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Anopheles gambiae
cluster # 8266 cluster # 8266       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8266#0 length = 2506 sequences # 6  
consensus_8266#1 length = 671 sequences # 2  
consensus_8266#2 length = 600 sequences # 1  

consensusID : consensus_8266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2506
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCTGGACCGCCAATGGGAAAATCATATTCCGCGACGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGACACAAAAACACTGCTCGGAGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCTGTCGCCCGACGGCAAGTATCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAGCTACCTGGCGATCTACGATATTGTGGATATGGCGACGAAGCAAGTCATTCCGATTAATGTCGGTGGACAGAGGCGTGCCCTCAATCTCGTTGAATGGAGCCCCGTCGGCCACTCGTTCGTGTTCGTGTACCAGAACAACCTCTACTACCGCGAAACGCCGACCTCGCCCGAGATCCAGATCACCACCGATGGTAGCCCGAGCGTGTACAACGGCATCCCGGACTGGGTGTACGAGGAGGAAGTGTTCTCGACCAACATTGCCACCTGGTTCTCGCCGGACGGCAAGCGTATCGCGTTCATACGCTTCAACGACACGGAAACGCCACTGATGAAGATCCCAATCTATGGGCCACCGGGCAACCCGGACTATCAGTATCCACGCGAGCTGACGCTGCACTACCCGAAGGTGGGCACCAAAAACCCGGAGGTGCATCTGTTCCAGTACGATCTGACCGGGCGGAAGTTGGCGGAGATTGAACCACCGGTTGAGCTGGTGAATCAGCAGCGCGATCACATCATTACGAGCGTTGGCTGGACGAAGGAACGGCTCGTGACGATCTGGATGAATCGTGTGCAGAACCATGCCATTATCAAGTCATGCCTGCCCGAGTCTGGCCAGTGTATGACGGTGCACGAGATTAAGGAAGAATCCGGATGGTTGGATCTATTTAGTGCGCCGGTGTTTAATGGGGATGGAACACAGTTCCTGGTGATCTCCTCCCAGGCCCAGGGTACTGCCGGTGGATTTAAGCACGTGACGATGATCTCCACGACGGAACGGTCGGCCGTCCCGGTGACTAGCGGTACGTTTGTCGTGCAGGAGATTCTGCGCTGGGATGCAGAGAGTAATTTGATCTTTTACACGGCCAACACGGGCAACGAATCGCACGTGCTGCATGTGTACGCGATCGAGGGCCGACCGAATGCTCCCGCCGGGCAGTGCTTGACGTGCGACACAGAGGTGACCGCAAAGCAGAGCTTCTTCAATGCGCAGATGAGCCCGAACGGTGGTAACTACTTGGTGCTGGAAGCACGCGGCCCCAACATTCCCTGGACGCACGTGTATCGGTGGAGCGTTGCTGAGAAGGTTGTGCAGCTGAAGCTGATGAAGATCTGGGAATCGAACGATCATCTGGAGCGTGCACTCAAGGGCAAAGCAATCCCACGGGTCGAGATACACGAGCTGGATCTTGGCAATGGGTTTACCGCGAAGGCGATGCTGCTCATTCCACCCGGCACCAACACCTCCAGCAGTGCGGTCAAGCATCCGATGCTGGTGGACGTGTACGGTGGGCCCAACTCGGCCAACGTCGTCGGCACCTGGTCGATTGGTTGGGGCACCCATCTCGCCTCGAACCGGTCCGTGGTGTACGCGAAAGATTGATGGCCGCGGCAGTGGACTGCGCGGCGATCGGCTCATGTACCAGATCTACCGTAAGCTCGGTACGGTCGAGGTACAGGATCAGATTACCGGCGCTCGCAAGCTAGCCGAACAGCTGCCGTTTGTCGATCCGCAGCGTATTGCTATCTGGGGCTGGAGTTACGGTGGTTACGCATCGGCCATGGCACTAGCGCAGGATACGCAGCACGTGTTCCAGTGTGCCGTGTCGGTGGCGCCGGTAACGGATTGGCTGTTTTACGATTCGATCTACACCGAACGGTACATGGGCCTGCCGACGCTAACCGACAACCGGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGCAATCGGACGTACCTGCTGGTGCACGGTACGTACGATGACAACGTCCACTACCAGCAGGCGATGCAGCTGGCCCGGGGCGCTCGAAACGCACGACATCATGTTCAAGCAGGTGAGCTACCCGGACGAGGATCACAGTCTGGCTGGTGTGCGGCCCCATCTTTACCATACGCTTGGTAAATTCTTCAGCGAGTGCTTAAAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGCATTCCAAAACCCGCACCCGGTCGGTACTTTTCGCGCTCCTCGGTTTGCTTCTTTGCAGTGATTTTGGAGGGTGCGATGAGATTCGCCTATATACAGCACAAACGATCCCTGTACATACTATAAGATAAGACTAACTCGGAAGAAGCCAGGAGGGGTGTTTGTGAAGCAAGAGACAAGGTCCTCCACAAAAGCGAAGTGGAGCATTTGGTGTCTATAATGTGGAGAGGAGAAAAGGAGACAAAGCAGGGACAACGGCATTTGTTGTGAGAACAGATTTTAAAACACTATATGTACATAAGGAGAGAGCGAA]

[+] EMBL BM585638             [CCGCCCACGCGTCCGCCCACGCGTCCGCTGGACCGCCAATGGGAAAATCATATTCCGCGACGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGACACAAAAACACTGCTCGGAGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCTGTCGCCCGACGGCAAGTATCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAGCTACCTGGCGATCTACGATATTGTGGATATGGCGACGAAGCAAGTCATTCCGATTAATGTCGGTGGACAGAGGCGTGCCCTCAATCTCGTTGAATGGAGCCCCGTCGGCCACTCGTTCGTGTTCGTGTACCAGAACAACCTCTACTACCGCGAAACGCCGACCTCGCCCGAGATCCAGATCACCACCGATGGTAGCCCGAGCGTGTACAACGGCATCCCGGACTGGGTGTACGAGGAGGAAGTGTTCTCGACCAACATTGCCACCTGGTTCTCGCCGGACGGCAAGCGTATCGCGTTCATACGCTTCAACGACACGGAAACGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM599853             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccgGCCGGACGGCAAGCGCATCGCGTTCATACGCTTTAACGACACGGAAACGCCACTGATGAAGATCCCAATCTATGGGCCACCGGGCAACCCGGACTATCAGTATCCACGCGAGCTGACGCTGCACTACCCGAAGGTGGGCACCAAAAACCCGGAGGTGCATCTGTTCCAGTACGATCTGACCGGGCGGAAGTTGGCGGAGATTGAACCACCGGTTGAGCTGGTGAATCAGCAGCGCGATCACATCATTACGAGCGTTGGCTGGACGAAGGAACGGCTCGTGACGATCTGGATGAATCGTGTGCAGAACCATGCCATTATCAAGTCATGCCTGCCCGAGTCTGGCCAGTGTATGACGGTGCACGAGATTAAGGAAGAATCCGGATGGTTGGATCTATTTAGTGCGCCGGTGTTTAATGGGGATGGAACACAGTTCCTGGTGATCTCCTCCCAGGCCCAGGGTACTGCCGGTGGATTTAAGCACGTGACGATGATCTCCACGACGGAACGGTCGGCCGTCCCGGTGACTAGCGGTACGTTTGTCGTGCAGGAGATTCTGCGCTGGGATGCAGAGAGTAATTTGATCTTTTACACGGCCAACACGGGCAACGAATCGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM649834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCCGGGCAACCCGGACTATCAGTATCCACGCGAGCTGACGCTGCACTACCCGAAGGTGGGCACCAAAAACCCGGAGGTGCATCTGTTCCAGTACGATCTGACCGGGCGGAAGTTGGCGGAGATTGAACCACCGGTTGAGCTGGTGAATCAGCAGCGCGATCACATCATTACGAGCGTTGGCTGGACGAAGGAACGGCTCGTGACGATCTGGATGAATCGTGTGCAGAACCATGCCATTATCAAGTCATGCCTGCCCGAGTCTGGCCAGTGTATGACGGTGCACGAGATTAAGGAAGAATCCGGATGGTTGGATCTATTTAGTGCGCCGGTGTTTAATGGGGATGGAACACAGTTCCTGGTGATCTCCTCCCAGGCCCAGGGTACTGCCGGTGGATTTAAGCACGTGACGATGATCTCCACGACGGAACGGTCGGCCGTCCCGGTGACTAGCGGTACGTTTGTCGTGCAGGAGATTCTGCGCTGGGATGCAGAGAGTAATTTGATCTTTTACACGGCCAACACGGCCAACGAATCGCACGTGCTGCATGTGTACGCGATCGAGGGCCGACCGAATGCTCCCGCCGGGCAGTGCTTGACGTGCGACACAGAGGTGACCGCAAAGCAGAGCTTCTTCAATGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM628869             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgGCACGTGCTGCATGTGTACGCGATCGAGGGCCGACCGAATGCTCCCGCCGGGCAGTGCTTGACGTGCGACACAGAGGTGAGCGCAAAGCAGAGCTTCTTCAATGCGCAGATGAGCCCGAACGGTGGTAACTACTTGGTGCTGGAAGCACGCGGCCCCAACATTCCCTGGACGCACGTGTATCGGTGGAGCGTTGCTGAGAAGGTTGTGCAGCTGAAGCTGATGAAGATCTGGGAATCGAACGATCATCTGGAGCGTGCACTCAAGGGCAAAGCAATCCCACGGGTCGAGATACACGAGCTGGATCTTGGCAATGGGTTTACCGCGAAGGCGATGCTGCTCATTCCACCCGGCACCAACACCTCCAGCAGTGCGGTCAAGCATCCGATGCTGGTGGACGTGTACGGTGGGCCCAACTCGGCCAACGTCGTCGGCACCTGGTCGATTGGTTGGGGCACCCATCTCGCCTCGAACCGGTCCGTGGTGTACGCGAAAGATTGATGGCCGCGGCAGTGGACTGCGCGGCGATCGGCTCATGTACCAGATCTACCGTAAGCTCGGTACGGTCGAGGTACAGGATCAGATTACCGGCGCTCGCAAGCTAGCCGAACAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM640656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgGCGCTCAAGGGGAAAGCGATCCCACGCGTCGAAATACACGAGCTGGATCTTGGCAATGGGTTTACCGCGAAGGCAATGCTGCTCATACCACCCGGCACCAACACCTCCAGCAGTGCGGTCAAGCATCCGATGCTGGTGGACGTGTACGGTGGGCCCAACTCGGCCAACGTCGTCGGCACCTGGTCGATCGGTTGGGGCACCCATCTCGCCTCGAACCGGTCCGTGGTGTACGCG AAGATTGATGGCCGCGGCAGTGGACTGCGCGGCGATCGGCTCATGTACCAGATCTACCGTAAGCTCGGTACGGTCGAGGTACAGGATCAGATTACCGGCGCTCGCAAGCTAGCCGAACAGTTGCCGTTTGTCGATCCGCAGCGTATTGCTATCTGGGGCTGGAGTTACGGTGGTTACGCATCGGCCATGGCACTAGCGCAGGATACGCAGCACGTGTTCCAGTGTGCCGTGTCGGTGGCGCCGGTAACGGATTGGCTGTTTTACGATTCGATCTACACCGAACGGTACATGGGCCTGCCGACGCTAACCGACAACCGGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGCAATCGGACGTACCTGCTGGTGCACGGTACGTACGATGACAACGTCCACTACCAGCAGGCGATGCAGCTGGCCCGGGGCGCTCGAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX620544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCTGCCGACGCTAACCGACNNCCGGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGCAATCGGACGTACCTGCTGGTGCACGGTACGTACGATGACAACGTCCACTACCAGCAGGCGATGCAGCTGGCCC GGGCGCTCGAAACGCACGACATCATGTTCAAGCAGGTGAGCTACCCGGACGAGGATCACAGTCTGGCTGGTGTGCGGCCCCATCTTTACCATACGCTTGGTAAATTCTTCAGCGAGTGCTTAAAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGCATTCCAAAACCCGCACCCGGTCGGTACTTTTCGCGCTCCTCGGTTTGCTTCTTTGCAGTGATTTTGGAGGGTGCGATGAGATTCGCCTATATACAGCACAAACGATCCCTGTACATACTATAAGATAAGACTAACTCGGAAGAAGCCAGGAGGGGTGTTTGTGAAGCAAGAGACAAGGTCCTCCACAAAAGCGAAGTGGAGCATTTGGTGTCTATAATGTGGAGAGGAGAAAAGGAGACAAAGCAGGGACAACGGCATTTGTTGTGAGAACAGATTTTAAAACACTATATGTACATAAGGAGAGAGCGAA]


>consensus_8266#0 CCGCCCACGCGTCCGCCCACGCGTCCGCTGGACCGCCAATGGGAAAATCATATTCCGCGA CGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGACACAAAAACACTGCTCGG AGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCTGTCGCCCGACGGCAAGTA TCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAGCTACCTGGCGATCTACGA TATTGTGGATATGGCGACGAAGCAAGTCATTCCGATTAATGTCGGTGGACAGAGGCGTGC CCTCAATCTCGTTGAATGGAGCCCCGTCGGCCACTCGTTCGTGTTCGTGTACCAGAACAA CCTCTACTACCGCGAAACGCCGACCTCGCCCGAGATCCAGATCACCACCGATGGTAGCCC GAGCGTGTACAACGGCATCCCGGACTGGGTGTACGAGGAGGAAGTGTTCTCGACCAACAT TGCCACCTGGTTCTCGCCGGACGGCAAGCGTATCGCGTTCATACGCTTCAACGACACGGA AACGCCACTGATGAAGATCCCAATCTATGGGCCACCGGGCAACCCGGACTATCAGTATCC ACGCGAGCTGACGCTGCACTACCCGAAGGTGGGCACCAAAAACCCGGAGGTGCATCTGTT CCAGTACGATCTGACCGGGCGGAAGTTGGCGGAGATTGAACCACCGGTTGAGCTGGTGAA TCAGCAGCGCGATCACATCATTACGAGCGTTGGCTGGACGAAGGAACGGCTCGTGACGAT CTGGATGAATCGTGTGCAGAACCATGCCATTATCAAGTCATGCCTGCCCGAGTCTGGCCA GTGTATGACGGTGCACGAGATTAAGGAAGAATCCGGATGGTTGGATCTATTTAGTGCGCC GGTGTTTAATGGGGATGGAACACAGTTCCTGGTGATCTCCTCCCAGGCCCAGGGTACTGC CGGTGGATTTAAGCACGTGACGATGATCTCCACGACGGAACGGTCGGCCGTCCCGGTGAC TAGCGGTACGTTTGTCGTGCAGGAGATTCTGCGCTGGGATGCAGAGAGTAATTTGATCTT TTACACGGCCAACACGGGCAACGAATCGCACGTGCTGCATGTGTACGCGATCGAGGGCCG ACCGAATGCTCCCGCCGGGCAGTGCTTGACGTGCGACACAGAGGTGACCGCAAAGCAGAG CTTCTTCAATGCGCAGATGAGCCCGAACGGTGGTAACTACTTGGTGCTGGAAGCACGCGG CCCCAACATTCCCTGGACGCACGTGTATCGGTGGAGCGTTGCTGAGAAGGTTGTGCAGCT GAAGCTGATGAAGATCTGGGAATCGAACGATCATCTGGAGCGTGCACTCAAGGGCAAAGC AATCCCACGGGTCGAGATACACGAGCTGGATCTTGGCAATGGGTTTACCGCGAAGGCGAT GCTGCTCATTCCACCCGGCACCAACACCTCCAGCAGTGCGGTCAAGCATCCGATGCTGGT GGACGTGTACGGTGGGCCCAACTCGGCCAACGTCGTCGGCACCTGGTCGATTGGTTGGGG CACCCATCTCGCCTCGAACCGGTCCGTGGTGTACGCGAAAGATTGATGGCCGCGGCAGTG GACTGCGCGGCGATCGGCTCATGTACCAGATCTACCGTAAGCTCGGTACGGTCGAGGTAC AGGATCAGATTACCGGCGCTCGCAAGCTAGCCGAACAGCTGCCGTTTGTCGATCCGCAGC GTATTGCTATCTGGGGCTGGAGTTACGGTGGTTACGCATCGGCCATGGCACTAGCGCAGG ATACGCAGCACGTGTTCCAGTGTGCCGTGTCGGTGGCGCCGGTAACGGATTGGCTGTTTT ACGATTCGATCTACACCGAACGGTACATGGGCCTGCCGACGCTAACCGACAACCGGGCCG GGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGCAATCGGACGTACCTGC TGGTGCACGGTACGTACGATGACAACGTCCACTACCAGCAGGCGATGCAGCTGGCCCGGG GCGCTCGAAACGCACGACATCATGTTCAAGCAGGTGAGCTACCCGGACGAGGATCACAGT CTGGCTGGTGTGCGGCCCCATCTTTACCATACGCTTGGTAAATTCTTCAGCGAGTGCTTA AAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGCATTCCAAAACCCGCACCCGGTCGG TACTTTTCGCGCTCCTCGGTTTGCTTCTTTGCAGTGATTTTGGAGGGTGCGATGAGATTC GCCTATATACAGCACAAACGATCCCTGTACATACTATAAGATAAGACTAACTCGGAAGAA GCCAGGAGGGGTGTTTGTGAAGCAAGAGACAAGGTCCTCCACAAAAGCGAAGTGGAGCAT TTGGTGTCTATAATGTGGAGAGGAGAAAAGGAGACAAAGCAGGGACAACGGCATTTGTTG TGAGAACAGATTTTAAAACACTATATGTACATAAGGAGAGAGCGAA



consensusID : consensus_8266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 671
fasta sequence
                              [CCGCCCGTGGTTTAGTGAGCAGACGCAGAGACGCGCGTCCACTTTTGGCGTGTGTCCACAGTGTCCACCGGGTCTCGGGTCTCGGTTTTTAAGTGTTGCGTGAAGAGTAGTATCGTTGTGAGCTGTTTACTAAAGATCGTGGACACTAAGCAGTGTGACTTGGGTGTGAGAACGAGACGAAGGAGAGCCCTTCAAAATGGCAGCATCCACTGGCAACAGCATCGAGATCGGACATTCGGATCAGGAACTCGTTGGCTCTGGCAAGCGGAACCTTCGCCGATATCTTCTCCTCGGTACGTTGGCCGTCATCCTTACCGTCGTTGCCGTCGCACTCGTGGTCGTCCTCACCGCTAGCAATGAGGAGGAAAGCGGTCCCGAGACGGCTCCCATCGTACGTGAAGGTGAACCGATCACGTTGGATGACTTCCTGCAGGGGCGACTGTCAGCGAGCGGCTTTACCGGCACCTGGACCGCCAATGGGAAAATCATATTCCGCGACGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGACACAAAAACACTGCTCGGAGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCTGTCGCCCGACGGCAAGTATCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAG-CTACCTGGCGA]

[+] EMBL BM646359             [CCGCCCGTGGTTTAGTGAGCAGACGCAGAGACGCGCGTCCACTTTTGGCGTGTGTCCACAGTGTCCACCGGGTCTCGGGTCTCGGTTTTTAAGTGTTGCGTGAAGAGTAGTATCGTTGTGAGCTGTTTACTAAAGATCGTGGACACTAAGCAGTGTGACTTGGGTGTGAGAACGAGACGAAGGAGAGCCCTTCAAAATGGCAGCATCCACTGGCAACAGCATCGAGATCGGACATTCGGATCAGGAACTCGTTGGCTCTGGCAAGCGGAACCTTCGCCGATATCTTCTCCTCGGTACGTTGGCCGTCATCCTTACCGTCGTTGCCGTCGCACTCGTGGTCGTCCTCACCGCTAGCAATGAGGAGGAAAGCGGTCCCGAGACGGCTCCCATCGTACGTGAAGGTGAACCGATCACGTTGGATGACTTCCTGCAGGGGCGACTGTCAGCGAGCGGCTTTACCGGCACCTGGACCGCCAATGGGAAAATCATATTCCGCGACGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGACACAAAAACACTGCTCGGAGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCTGTCGCCCGACGGCAAGTATCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAG CTACCTGGCGA]
[+] EMBL BM579405             [              ccGAGCAGACGCAGAGACGCGCGTCCACTTTTGGCGTGTGTCCACAGTGTCCACCGGGTCTCGGGTCTCGGTTTTTAAGTGTTGCGTGAAGAGTAGTATCGTTGTGAGCTGTTTACTAAAGATCGTGGACACTAAGCAGTGTGACTTGGGTGTGAGAACGAGACGAAGGAGAGCCCTTCAAAATGGCAGCATCCACTGGCAACAGCATCGAGATCGGACATTCGGATCAGGAACTCGTTGGCTCTGGCAAGCGGAACCTTCGCCGATATCTTCTCCTCGGTACGTTGGCCGTCATCCTTACCGTCGTTGCCGTCGCACTCGTGGTCGTCCTCACCGCTAGCAATGAGGAGGAAAGCGGTCCCGAGACGGCTCCCATCGTACGTGAAGGTGAACCGATCACGTTGGATGACTTCCTGCAGGGGCGACTGTCAGCGAGCGGCTTTACCGGCACCTGGACCGCCAATGGGAAAATCATATTCCGCGACGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGACACAAAAACACTGCTCGGAGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCTGTCGCCCGACGGCAAGTATCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAGACTACCTGGCG ]


>consensus_8266#1 CCGCCCGTGGTTTAGTGAGCAGACGCAGAGACGCGCGTCCACTTTTGGCGTGTGTCCACA GTGTCCACCGGGTCTCGGGTCTCGGTTTTTAAGTGTTGCGTGAAGAGTAGTATCGTTGTG AGCTGTTTACTAAAGATCGTGGACACTAAGCAGTGTGACTTGGGTGTGAGAACGAGACGA AGGAGAGCCCTTCAAAATGGCAGCATCCACTGGCAACAGCATCGAGATCGGACATTCGGA TCAGGAACTCGTTGGCTCTGGCAAGCGGAACCTTCGCCGATATCTTCTCCTCGGTACGTT GGCCGTCATCCTTACCGTCGTTGCCGTCGCACTCGTGGTCGTCCTCACCGCTAGCAATGA GGAGGAAAGCGGTCCCGAGACGGCTCCCATCGTACGTGAAGGTGAACCGATCACGTTGGA TGACTTCCTGCAGGGGCGACTGTCAGCGAGCGGCTTTACCGGCACCTGGACCGCCAATGG GAAAATCATATTCCGCGACGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGA CACAAAAACACTGCTCGGAGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCT GTCGCCCGACGGCAAGTATCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAG CTACCTGGCGA



consensusID : consensus_8266#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence
                              [CCACGCGTCCGCGCAGCGTATCGCTATCTGGGGCTGGAGTTACGGAGGTTACGCATCGGCCATGGCACTAGCGCAGGATACGCAGCACGTGTTCCAGTGTGCCGTGTCGGTGGCGCCGGTAACGGATTGGCTGTTTTACGATTCGATCTACACCGAACGGTACATGGGCCTGCCGACGCTAACCGACAACCGGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGCAATCGGACGTACCTGCTGGTGCACGGTACGTACGATGACAACGTCCACTACCAGCAGGCGATGCAGCTGGCCCGGGCGCTCGAAACGCACGACATCATGTTCAAGCAGGTGAGCTACCCGGACGAGGATCACAGTCTGGCCGGTGTGCGACCCCATCTTTACCATACGCTTGGTAAATTCTTCAGCGAGTGCTTAAAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGCATTCCAAAACCCGCACCCGGTCGGTACTTTTCGCGCTCCTCGGGTTGCTTCTTTGCAGTGATTTTGGAGGGTGAGATGAGATTCGCCTACATACAGCACAAACGATCCCTGTACATACTATAAGATAA]

[+] EMBL BM615849             [CCACGCGTCCGCGCAGCGTATCGCTATCTGGGGCTGGAGTTACGGAGGTTACGCATCGGCCATGGCACTAGCGCAGGATACGCAGCACGTGTTCCAGTGTGCCGTGTCGGTGGCGCCGGTAACGGATTGGCTGTTTTACGATTCGATCTACACCGAACGGTACATGGGCCTGCCGACGCTAACCGACAACCGGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGCAATCGGACGTACCTGCTGGTGCACGGTACGTACGATGACAACGTCCACTACCAGCAGGCGATGCAGCTGGCCCGGGCGCTCGAAACGCACGACATCATGTTCAAGCAGGTGAGCTACCCGGACGAGGATCACAGTCTGGCCGGTGTGCGACCCCATCTTTACCATACGCTTGGTAAATTCTTCAGCGAGTGCTTAAAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGCATTCCAAAACCCGCACCCGGTCGGTACTTTTCGCGCTCCTCGGGTTGCTTCTTTGCAGTGATTTTGGAGGGTGAGATGAGATTCGCCTACATACAGCACAAACGATCCCTGTACATACTATAAGATAA]


>consensus_8266#2 CCACGCGTCCGCGCAGCGTATCGCTATCTGGGGCTGGAGTTACGGAGGTTACGCATCGGC CATGGCACTAGCGCAGGATACGCAGCACGTGTTCCAGTGTGCCGTGTCGGTGGCGCCGGT AACGGATTGGCTGTTTTACGATTCGATCTACACCGAACGGTACATGGGCCTGCCGACGCT AACCGACAACCGGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCG CAATCGGACGTACCTGCTGGTGCACGGTACGTACGATGACAACGTCCACTACCAGCAGGC GATGCAGCTGGCCCGGGCGCTCGAAACGCACGACATCATGTTCAAGCAGGTGAGCTACCC GGACGAGGATCACAGTCTGGCCGGTGTGCGACCCCATCTTTACCATACGCTTGGTAAATT CTTCAGCGAGTGCTTAAAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGCATTCCAAA ACCCGCACCCGGTCGGTACTTTTCGCGCTCCTCGGGTTGCTTCTTTGCAGTGATTTTGGA GGGTGAGATGAGATTCGCCTACATACAGCACAAACGATCCCTGTACATACTATAAGATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8266#0      CCGCCCACGCGTCCGCCCACGCGTCCGCTGGACCGCCAATGGGAAAATCATATTCCGCGA 60
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CGACTTCGGCACGGTGATGGTGTACGATCCGGAGGACAACGACACAAAAACACTGCTCGG 120
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      AGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACCTGTCGCCCGACGGCAAGTA 180
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      TCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACAGCTACCTGGCGATCTACGA 240
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      TATTGTGGATATGGCGACGAAGCAAGTCATTCCGATTAATGTCGGTGGACAGAGGCGTGC 300
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CCTCAATCTCGTTGAATGGAGCCCCGTCGGCCACTCGTTCGTGTTCGTGTACCAGAACAA 360
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CCTCTACTACCGCGAAACGCCGACCTCGCCCGAGATCCAGATCACCACCGATGGTAGCCC 420
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      GAGCGTGTACAACGGCATCCCGGACTGGGTGTACGAGGAGGAAGTGTTCTCGACCAACAT 480
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      TGCCACCTGGTTCTCGCCGGACGGCAAGCGTATCGCGTTCATACGCTTCAACGACACGGA 540
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      AACGCCACTGATGAAGATCCCAATCTATGGGCCACCGGGCAACCCGGACTATCAGTATCC 600
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      ACGCGAGCTGACGCTGCACTACCCGAAGGTGGGCACCAAAAACCCGGAGGTGCATCTGTT 660
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CCAGTACGATCTGACCGGGCGGAAGTTGGCGGAGATTGAACCACCGGTTGAGCTGGTGAA 720
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      TCAGCAGCGCGATCACATCATTACGAGCGTTGGCTGGACGAAGGAACGGCTCGTGACGAT 780
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CTGGATGAATCGTGTGCAGAACCATGCCATTATCAAGTCATGCCTGCCCGAGTCTGGCCA 840
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      GTGTATGACGGTGCACGAGATTAAGGAAGAATCCGGATGGTTGGATCTATTTAGTGCGCC 900
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      GGTGTTTAATGGGGATGGAACACAGTTCCTGGTGATCTCCTCCCAGGCCCAGGGTACTGC 960
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CGGTGGATTTAAGCACGTGACGATGATCTCCACGACGGAACGGTCGGCCGTCCCGGTGAC 1020
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      TAGCGGTACGTTTGTCGTGCAGGAGATTCTGCGCTGGGATGCAGAGAGTAATTTGATCTT 1080
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      TTACACGGCCAACACGGGCAACGAATCGCACGTGCTGCATGTGTACGCGATCGAGGGCCG 1140
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      ACCGAATGCTCCCGCCGGGCAGTGCTTGACGTGCGACACAGAGGTGACCGCAAAGCAGAG 1200
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CTTCTTCAATGCGCAGATGAGCCCGAACGGTGGTAACTACTTGGTGCTGGAAGCACGCGG 1260
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CCCCAACATTCCCTGGACGCACGTGTATCGGTGGAGCGTTGCTGAGAAGGTTGTGCAGCT 1320
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      GAAGCTGATGAAGATCTGGGAATCGAACGATCATCTGGAGCGTGCACTCAAGGGCAAAGC 1380
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      AATCCCACGGGTCGAGATACACGAGCTGGATCTTGGCAATGGGTTTACCGCGAAGGCGAT 1440
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      GCTGCTCATTCCACCCGGCACCAACACCTCCAGCAGTGCGGTCAAGCATCCGATGCTGGT 1500
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      GGACGTGTACGGTGGGCCCAACTCGGCCAACGTCGTCGGCACCTGGTCGATTGGTTGGGG 1560
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      CACCCATCTCGCCTCGAACCGGTCCGTGGTGTACGCGAAAGATTGATGGCCGCGGCAGTG 1620
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      GACTGCGCGGCGATCGGCTCATGTACCAGATCTACCGTAAGCTCGGTACGGTCGAGGTAC 1680
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------CCGCCC 6
                                                                                  

consensus_8266#0      AGGATCAGATTACCGGCGCTCGCAAGCTAGCCGAACAGCTGCCGTTTGTCGATCCGCAGC 1740
consensus_8266#2      -----------------------------------------CCACGCGTCCG--CGCAGC 17
consensus_8266#1      GTGGTTTAGTGAGCAGACGCAGAGACGCGCGTCCACTTTTGGCGTGTGTCCA--CAGTGT 64
                                                                *    ***    *   * 

consensus_8266#0      GTATTGCTATCTGGGGCTGGAGTTACGGTGGTTACGCATCGGCCA-TGGCACTA-GCGCA 1798
consensus_8266#2      GTATCGCTATCTGGGGCTGGAGTTACGGAGGTTACGCATCGGCCA-TGGCACTA-GCGCA 75
consensus_8266#1      CCACCGGGTCTCGGGTCTCGGTTTTTAAGTGTTGCGTGAAGAGTAGTATCGTTGTGAGCT 124
                        *  *      *** ** *  **      *** **    *   * *  *  *  * ** 

consensus_8266#0      GGATACGCAGCA-CGTGTTC------CAGTGTGCCGTGTCGGTGGCGCCGGTAACGGATT 1851
consensus_8266#2      GGATACGCAGCA-CGTGTTC------CAGTGTGCCGTGTCGGTGGCGCCGGTAACGGATT 128
consensus_8266#1      GTTTACTAAAGATCGTGGACACTAAGCAGTGTGACTTGGGTGTGAGAACGAGACGAAGGA 184
                      *  ***  *  * ****  *      ******* * **   ***    **  *       

consensus_8266#0      GGCTGTTTTACGATT-CGATCTACACCG--AACGGTACATGGGCCTGCCGACGCTAACCG 1908
consensus_8266#2      GGCTGTTTTACGATT-CGATCTACACCG--AACGGTACATGGGCCTGCCGACGCTAACCG 185
consensus_8266#1      GAGCCCTTCAAAATGGCAGCATCCACTGGCAACAGCATCGAGATCGGAC-ATTCGGATCA 243
                      *     ** *  **  *    * *** *  *** * *    *  * * * *  *  * * 

consensus_8266#0      ACAACC----GGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGC 1964
consensus_8266#2      ACAACC----GGGCCGGGTATGAAACGTCACGACTGACGGCACTGCACGAGCGGTTCCGC 241
consensus_8266#1      GGAACTCGTTGGCTCTGGCAAGCGGAACCTTCGCCGATATCTTCTCCTCGGTACGTTGGC 303
                        ***     **  * ** * *      *    * **   *    *    *    *  **

consensus_8266#0      AATCGGACGTACCTGCTGGTGC-ACGGTACGTACGATGACAACGTCCACTACCAGCAGGC 2023
consensus_8266#2      AATCGGACGTACCTGCTGGTGC-ACGGTACGTACGATGACAACGTCCACTACCAGCAGGC 300
consensus_8266#1      CGTCATCCTTACC-GTCGTTGCCGTCGCACTCGTGGTCGTCCTCACCGCTAGCAATGAGG 362
                        **   * **** *  * ***    * **    * *        ** *** **    * 

consensus_8266#0      GATGCAGCTGGCCCGGGGCG-CTCGAAACGCACGACATCATGT-TCAAGCAGGTGAGCTA 2081
consensus_8266#2      GATGCAGCTGGCCCGGG-CG-CTCGAAACGCACGACATCATGT-TCAAGCAGGTGAGCTA 357
consensus_8266#1      AGGAAAGCGGTCCCGAGACGGCTCCCATCGTACGTGAAGGTGAACCGATCACGTTGGATG 422
                           *** * **** * ** ***  * ** ***  *   **   * * ** **  * * 

consensus_8266#0      CC--CGGACGAGGATCACAGTCTGGCTGGTGTGCGGCCC-CATCTTTACCATACGCTTGG 2138
consensus_8266#2      CC--CGGACGAGGATCACAGTCTGGCCGGTGTGCGACCC-CATCTTTACCATACGCTTGG 414
consensus_8266#1      ACTTCCTGCAGGGGCGACTGTCAGCGAGCGGCTTTACCGGCACCTGGACCGC-CAATGGG 481
                       *  *   *  **   ** *** *   *  *     **  ** **  ***   *  * **

consensus_8266#0      TAAAT--TCTTCAGCGAGTGCTTAAAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGC 2196
consensus_8266#2      TAAAT--TCTTCAGCGAGTGCTTAAAGCTAAACTAAAGCTCTGCTCTGTACTGTGTTCGC 472
consensus_8266#1      AAAATCATATTCCGCGACGACTTCGG--CACGGTGATGGTGTACGATCCGGAGGACAACG 539
                       ****  * *** ****   ***      *   * * * * * *  *     *       

consensus_8266#0      ATTCCAAAAC-CCGCACCCGGTCG-GTACTTTTCGCGCTCCTCGGTTTGCTTCTTTGCAG 2254
consensus_8266#2      ATTCCAAAAC-CCGCACCCGGTCG-GTACTTTTCGCGCTCCTCGGGTTGCTTCTTTGCAG 530
consensus_8266#1      ACACAAAAACACTGCTCGGAGTGGCGAACGAAGAGCAGCTGCAGGGTTTCAAGTTTGACC 599
                      *  * ***** * ** *   ** * * **     **       ** ** *   ****   

consensus_8266#0      TGATTTTGGAGGGTGCGA---TGAGATTCGCCTATATACAGCACAAACGATCCCTGTACA 2311
consensus_8266#2      TGATTTTGGAGGGTGAGA---TGAGATTCGCCTACATACAGCACAAACGATCCCTGTACA 587
consensus_8266#1      TGTCGCCCGACGGCAAGTATCTGCTGGTAGCGCGCGGCTACAGCAAGATCTTCCGGCACA 659
                      **      ** **   *    **    * **        *   ***    * ** * ***

consensus_8266#0      TACTATAAGATAAGACTAACTCGGAAGAAGCCAGGAGGGGTGTTTGTGAAGCAAGAGACA 2371
consensus_8266#2      TACTATAAGATAA----------------------------------------------- 600
consensus_8266#1      -GCTACCTGGCGA----------------------------------------------- 671
                        ***   *   *                                               

consensus_8266#0      AGGTCCTCCACAAAAGCGAAGTGGAGCATTTGGTGTCTATAATGTGGAGAGGAGAAAAGG 2431
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      AGACAAAGCAGGGACAACGGCATTTGTTGTGAGAACAGATTTTAAAACACTATATGTACA 2491
consensus_8266#2      ------------------------------------------------------------
consensus_8266#1      ------------------------------------------------------------
                                                                                  

consensus_8266#0      TAAGGAGAGAGCGAA 2506
consensus_8266#2      ---------------
consensus_8266#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)