These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 966 fasta sequence [CCTGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG-CCT-TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA-TTTTCTTCCTTACGGGCGGCCTTGGC-GGCAACGTACAGTTCC-TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG-ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCAT-CACTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTCCCCGCAG] [-] EMBL CNS09LMQ [CCTGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCCTTTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAG TGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGACTTCTTCGTGCGTACCAT CACTTTCGC ] [-] EMBL CNS095XR [ AGCTCGGGCACATGTGGCC TTTTTTTTTTTTTTTAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTTGGCTTGCGCTTGCCAAGCTTCAGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACA CTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGCCCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTC TCGTGCGTACCAT CACT ] [+] EMBL CNS094YG [ TTTTTTTTAGTTTCTTCGCGTTCACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAG ATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCGTATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGCAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTGGACCAAGCAAGTTTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTTCCAT CACTTTCGCAAACACCAACAAAAAAAGCCAGTGGGCCAACAGTGCTCGAGGAATTCCGCAGCTCCCCGC ] [+] EMBL CNS09EMC [ TAGTTTCTTCGCGTACACATATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGAAAGGATCTGCTTGG ] [+] EMBL CNS09LMR [ TCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTTGACCAAGCAAGTTTCCACGTCCGTCAATTAAAATTGACTTCTTCGTGCGTACCAT CACTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTttttagag] [+] EMBL CNS095XS [ GCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTCTGATGGTGGCAATCTTGTGCAACGCAGCCCTCTGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCC TTGCGCTTGCGCTTGCCAAGCTTCAGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGAAAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGCCCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTTGACCAAGCAAGTTTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCAT CACTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCT ] [-] EMBL CNS09EMB [ CAATCTTGTGCAACGCAG CCT TGGTGATAGCATCTTTAAGAACCATTGATGTTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGCAAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGTGGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTA TTTTCTTCCTTACGGGCGGCCTTGGC GGCAACGTACAGTTCCTTTGCG TTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAG TGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCAT CACTTTCGCAAACACCAACAAAAAA ] [-] EMBL CNS094YF [ TGCGTATTTTTCTTCCTTACGGGCGGCCTTGGCGGGCAACGTACAGTTCCTTTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACGGCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGCTTCAATACAGCATTCTGCG ATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTGATTTTCTTCAGCTTCTTCTTGTGCATGCAAGCAATGCGAGCCTTGATCTTGCGCTTGGCTTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGACCGTACAGTACTTTCGGTCTGGGCGCAGGCACAG TGACGCAGGGCGATCGGAACGCACACTCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGCATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGTCGACCAAGCAAGTGTCCACGTCCGTCAATTAAAATTGGCTTCTTCGTGCGTACCATGCACTTTCGCAAACACCAAAAAAAAA ] consensusID : consensus_8275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [TGCTGTTTAATGTCTACACTTCACACCTTTATTTGGATTATTTCATTAATATATCGCGGGTTCAAGGGCTTAATACCGGTAAACAAGGATGTTCGGTTGTGTAATGTGGATATTCGAAAACGGAAAACCATTCCGTATTGTACTCGGGAATTGGTGGAAAGTGAATGTTTCTAATGATTTCCCATCATGGAAAGCTGTACTTAACCTATAAAAAAACGAGTAGATTATTGATTATAAAAGAAAGATAAAAAAAAGAAAAAAAAATACCATTATTAGCATCTATCACGTGTCGTACGTGTGATGATACAACCGTAATAGCGCTCGACAGTATAAAAAATAATATGTGTGTGTGTGTGTGTGGATGTGTTT] [+] EMBL BM642155 [TGCTGTTTAATGTCTACACTTCACACCTTTATTTGGATTATTTCATTAATATATCGCGGGTTCAAGGGCTTAATACCGGTAAACAAGGATGTTCGGTTGTGTAATGTGGATATTCGAAAACGGAAAACCATTCCGTATTGTACTCGGGAATTGGTGGAAAGTGAATGTTTCTAATGATTTCCCATCATGGAAAGCTGTACTTAACCTATAAAAAAACGAGTAGATTATTGATTATAAAAGAAAGATAAAAAAAAGAAAAAAAAATACCATTATTAGCATCTATCACGTGTCGTACGTGTGATGATACAACCGTAATAGCGCTCGACAGTATAAAAAATAATATGTGTGTGTGTGTGTGTGGATGTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8275#0 CCTGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAGTTTCTTCGCGTACACAT 60 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 ATCGCGTATGTTTGTATATTTTCTTCCTTCACATTAAACTGCATTGGTTTACAACGATTC 120 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 TGATGGTGGCAATCTTGTGCAACGCAGCCTTGGTGATAGCATCTTTAAGAACCATTGATG 180 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 TTGAAATTGAAGCTCTTCATCAAACACCATCACCACACCAAATTTGTTCCCCGTCAAGGC 240 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 AAAACTTCTTCCGATTTAATAAGATTAAGCCTTTGCCTTCGCCTTTGCCGGAGCCTTGGT 300 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 GGCCGTGGTTGCCTTTTTCGCCTTGGCTGCAGCCCTGGCTGCGTATTTTCTTCCTTACGG 360 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 GCGGCCTTGGCGGCAACGTACAGTTCCTTGCGCTTGCGCTTGCCAAGCTTCGGCGGAACG 420 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 GCGTTCACCACTGGTTTGCTGTACTTCTTCTCGAATTCCGATGTGAGATAACCATACTGC 480 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 TTCAATACAGCATTCTGCGATTCAATCCTCTTGGCCACAACGGCACGAGCACTCCATGTG 540 consensus_8275#1 ------------------------------------------------------------ consensus_8275#0 ATTTTCTTCAGCTTCTTCTTGTGCATGTAAGCAATGCGAGCCTTGATCT-TGCGCTTGGC 599 consensus_8275#1 ------------------------------------TGCTGTTTAATGTCTACACTTCAC 24 * ** ** * * * *** * consensus_8275#0 TTCCAGGTTGTTCACGACGTCTCGGTACTTCCAGCCGACTTCATGAGCAACGCGATCGAC 659 consensus_8275#1 ACCT---TTATTTGGATTATTTCATTAATATATCGCGGGTTCAAGGGCT-TAATACCGGT 80 * ** ** * ** ** * ** **** * ** * ** consensus_8275#0 CGTACAGTACTTTCGGTCTGGGCGCAGGCACAGCTGACGCAGGGCGATCGGAACGCACAC 719 consensus_8275#1 AAACAAGGATGTTCGGTTGTGTAATGTGGATATTCGAAAACGGAAAACCATTCCGTATTG 140 ** * ****** * * * * ** ** * * ** * consensus_8275#0 TCGCTTCATCTTGTCATATGGCGGAGGAATGCCCTCATACACCTTCAAGCGACGGAGCGC 779 consensus_8275#1 TACTCGGGAATTG----GTGGAAAGTGAATGTTTCTAATGATTTCCCATC-ATGGAAAGC 195 * *** *** ***** * * * * * * * *** ** consensus_8275#0 ATTCGCACCACGACCACCGAGTTACCAGACAGGATCTGCTTGGCGACGACCGAGGCCAGT 839 consensus_8275#1 ---TGTACTTAACCTATAAAAAAACGAGTAGATTATTGATTATAAAAGAAAGATAAAAAA 252 * ** * * * ** ** ** ** * ** ** * consensus_8275#0 CGACCAAGCAAGTGTCCACGTC--CGTCAATTAAAATTGGCTTCTTCGTGCGTACCATCA 897 consensus_8275#1 AAGAAAAAAAAATACCATTATTAGCATCTATCACGTGTCGTACGTGTGATGATACAACCG 312 ** ** * * * * ** ** * * * * * *** * * consensus_8275#0 CTTTCGCAAACACCAACAAAAAAAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGC 957 consensus_8275#1 TAATAGCGCTCGACAGTATAAAAAATAATATGTGTGTGTGTGTGTGTGGATGTGTTT--- 369 * ** * ** * ***** * ** ** * *** * consensus_8275#0 TCCCCGCAG 966 consensus_8275#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||