGTGTGGCTACGTTCTTGACTTACTGCGGAAGGATCTGTTTGCGCACAGCGATACCGTTCACCTGGAGGGGCTGCAGTGTGGCACACGGCCCGATGGAGGGGCTCTCGTATGCTGTCCTGCGTTTGTGAACGAGCCGAACTGTGGGCCGTCCGTTTTTGGCGTTCGTATCATCGGTGGCAACGATACGGAGCTGGGCGAATTTCCTTGGATGGCGTTGCTGCGGTTTCAGGCACGCAATCGTAAGATTCACG ] [+] EMBL AGA284885 [ GCTGTGTACGGGTACGTGAGTGTGGCTACGTTCTTGACTTACTGCGGAAGGATCTGTTTGCGCACAGCGATACCGTTCACCTGGAGGGGCTGCAGTGTGGCACACGGCCCGATGGAGGGGCTCTCGTATGCTGTCCTGCGTTTGTGAACGAGCCGAACTGTGGGCCGTCCGTTTTTGGCG ] [-] EMBL AGA280508 [ GCGCATTCAACAAGGAGCGGTGCAAGAAGCTGTTCCAGGTGCCCAGTGGGGTCGGTGTTGGGTTGGGCCATATATGTGCTGGTGGCATTCGCGATGAGGACACGTGCCATGGGGATTCGGGCGGGCCGCTGATGGAAGCGGTGGGTGGTGTGTGGTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTAAAAAAAA ] [-] EMBL AGA283596 [ GGGTCGGTGTTGGGTTGGGCCATATATGTGCTGGTGGCATTCGCGATGAGGACACGTGCCATGGGGATTCGGGCGGCCCGCTGATGGAAGCGGTGGGTGGTGTGTGGTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTTAAAAAAAA] [-] EMBL AGA280728 [ CTGGTGGCATTCGCGATGAGGACACGTGCCATGGGGATTCGGGCGGGCCGCTGATGGAAGCGGTGGGTGGTGTGTGGTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTAAAAAAAA ] consensusID : consensus_8256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 228 fasta sequence [CCGCCACCATTTTTTTTTTTTTTTTTTTGTGTGTTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTAAAAAAAAAA] [-] EMBL AGA284496 [CCGCCACCATTTTTTTTTTTTTTTTTTTGTGTGTTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTAAAAAAAA ] [+] EMBL AGA285799 [ TTTTTTTTTTTTTTTTTTTGTGTGTTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGACGGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATGTTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATGAGGACTTGTTGAGTGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8256#0 GCGGATCGTTTACCACACTGTGCAGTTTTCGAAATGTATAGCCGGCGGTACGTAGCTTGT 60 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 GGTTTGCTTTGCTTGCTGGTGATTGCCATCGACCAGGGCCATGGACAGGAGCACAAACCG 120 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 TGCACCACGCCAAACGGGACCGCCGGACGCTGTGTACGGGTACGTGAGTGTGGCTACGTT 180 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 CTTGACTTACTGCGGAAGGATCTGTTTGCGCACAGCGATACCGTTCACCTGGAGGGGCTG 240 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 CAGTGTGGCACACGGCCCGATGGAGGGGCTCTCGTATGCTGTCCTGCGTTTGTGAACGAG 300 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 CCGAACTGTGGGCCGTCCGTTTTTGGCGTTCGTATCATCGGTGGCAACGATACGGAGCTG 360 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 GGCGAATTTCCTTGGATGGCGTTGCTGCGGTTTCAGGCACGCAATCGTAAGATTCACGGC 420 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 AACTGTGGCGCATCACTAGTTAGCAAGCGGTTTGTGCTGAGTGCTGCCCACTGTTTCACC 480 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 GCAGCAAAGAGCAAGGGATGGAAAATCCACTCGGTGCGCGTTGCGGAATGGAATTTCATG 540 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 AACCACCGTGGAAGCAAAGACTGCAAGCAGGTCAAAGGCTACGACGTACCGATCTGCCGG 600 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 AAGGATTACGACGTCGCCCGCTTTGTGCAGCATCCCGAGTATCGCGTTAACGCGGGCGTA 660 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 CACGTGAACGATATTGTGCTGATCGAACTGGCAGCGGACGTGGAGTACAATGTCTTTGTC 720 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 GCACCGATATGTTTGCCCGTTTCCAACGACACGGCCCAGTTACCGTGGGGGTCGTCGGAT 780 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 GATCCAGAAATAGAGTACACAGCAGCAGGCTGGGGTTCGACCGAATCAGGGAAGGAGTCC 840 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 ACCGGTATGTCGTACCAGCTGAAGCAGATCAATCTTCGCGCATTCAACAAGGAGCGGTGC 900 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 AAGAAGCTGTTCCAGGTGCCCAGTGGGGTCGGTGTTGGGTTGGGCCATATATGTGCTGGT 960 consensus_8256#1 ------------------------------------------------------------ consensus_8256#0 GGCATTCGCGATGAGGACACGTGCCATGGGGATTCGGGCGGGCCGCTGATGGAAGCGGTG 1020 consensus_8256#1 --------------------------------------CCGCCACCATTTTTTTTTTTTT 22 * * * * * * consensus_8256#0 GGTGGTGTGTGGTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGAC 1080 consensus_8256#1 TTTTTTGTGTGTTATTTGGCCGGCATAACCAGCTTCGGGTGGCCTCGCTGTGGCCGGGAC 82 * ****** ************************************************ consensus_8256#0 GGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATG 1140 consensus_8256#1 GGTGTGCCAGGGGTGTACACGAACATTAGCCACTACATGGGATGGCTGGAGCGGGAGATG 142 ************************************************************ consensus_8256#0 TTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATG 1200 consensus_8256#1 TTCCGTGGAATTTTGGCGTAGAATTTAGTTCTGCTCGCGCTGTTCGGTAAACAATAAATG 202 ************************************************************ consensus_8256#0 AGGACTTGTTGAGTGTAAAAAAAAA- 1225 consensus_8256#1 AGGACTTGTTGAGTGTAAAAAAAAAA 228 ************************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||