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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1568 fasta sequence
[GTCAAAGCGCTATCGTTATGTTAGATCAATTATGAAATTTCAAGTTTAGTATTTACGGTGCACACTGTGTCCGATGAAAAAAGGCAAACATAGAGTATGCAAGGAAGGTACATGAAAAGTTGAATTATGTGAAATTTGCCAGAAGAGGTGGTTTTAATGTTTAAGAAGACGATGAGTAGATAGTGGGTAGGAGAGTAAAGATAATTCGTGCGGTGGGAAGGCTTTATGGATGGAGCGTTCATAGAGTACAAGCAAGGGTGCCAGCGAACGGACAGTGGTTGCCGTAGACCCTATCATCCCACTGCAAGAAGCTTTCTGTTAATAATGATTCAAAACCGTGTGATAGCGACGAGAGAAGGACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTTGGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAATAGTAATGCCATATACAGTGCATCATGCTTCCCGCCAAGGACATATGCTGAGATGATGGTTGGTTGTACGCGTCAAGAAAATAGGAAGCGAGCTAAGCACATGAGTTAGACGACGACCCCCCTGTGAATGGTTCAGTGAGTAACACATGCAAGCAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACACACATGTTGCCGTTGTTTCTCCAGCTCCGGATAAAGGTGTGACGGTCGGTGCTAACAAGAGGTGGACTTAGTTTTGGTTTACGTTTTTGACGATCACCAACCACACGACTGCCTTAGTTGGTGCAACTACAGAAGCAGGCTTTTTAGATAACGAGTATCGTAGGACGAATCTAAATATTGCTAACTGCTGCATGGTGAATGTTGCCGTGTGGTCATTCGTTCATCAGCTAAAACCCCCGACCACGTGTGCTGTGTTCGGTTGCGCGACATGCTGCTGCGCGCTTGCTGTAGTTTATATTGGCACCGTGTTTTTATGTACATTTTGTGGAGAAACAATAATGAGAACTTCATTACATAACAAGCAGCTATATCGTTAGAAGTACGAAATACGGGATGACCTACCATAAATAAACAAGATCTAGCGAAAAAGGTGTAACGAAACAAAGTGATAACGGAACTGGTGGCGTTGTTGAGGAATAGAGAATGTTTACAATGACGTGATTGAAAACGCCCATACATGGTCAAATAGAGTATAAATGTTACATAAGTGAATCAAAATATAGCGAAAAGGATTATTCAATTTATACATCACGCGTAGAAGACTATAAACCACCAGTCATTAAAAGAAACTTCCCATTGGTAGTATATTGCTTTATCAGGTGAAATGATTCTAATTCTCGGTCAAGCAAGAAATGGTGACTGGAAATGTGAAAAATATTTTAGTATCATACAAAACACAGAACAATATGTCATACAAAAAATAAAAAAAGTCATCACAAAAAAAAAAAAA]
[+] EMBL CNS09OR2 [GTCAAAGCGCTATCGTTATGTTAGATCAATTATGAAATTTCAAGTTTAGTATTTACGGTGCACACTGTGTCCGATGAAAAAAGGCAAACATAGAGTATGCAAGGAAGGTACATGAAAAGTTGAATTATGTGAAATTTGCCAGAAGAGGTGGTTTTAATGTTTAAGAAGACGATGAGTAGATAGTGGGTAGGAGAGTAAAGATAATTCGTGCGGTGGGAAGGCTTTATGGATGGAGCGTTCATAGAGTACAAGCAAGGGTGCCAGCGAACGGACAGTGGTTGCCGTAGACCCTATCATCCCACTGCAAGAAGCTTTCTGTTAATAATGATTCAAAACCGTGTGATAGCGACGAGAGAAGGACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTTGGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAATAGTAATGCCATATACAGTGCATCATGCTTCCCGCCAAGGACATATGCTGAGATGATGGTTGGTTGTACGCGTCAAGAAAATAGGAAGCGAGCTAAGCACATGAGTTAGACGACGACCCCCCTGTGAATGGTTCAGTGAGTAACACATGCAAGCAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACACACATGTTGCCGTTGTTTCTCCAGCTCCGGATAAAGGTGTGACGGTCGGTGCTAACAAGAGGTGGACTTAGTTTTGGTTTACGTTTTTGACGATCACC ACCACACGACTGCCTTAGTTGGTGC ACTACAGAAGCAGGCTTTTTAGATAACGAGTATCGTAGGACAAAaaaaaa ]
[+] EMBL BM650113 [ ccGGCTTTATGGATGGAGCGTTCATAGAGTACAAGCAAGGGTGCCAGCGAACGGACAGTGGTTGCCGTAGATCCTATCATCCCACTGCAAGAAGCTTTCTGTTAATAATGATTCAAAACCGTGTGATAGCGACGAGAGAAGGACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTTGGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAATAGTAATGCCATATACAGTGCATCATGCTTCCCGCCAAGGACATATGCTGAGATGATGGTTGGTTGTACGCGTCAAGAAAATAGGAAGCGAGCTAAGCACATGAGTTAGACGACGACCCCCCTGTGAATGGTTCAGTGAGTAACACATGCAAGCAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTG ]
[+] EMBL BM654859 [ ccgACCGTGTGATAGCGACGAGAGAAGGACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTTGGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAATAGTAATGCCATATACAGTGCATCATGCTTCCCGCCAAGGACATATGCTGAGATGATGGTTGGTTGTACGCGTCAAGAAAATAGGAAGCGAGCTAAGCACATGAGTTAGACGACGACCCCCCTGTGAATGGTTCAGTGAGTAACACATGCAAGCAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACACACATGTTGCCGTTGTTTCTCCAGCTCCGGATAAAGGTGTGACGGTCGGTGCTAACAAGAGGTGGACTTAGTTTTGGTTTACGTTTTTGACGATCACCAACCACACGACTGCCTTAGTTGGTGCAACTACAGAAGCAGGCTTTTTAGATAACGAGTATCGTAGGACGAATCTAAATATTGCTAACTGCTGCATGGTGAATGTTGCCGTGTGGTCATTCGTTCATCAGCTAAAACCCCCGACCA ]
[+] EMBL BX613340 [ GCGTTTTGGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAATAGTAATGCCATATACAGTGCATCATGCTTCCCGCCAAGGACATATGCTGAGATGATGGTTGGTTGTACGCGTCAAGAAAATAGGAAGCGAGCTAAGCACATGAGTTAGACGACGACCCCCCTGTGAATGGTTCAGTGAGTAACACATGCAAGCAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACACACATGTTGCCGTTGTTTCTCCAGCTCCGGATAGAGGTGTGACGGTCGGTGCTAACATGAGGTGGACTTAGTTTTGGTTTACGTTTTTGACGATCACCAACCACACGACTGCCTTAGTTGGTGCAACTACAGAAGCAGGCTTTTTAGATAACGAGTATCGTAGGACGAATCTAAATATTGCTAACTGCTGCATGGTGAATGTTGCCGTGTGGTCATTCGTTCATCAGCTAAAACCCCCGACCACGTGTGCTGTGTTCGGTTGCGCGACATGCTGCTGCGCGCTTGCTGTAGTTTATATTGGCACCGTGTTTTTATGTACATTTTGTGGAGAAACAATAATGAGAACTTCATTACATAACAAGCAGCTATATCGTTAGAAGTACGAAATACGGGATGACCTACCATAAATAAACAAGA ]
[+] EMBL BX624739 [ TTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAATAGTAATGCCATATACAGTGCATCATGCTTCCCGCCAAGGACATATGCTGAGATGATGGTTGGTTGTACGCGTCAAGAAAATAGGAAGCGAGCTAAGCACATGAGTTAGACGACGACCCCCCTGTGAATGGTTCAGTGAGTAACACATGCAAGCAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACACACATGTTGCCGTTGTTTCTCCAGCTCCGGATAAAGGTGTGACGGTCGGTGCTAACAAGAGGTGGACTTAGTTTTGGTTTACGTTTTTGACGATCACCAACCACACGACTGCCTTAGTTGGTGCAACTACAGAAGCAGGCTTTTTAGATAACGAGTATCGTANGACGAATCTAAATATTGCTAACTGCTGCATGGTGAATGTTGCCGTGTGGTCATTCGTTCATCAGCTAAAACCCCCGACCACGTGTGCTGTGTTCGGNTGCGCGACATGCTGCTGCGCGCTTGCTGTANTTTATATTGGCACCGTGTTTTTATGTACATTTTGTGGA NAACCATAATGAGAACTTCATTACTTA ]
[+] EMBL BX624713 [ TGCAAGTAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACACACATGTTGCCGTTGTTTCTCCAGCTCCGGATAga ]
[-] EMBL CNS09OR3 [ CACATACTAGACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACACACATGTTGCCGTTGTTTCTCCAGCTCCGGATAAAGGTGTGACGGTCGGTGCTAACAAGAGGTGGACTTAGTTTTGGTTTACGTTTTTGACGATCACCAACCACACGACTGCCTTAGTTGGTGCAACTACAGAAGCAGGCTTTTTAGATAACGAGTATCGTAGGACGAATCTAAATATTGCTAACTGCTGCATGGTGAATGTTGCCGTGTGGTCATTCGTTCATCAGCTAAAACCCCCGACCACGTGTGCTGTGTTCGGTTGCGCGACATGCT CTGCGCGCTTGCTGTAGTTTATATTGGCACCGTGTTTTTATGTACATTTTGTGGAGAAACAATAATGAGAACTTCATTACATAACAAGCAGCTATATCGTTAGAAGTACGAAATACGGGATGACCTACCATAAATAAACAAGATCTAGCGAAAAAGGTGTAACGAAACAAAGTGATAACGGAACTGGTGGCGTTGTTGAGGAATAGAGAATGTTTACAATGACGTGATTGAAAACGCCCATACATGGTCAAATAGAGTATAAATGTTACATAAGTGAATCAAAATATAGCGAAAAGGATTATTCAATTTATACATCACGCGTAGAAGACTATAAACCACCAGTCATTAAAAGAAACTTCCCATTGGTAGTATATTGCTTTATCAGGTGAAATGATTCTAATTCTCGGTCAAGCAAGAAATGGTGACTGGAAATGTGAAAAATATTTTAGTATCATACAAAACACAGAACAATATGTCATACAAAAAATAAAAAAAGTCATCACAAAAAAAAAAAAA]
[+] EMBL BM632303 [ ccGGTGAATGTTGCCGTGTGGTCATTCGTTCATCAGCTAAAACCCCCGACCACGTATGCTGTGTTCGGTTGCGCGACATGCTGCTGCGCGCTTGCTGTAGTTTATATTGGCACCGTGTTTTTATGTACATTTTGTGGAGAAACAATAATGAGAACTTCATTACATAACAAGCAGCTATATTGTTAGAAGTACGAGATACGGGATGACCTACCATAAATAAACAAGATCTAGCGAAAAAGGTGTAACGAAACAAAGTGATAACGGAACTGGTGGCGTTGTTGAGGAATAGAGAATGTTTACAATGACGTGATTGAAAACGCCCATACATGGTCAAATAGAGTATAAATGTTACATAAGTGAATCAAAATATAGCGAAAAGGATTATTCAATTTATACATCACGCGTAGAAGACTATAAACCACCAGTCATTAAAAGAAACTTCCCATTGGTAGTATATTGCTTTATCAGGTGAAATGATTCTAATTCTCGGTCAAGCAAGAAAAGGTGACTGGAAATGTGAAAAATATTTTAGTATCATACAAAACACAG ]
consensusID : consensus_8272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[TGTCCGATGAAAAAGGCAACATAGAGTATGCAAGGAAGGTACATGAAAAGTTGAATTATGTGAAATTTGCCAGAAGAGGTGGTTTTAATGTTTAAGCAAGACGATGAGTAGATAGTGGGTAGGAGAGTAAAGATAATTCGTGCGGTGGGAAGGCTTTATGGATGGAGCGTTCATAGAGTACAAGCAAGGGTGCCAGCGAACGGACAGTGGTTGCCGTAGATCCTATCATCCCACTGCAAGAAGCTTTCTGTTAATAATGATCCAAAACCGTGTGATAGCGGACGAGAGAAGGACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTTGGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGT]
[+] EMBL CNS098PF [TGTCCGATGAAAAAGGCAACATAGAGTATGCAAGGAAGGTACATGAAAAGTTGAATTATGTGAAATTTGCCAGAAGAGGTGGTTTTAATGTTTAAGCAAGACGATGAGTAGATAGTGGGTAGGAGAGTAAAGATAATTCGTGCGGTGGGAAGGCTTTATGGATGGAGCGTTCATAGAGTACAAGCAAGGGTGCCAGCGAACGGACAGTGGTTGCCGTAGATCCTATCATCCCACTGCAAGAAGCTTTCTGTTAATAATGATCCAAAACCGTGTGATAGCGGACGAGAGAAGGACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTTGGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAATAGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8272#0 GTCAAAGCGCTATCGTTATGTTAGATCAATTATGAAATTTCAAGTTTAGTATTTACGGTG 60
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 CACACTGTGTCCGATGAAAAAAGGCAAACATAGAGTATGCAAGGAAGGTACATGAAAAGT 120
consensus_8272#1 -------TGTCCGATGAAAAAGG--CAACATAGAGTATGCAAGGAAGGTACATGAAAAGT 51
************** * **********************************
consensus_8272#0 TGAATTATGTGAAATTTGCCAGAAGAGGTGGTTTTAATGTTTAAG-AAGACGATGAGTAG 179
consensus_8272#1 TGAATTATGTGAAATTTGCCAGAAGAGGTGGTTTTAATGTTTAAGCAAGACGATGAGTAG 111
********************************************* **************
consensus_8272#0 ATAGTGGGTAGGAGAGTAAAGATAATTCGTGCGGTGGGAAGGCTTTATGGATGGAGCGTT 239
consensus_8272#1 ATAGTGGGTAGGAGAGTAAAGATAATTCGTGCGGTGGGAAGGCTTTATGGATGGAGCGTT 171
************************************************************
consensus_8272#0 CATAGAGTACAAGCAAGGGTGCCAGCGAACGGACAGTGGTTGCCGTAGACCCTATCATCC 299
consensus_8272#1 CATAGAGTACAAGCAAGGGTGCCAGCGAACGGACAGTGGTTGCCGTAGATCCTATCATCC 231
************************************************* **********
consensus_8272#0 CACTGCAAGAAGCTTTCTGTTAATAATGATTCAAAACCGTGTGATAGCG-ACGAGAGAAG 358
consensus_8272#1 CACTGCAAGAAGCTTTCTGTTAATAATGATCCAAAACCGTGTGATAGCGGACGAGAGAAG 291
****************************** ****************** **********
consensus_8272#0 GACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTT 418
consensus_8272#1 GACGGCCAGAGAGGTATTGAAGTGCAAAATCGTAAAAACGGTTCGTGAGAGATGCGTTTT 351
************************************************************
consensus_8272#0 GGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAAT 478
consensus_8272#1 GGCGAGAGAGCAAACATATTATCTTTGGTTCTGCTTTTTTGTCTGCTTTTAGTTCATAAT 411
************************************************************
consensus_8272#0 AGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAATAGTAATGCCAT 538
consensus_8272#1 AGATCTCGTGTTTTAAGCAAATTCCTCAATAAACGAAACCTCACATAAAAAAAAAAAAAA 471
************************************************ * ** *
consensus_8272#0 ATACAGTGCATCATGCTTCCCGCCAAGGACATATGCTGAGATGATGGTTGGTTGTACGCG 598
consensus_8272#1 AAAAAAAAAAA-------------AAAAAAAAAAAAAAAAAAAAAGGCCAAATGT----- 513
* * * * ** * * * * * * ** ***
consensus_8272#0 TCAAGAAAATAGGAAGCGAGCTAAGCACATGAGTTAGACGACGACCCCCCTGTGAATGGT 658
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 TCAGTGAGTAACACATGCAAGCAGTGGGCTAGCCCGGCCCCTTACCCGTATCACATACTA 718
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 GACTAGCATAAAAGAGATATTAGAGAGTTTCAGTACTGCCAGGAGTGTTTGAACCCGACA 778
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 CACATGTTGCCGTTGTTTCTCCAGCTCCGGATAAAGGTGTGACGGTCGGTGCTAACAAGA 838
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 GGTGGACTTAGTTTTGGTTTACGTTTTTGACGATCACCAACCACACGACTGCCTTAGTTG 898
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 GTGCAACTACAGAAGCAGGCTTTTTAGATAACGAGTATCGTAGGACGAATCTAAATATTG 958
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 CTAACTGCTGCATGGTGAATGTTGCCGTGTGGTCATTCGTTCATCAGCTAAAACCCCCGA 1018
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 CCACGTGTGCTGTGTTCGGTTGCGCGACATGCTGCTGCGCGCTTGCTGTAGTTTATATTG 1078
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 GCACCGTGTTTTTATGTACATTTTGTGGAGAAACAATAATGAGAACTTCATTACATAACA 1138
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 AGCAGCTATATCGTTAGAAGTACGAAATACGGGATGACCTACCATAAATAAACAAGATCT 1198
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 AGCGAAAAAGGTGTAACGAAACAAAGTGATAACGGAACTGGTGGCGTTGTTGAGGAATAG 1258
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 AGAATGTTTACAATGACGTGATTGAAAACGCCCATACATGGTCAAATAGAGTATAAATGT 1318
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 TACATAAGTGAATCAAAATATAGCGAAAAGGATTATTCAATTTATACATCACGCGTAGAA 1378
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 GACTATAAACCACCAGTCATTAAAAGAAACTTCCCATTGGTAGTATATTGCTTTATCAGG 1438
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 TGAAATGATTCTAATTCTCGGTCAAGCAAGAAATGGTGACTGGAAATGTGAAAAATATTT 1498
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 TAGTATCATACAAAACACAGAACAATATGTCATACAAAAAATAAAAAAAGTCATCACAAA 1558
consensus_8272#1 ------------------------------------------------------------
consensus_8272#0 AAAAAAAAAA 1568
consensus_8272#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||