Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8290 cluster # 8290       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8290#0 length = 1289 sequences # 5  
consensus_8290#1 length = 698 sequences # 1  
consensus_8290#2 length = 692 sequences # 1  
consensus_8290#3 length = 632 sequences # 1  
consensus_8290#4 length = 503 sequences # 1  

consensusID : consensus_8290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1289
fasta sequence
                              [TTGCTCCAAATCTACCACATAGGGCATGAACTGGAAAGGTGTGCTCTATCGAGAGGAAATTTATTCTTGCACGCTCTATTAATAGAAGAACGCCATGCGACTCATAGATTAGTTAAATTGCATGGAGCTGGGATGTGCGTAACAGCAATACGATTGTACTGTATAAGGAGAAAGCAGTTTCTTGTAGCGGTCACATTTTCTATGATTTGAGTAATTGTGGTCATCAATCATCTAAATGTTTTTCGAAGAGTGCTTCATCGCATATCTTACATTACTATTATCTACAGAACAAAGACACATCCGCGACTGCAACGAATGCAGATAGTCTTCTGCTATAGATAATAGCCCTGCAAGATATTGCAACGGACGTATACCTCAACACAAGCAACCTTCTCGCATCCCTCACCGTATGGATGTACACGCCCGCCTCGGCATCCAAGGGTTGACGACCATTTGTGCTTGATTTGTCACACTAATAGGAATAGCACAACATATTTCTTCTGCCACGCATTGGCGCTTT-GATACTATGCTTTTGGTTACTTTCTTCTGCCACGCATTGGCGCTTTGTAACTGAATTTTTGATTTTCAGCCTCGCATAGGCACAATAACGTATCATTTACAACAGAGCAGACCCTAGCCAGTGGAAAGAATATCGCACATGCTGCCAACAATTGTACAATTCAAACTATCTCGAATTACGGTACTTCAACATCCATTATTAACGGGGGTCTTATCAAAAAAAAATCCCTGATTACACCCATCGTTAAGAATCGATAGTTGGACTCAATAGTGAATCAAAACGATCGATCAACACTGCTTGCTCTGTTTTCGTGCGAAGTTGCCTTTGCTTGCCGGTGGCAAGCGTCATTAACTTAATTGTCACACCTTGGTATGGTCTTCAAAACGGCGGGTCGACTGACCAGCTGCCAGATCCCACAGTCGAAGAGTTTTGTCCCACGATCCGGACAGAGCGTAGTTGCCGTCGGAGGACAGCACTACATCGGAAATGAAGTGCGAGTGTCCGTACAGACGCTTCTGAGGAATGCCGTAGCTCAGCTCATCACGGGTCAATTTCCATACGATCAGCGTCTTGTCACGAGACGAAGACAGGATCATGTCCGGGTACTTCGGATTGGTGGCGATCTGCGTCACCCATCCAGAGTGGCCAAGCAGCTGGCCGCGCAGTTGCAGTGTTTCAGTCATTTTCGGTTCTATTCACAAATTTCACACTTTGCCAAGCGATTCGTTTTCGCGAGCAGCGAAATTCACGTCCGCGGACGCGTGGGCGG]

[+] EMBL CNS09AAT             [TTGCTCCAAATCTACCACATAGGGCATGAACTGGAAAGGTGTGCTCTATCGAGAGGAAATTTATTCTTGCACGCTCTATTAATAGAAGAACGCCATGCGACTCATAGATTAGTTAAATTGCATGGAGCTGGGATGTGCGTAACAGCAATACGATTGTACTGTATAAGGAGAAAGCAGTTTCTTGTAGCGGTCACATTTTCTATGATTTGAGTAATTGTGGTCATCAATCATCTAAATGTTTTTCGAAGAGTGCTTCATCGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CNS09BTP             [      CAAATCTACCACATAGGGCATGAACTGGAAAGGTGTGCTCTATCGAGAGGAAATTTATTCTTGCACGCTCTATTAATAGAAGAACGCCATGCGACTCATAGATTAGTTAAATTGCATGGAGCTGGGATGTGCGTAACAGCAATACGATTGTACTGTATAAGGAGAAAGCAGTTTCTTGTAGCGGTCACATTTTCTATGATTTGAGTAATTGTGGTCATCAATCATCTAAATGTTTTTCGAAGAGTGCTTCATCGCATATCTTACATTACTATTATCTACAGAACAAAGACACATCCGCGACTGCAACGAATGCAGATAGTCTTCTGCTATAGATAATAGCCCTGCAAGATATTGCAACGGACGTATACCTCAACACAAGCAACCTTCTCGCATCCCTCACCGTATGGATGTACACGCCCGCCTCGGCATCCAAGGGTTGACGACCATTTGTGCTTGATTTGTCACACTAATAGGAATAGCACAACATATTTCTTCTGCCACGCATTGGCGCTTT GATACTATGCTTTTGGTTACTTTCTTCTGCCACGCATTGGCGCTTTGTAACTGAATTTTTGATTTTCAGCCTCGCATAGGCACAATAACGTATCATTTACAACAGAGCAGACCCTAGCCAGTGGAAAGAATATCGCACATGCTGCCAACAATTGTACAATTCAAACTATCTCGAATTACGGTACTTCAACATCCATTATTAACGGGGGTCTTATCAAAAAAAAATCCCTGATTACACCCATCGTTAAGAATCGATAGTTGGACTCAATAGTGAATCAAAACGATCGATCAACACTGCTTGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CNS09GZ6             [                                                               TTCTTGCACGCTCTATTAATAGAAGAACGCCATGCGACTCATAGATTAGTTAAATTGCATGGAGCTGGGATGTGCGTAACAGCAATACGATTGTACTGTATAAGGAGAAAGCAGTTTCTTGTAGCGGTCACATTTTCTATGATTTGAGTAATTGTGGTCATCAATCATCTAAATGTTTTTCGAAGAGTGCTTCATCGCATATCTTACATTACTATTATCTACAGAACAAAGACACATCCGCGACTGCAACGAATGCAGATAGTCTTCTGCTATAGATAATAGCCCTGCAAGATATTGCAACGGACGTATACCTCAACACAAGCAACCTTCTCGCATCCCTCACCGTATGGATGTACACGCCCGCCTCGGCATCCAAGGGTTGACGACCATTTGTGCTTTATTTGTCACACTAATAGGAATAGCACAACATATTTCTTCTGCCACGCATTGGCGCTTTGGATACTATGCTTTTGGTTACTTTCTTCTGCCACGCATTGGCGCTTTGTAACTGAATTTTTGATTTTCAGCCTCGCATAGGCACAATAACGTATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CNS094XN             [                                                                                 ATAGAAGAACGCCATGCGACTCATAGATTAGTTAAATTGTTCGGAGCTGGGATGTGCGTAACAGCAATACGATTGTACTGTATAAGGAGAAAGCAGTTTCTTGTAGCGGTCACATTTTCTATGATTTGAGTAATTGTGGTCATCAATCATCTAAATGTTTTTCGAAGAGTGCTTCATCGCATATCTTACATTACTATTATCTACAGAACAAAGACACATCCGCGACTGCAACGAATGCAGATAGTCTTCTGCTATAGATAATAGCCCTGCAAGATATTGCAACGGACGTATACCTCAACACAAGCAACCTTCTCGCATCCCTCACCGTATGGATGTACACGCCCGCCTCGGCATCCAAGGGTTGACGACCATTTGTGCTTGATTTGTCACACTAATAGGAATAGCACAACATATTTCTTCTGCCACGCATTGGCGCTTT GATACTATGCTTTTGGTTACTTTCTTCTGCCACGCATTGGCGCTTTGTAACTGAATTTTTGATTTTCAGCCTCGCATAGGCACAATAACGTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BM650576             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCCAACAATTGTACAATTCAAACTATCTCGAATTACGGTACTTCAACATCCATTATTAACGGAGGTCTTATCAAGAAAGAATCCCTGATTACACCCATCGTTAAGAATCGATAGATGGACTCAATAGTGAATCAAAACGATCGATCAACACTGCTTGCTCTGTTTTCGTGCGAAGTTGCCTTTGCTTGCCGGTGGCAAGCGTCATTAACTTAATTGTCACACCTTGGTATGGTCTTCAAAACGGCGGGTCGACTGACCAGCTGCCAGATCCCACAGTCGAAGAGTTTTGTCCCACGATCCGGACAGAGCGTAGTTGCCGTCGGAGGACAGCACTACATCGGAAATGAAGTGCGAGTGTCCGTACAGACGCTTCTGAGGAATGCCGTAGCTCAGCTCATCACGGGTCAATTTCCATACGATCAGCGTCTTGTCACGAGACGAAGACAGGATCATGTCCGGGTACTTCGGATTGGTGGCGATCTGCGTCACCCATCCAGAGTGGCCAAGCAGCTGGCCGCGCAGTTGCAGTGTTTCAGTCATTTTCGGTTCTATTCACAAATTTCACACTTTGCCAAGCGATTCGTTTTCGCGAGCAGCGAAATTCACGTCCGCGGACGCGTGGGCGG]


>consensus_8290#0 TTGCTCCAAATCTACCACATAGGGCATGAACTGGAAAGGTGTGCTCTATCGAGAGGAAAT TTATTCTTGCACGCTCTATTAATAGAAGAACGCCATGCGACTCATAGATTAGTTAAATTG CATGGAGCTGGGATGTGCGTAACAGCAATACGATTGTACTGTATAAGGAGAAAGCAGTTT CTTGTAGCGGTCACATTTTCTATGATTTGAGTAATTGTGGTCATCAATCATCTAAATGTT TTTCGAAGAGTGCTTCATCGCATATCTTACATTACTATTATCTACAGAACAAAGACACAT CCGCGACTGCAACGAATGCAGATAGTCTTCTGCTATAGATAATAGCCCTGCAAGATATTG CAACGGACGTATACCTCAACACAAGCAACCTTCTCGCATCCCTCACCGTATGGATGTACA CGCCCGCCTCGGCATCCAAGGGTTGACGACCATTTGTGCTTGATTTGTCACACTAATAGG AATAGCACAACATATTTCTTCTGCCACGCATTGGCGCTTTGATACTATGCTTTTGGTTAC TTTCTTCTGCCACGCATTGGCGCTTTGTAACTGAATTTTTGATTTTCAGCCTCGCATAGG CACAATAACGTATCATTTACAACAGAGCAGACCCTAGCCAGTGGAAAGAATATCGCACAT GCTGCCAACAATTGTACAATTCAAACTATCTCGAATTACGGTACTTCAACATCCATTATT AACGGGGGTCTTATCAAAAAAAAATCCCTGATTACACCCATCGTTAAGAATCGATAGTTG GACTCAATAGTGAATCAAAACGATCGATCAACACTGCTTGCTCTGTTTTCGTGCGAAGTT GCCTTTGCTTGCCGGTGGCAAGCGTCATTAACTTAATTGTCACACCTTGGTATGGTCTTC AAAACGGCGGGTCGACTGACCAGCTGCCAGATCCCACAGTCGAAGAGTTTTGTCCCACGA TCCGGACAGAGCGTAGTTGCCGTCGGAGGACAGCACTACATCGGAAATGAAGTGCGAGTG TCCGTACAGACGCTTCTGAGGAATGCCGTAGCTCAGCTCATCACGGGTCAATTTCCATAC GATCAGCGTCTTGTCACGAGACGAAGACAGGATCATGTCCGGGTACTTCGGATTGGTGGC GATCTGCGTCACCCATCCAGAGTGGCCAAGCAGCTGGCCGCGCAGTTGCAGTGTTTCAGT CATTTTCGGTTCTATTCACAAATTTCACACTTTGCCAAGCGATTCGTTTTCGCGAGCAGC GAAATTCACGTCCGCGGACGCGTGGGCGG



consensusID : consensus_8290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence
                              [CCGCCCACGCGTCCGCGAACAGCACGCCAAGTGTGCGACGCGAGTGAGGACGGTTGCGCGATAGCAGAGTTATGGTGGTGGAGTGTGCGCGCATCAAACAGACCCGCAACGCGGTACTAACTAGGCAGGACCGGCGACCGTTGCGAGCACAGTCTACGATCGGACAGGGACCCAAACGGAGGTAGGCCATCGCAGAGTGGACAACTCCTTTCCAGCTCGAAGTGCTACCCCCGCCACCGCGATACTAGAAGCTACAAATCGTGCCAGTGTAAAAACCTTCCATTCCAGCAGTACTAAAAGTTAGTAAAGTCTGAAGTGTCTAAGTACACCAAGTAAAGTGAGCCACGAAACAAAAAAACACTTAAAAGATAGCTGTGTAGAGTGTAGTTATACCCAAATCGCCTTGGCTGTGCGTGTTTAGTGACCAGTTTCGACCAGTGAATGCAGCAAACCCTTCTGAAGTGACCCACAGAGCGAGATAATGGGCAACGGGACGAAAGCCACCCAGCAACGGCAGCCGGAAGAGGATCGGGCCGATCTAGCGTCCACTGTGGAGGAGGAGGAACGCGAGCAGCTGACCGCCCCGTCCAATCTGCACTACATTCAGCCGAGCTTCATTTTCGCTCATAAGTGAAAAGCAATGGAAACCGGACGTGGAAAGGCAGCAGGATGTGCCGGTGTATGGAAGGACCACGATG]

[+] EMBL BM629830             [CCGCCCACGCGTCCGCGAACAGCACGCCAAGTGTGCGACGCGAGTGAGGACGGTTGCGCGATAGCAGAGTTATGGTGGTGGAGTGTGCGCGCATCAAACAGACCCGCAACGCGGTACTAACTAGGCAGGACCGGCGACCGTTGCGAGCACAGTCTACGATCGGACAGGGACCCAAACGGAGGTAGGCCATCGCAGAGTGGACAACTCCTTTCCAGCTCGAAGTGCTACCCCCGCCACCGCGATACTAGAAGCTACAAATCGTGCCAGTGTAAAAACCTTCCATTCCAGCAGTACTAAAAGTTAGTAAAGTCTGAAGTGTCTAAGTACACCAAGTAAAGTGAGCCACGAAACAAAAAAACACTTAAAAGATAGCTGTGTAGAGTGTAGTTATACCCAAATCGCCTTGGCTGTGCGTGTTTAGTGACCAGTTTCGACCAGTGAATGCAGCAAACCCTTCTGAAGTGACCCACAGAGCGAGATAATGGGCAACGGGACGAAAGCCACCCAGCAACGGCAGCCGGAAGAGGATCGGGCCGATCTAGCGTCCACTGTGGAGGAGGAGGAACGCGAGCAGCTGACCGCCCCGTCCAATCTGCACTACATTCAGCCGAGCTTCATTTTCGCTCATAAGTGAAAAGCAATGGAAACCGGACGTGGAAAGGCAGCAGGATGTGCCGGTGTATGGAAGGACCACGATG]


>consensus_8290#1 CCGCCCACGCGTCCGCGAACAGCACGCCAAGTGTGCGACGCGAGTGAGGACGGTTGCGCG ATAGCAGAGTTATGGTGGTGGAGTGTGCGCGCATCAAACAGACCCGCAACGCGGTACTAA CTAGGCAGGACCGGCGACCGTTGCGAGCACAGTCTACGATCGGACAGGGACCCAAACGGA GGTAGGCCATCGCAGAGTGGACAACTCCTTTCCAGCTCGAAGTGCTACCCCCGCCACCGC GATACTAGAAGCTACAAATCGTGCCAGTGTAAAAACCTTCCATTCCAGCAGTACTAAAAG TTAGTAAAGTCTGAAGTGTCTAAGTACACCAAGTAAAGTGAGCCACGAAACAAAAAAACA CTTAAAAGATAGCTGTGTAGAGTGTAGTTATACCCAAATCGCCTTGGCTGTGCGTGTTTA GTGACCAGTTTCGACCAGTGAATGCAGCAAACCCTTCTGAAGTGACCCACAGAGCGAGAT AATGGGCAACGGGACGAAAGCCACCCAGCAACGGCAGCCGGAAGAGGATCGGGCCGATCT AGCGTCCACTGTGGAGGAGGAGGAACGCGAGCAGCTGACCGCCCCGTCCAATCTGCACTA CATTCAGCCGAGCTTCATTTTCGCTCATAAGTGAAAAGCAATGGAAACCGGACGTGGAAA GGCAGCAGGATGTGCCGGTGTATGGAAGGACCACGATG



consensusID : consensus_8290#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGGGGTGGTGTGACGAATCGGACACGTATCTTCGGAAGGAATTCATAGTGTGTAGCGCCACAAGAGTGCATTCTCGATTAAAAGGAGGAGGAGGAGGAAAAGGGAAGGGGAAGGCTATGTTTTGGAAGATCGATCGAGAGAGCACATGCTGTGTGTGTGTGTGTGATAAGGAGCGAAATCGAATGAAAAGAGAAAAAATCGGTAGGAACTGAAGTGCGCGGGTGGGTGTGCGCGATTATAAAAGGTACATGAAATAATGCTCTAAGCAAAAATGAGGGTAACATCAAAAGGCTGGTTCATAAGTTTAAATACGTTTAAAACACACAGACACATACACACATACACAAACATCTCCATACTAACACAAGTCCGCACCGCACCAGAAGCGAGATTAGGAAAGGGCGCATTGCATTACCTGAACAATTAAAAAAATGGGAATTACAAATTGGTTTAAGGACGAACAAATTAGACCATTACGTACGGCTGCTACACTACACAAACTGCGTGTGTACTATTAAGCGGAGCGAATCGGCCAGAAAACAAACAAAGCACACACAGGGTCATTGTTACTGAAAAGAGGAGTAATGCTTGAGGAAAGGCGCGCAGAGTGGTGTTTGAATTCATCAAACTCACAGCTGGACAAGTTCATTGCTGGAGCGCAACTC]

[+] EMBL BM625737             [CCGCCCACGCGTCCGCCCACGCGTCCGGGGGGTGGTGTGACGAATCGGACACGTATCTTCGGAAGGAATTCATAGTGTGTAGCGCCACAAGAGTGCATTCTCGATTAAAAGGAGGAGGAGGAGGAAAAGGGAAGGGGAAGGCTATGTTTTGGAAGATCGATCGAGAGAGCACATGCTGTGTGTGTGTGTGTGATAAGGAGCGAAATCGAATGAAAAGAGAAAAAATCGGTAGGAACTGAAGTGCGCGGGTGGGTGTGCGCGATTATAAAAGGTACATGAAATAATGCTCTAAGCAAAAATGAGGGTAACATCAAAAGGCTGGTTCATAAGTTTAAATACGTTTAAAACACACAGACACATACACACATACACAAACATCTCCATACTAACACAAGTCCGCACCGCACCAGAAGCGAGATTAGGAAAGGGCGCATTGCATTACCTGAACAATTAAAAAAATGGGAATTACAAATTGGTTTAAGGACGAACAAATTAGACCATTACGTACGGCTGCTACACTACACAAACTGCGTGTGTACTATTAAGCGGAGCGAATCGGCCAGAAAACAAACAAAGCACACACAGGGTCATTGTTACTGAAAAGAGGAGTAATGCTTGAGGAAAGGCGCGCAGAGTGGTGTTTGAATTCATCAAACTCACAGCTGGACAAGTTCATTGCTGGAGCGCAACTC]


>consensus_8290#2 CCGCCCACGCGTCCGCCCACGCGTCCGGGGGGTGGTGTGACGAATCGGACACGTATCTTC GGAAGGAATTCATAGTGTGTAGCGCCACAAGAGTGCATTCTCGATTAAAAGGAGGAGGAG GAGGAAAAGGGAAGGGGAAGGCTATGTTTTGGAAGATCGATCGAGAGAGCACATGCTGTG TGTGTGTGTGTGATAAGGAGCGAAATCGAATGAAAAGAGAAAAAATCGGTAGGAACTGAA GTGCGCGGGTGGGTGTGCGCGATTATAAAAGGTACATGAAATAATGCTCTAAGCAAAAAT GAGGGTAACATCAAAAGGCTGGTTCATAAGTTTAAATACGTTTAAAACACACAGACACAT ACACACATACACAAACATCTCCATACTAACACAAGTCCGCACCGCACCAGAAGCGAGATT AGGAAAGGGCGCATTGCATTACCTGAACAATTAAAAAAATGGGAATTACAAATTGGTTTA AGGACGAACAAATTAGACCATTACGTACGGCTGCTACACTACACAAACTGCGTGTGTACT ATTAAGCGGAGCGAATCGGCCAGAAAACAAACAAAGCACACACAGGGTCATTGTTACTGA AAAGAGGAGTAATGCTTGAGGAAAGGCGCGCAGAGTGGTGTTTGAATTCATCAAACTCAC AGCTGGACAAGTTCATTGCTGGAGCGCAACTC



consensusID : consensus_8290#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence
                              [CTGGAGTCTGATCATATTCTTAGCTCAAGTTCGATCAGCAGATCTTCACTTAAGTGCAAATCATGCCGGATTACAAGGTTTACTATTTCAACGTAAAAGCTCTGGGCGAACCACTGCGGTTCCTGCTGTCTTACGGCAACCTTCCGTTCGATGATGTGAGGATCACCCGCGAAGAATGGCCAGCACTCAAGCCAACAATGCCGATGGGTCAGATGCCGGTACTGGAGGTTGACGGCAAAAAAGTGCACCAGTCGGTCGCTATGTCTCGCTATCTGGCCAACCAGGTCGGTTTGGCCGGCGCTGATGATTGGGAGAACTTGATGATTGACACCGTGGTCGGCACGGTGAACGATTTCCGTCTAAAGATTGCCGTTGTCTCTTACGAGCCGGACGATGAGATCAAGGAGAAGAAATTGGTTACTTTGAACAACGAGGTCATTCCATTCTATCTGGAGAAGCTGCACTGCCGCGAACAGTTTCGAGGCAGAACGATTTTGTTTCTCTGCAGAAGAAATGCGTCGGAATAATTGAAATACAGCAAAAATATGGAAATAAACATGTTCGTGATAGCACGGACAAACAAGAACCGTAAAAAAAAAAAAAAAAAAAAGGCCACATGTTCTCGAGCTTTG]

[+] EMBL CNS08EPF             [CTGGAGTCTGATCATATTCTTAGCTCAAGTTCGATCAGCAGATCTTCACTTAAGTGCAAATCATGCCGGATTACAAGGTTTACTATTTCAACGTAAAAGCTCTGGGCGAACCACTGCGGTTCCTGCTGTCTTACGGCAACCTTCCGTTCGATGATGTGAGGATCACCCGCGAAGAATGGCCAGCACTCAAGCCAACAATGCCGATGGGTCAGATGCCGGTACTGGAGGTTGACGGCAAAAAAGTGCACCAGTCGGTCGCTATGTCTCGCTATCTGGCCAACCAGGTCGGTTTGGCCGGCGCTGATGATTGGGAGAACTTGATGATTGACACCGTGGTCGGCACGGTGAACGATTTCCGTCTAAAGATTGCCGTTGTCTCTTACGAGCCGGACGATGAGATCAAGGAGAAGAAATTGGTTACTTTGAACAACGAGGTCATTCCATTCTATCTGGAGAAGCTGCACTGCCGCGAACAGTTTCGAGGCAGAACGATTTTGTTTCTCTGCAGAAGAAATGCGTCGGAATAATTGAAATACAGCAAAAATATGGAAATAAACATGTTCGTGATAGCACGGACAAACAAGAACCGTAAAAAAAAAAAAAAAAAAAAGGCCACATGTTCTCGAGCTTTG]


>consensus_8290#3 CTGGAGTCTGATCATATTCTTAGCTCAAGTTCGATCAGCAGATCTTCACTTAAGTGCAAA TCATGCCGGATTACAAGGTTTACTATTTCAACGTAAAAGCTCTGGGCGAACCACTGCGGT TCCTGCTGTCTTACGGCAACCTTCCGTTCGATGATGTGAGGATCACCCGCGAAGAATGGC CAGCACTCAAGCCAACAATGCCGATGGGTCAGATGCCGGTACTGGAGGTTGACGGCAAAA AAGTGCACCAGTCGGTCGCTATGTCTCGCTATCTGGCCAACCAGGTCGGTTTGGCCGGCG CTGATGATTGGGAGAACTTGATGATTGACACCGTGGTCGGCACGGTGAACGATTTCCGTC TAAAGATTGCCGTTGTCTCTTACGAGCCGGACGATGAGATCAAGGAGAAGAAATTGGTTA CTTTGAACAACGAGGTCATTCCATTCTATCTGGAGAAGCTGCACTGCCGCGAACAGTTTC GAGGCAGAACGATTTTGTTTCTCTGCAGAAGAAATGCGTCGGAATAATTGAAATACAGCA AAAATATGGAAATAAACATGTTCGTGATAGCACGGACAAACAAGAACCGTAAAAAAAAAA AAAAAAAAAAGGCCACATGTTCTCGAGCTTTG



consensusID : consensus_8290#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence
                              [CCGGAGCAGGCAGCGGAAGCAGCAGCAGCAGCAGCAGCAGTAAATCGTAAGCCGCAGTAGTTAGCAGTTGTCGCCCGAGAGTGTTCGCAGAGCCCAGCAGAGCGTCACCCGAGATTCAGCCAAGCACCAGCAGCAAACACTATCCACCCACCACACCGTGAGAGCGATGAATTGTACTATGCAACATGTATGCGATATCAAAATTAGACTAGAGAAAAAGACCCCGAAGCAAAAGAAAGCAAACAGCAATTTGATGGAAACTGAAAAAAAAAATGCCAACAACGAAACGACCAGTTTTTTTTCTATATTTGCATATAAGCAAAACAAAACAAATCAAACAAAACAGGAGGAGAGGAGAGAGCAATCAAAGCAGCAAGTAAGCATGAACTTCACTGGTGATAGTTGTAAAAGGGGGTTGAATTTTGAATTAATATATGTAGGCTTTTACACCACTATTTAGGGTTTTTGCATGTTAAGTTTTATTTACCGATCCCACTTTGTCG]

[+] EMBL BM623204             [CCGGAGCAGGCAGCGGAAGCAGCAGCAGCAGCAGCAGCAGTAAATCGTAAGCCGCAGTAGTTAGCAGTTGTCGCCCGAGAGTGTTCGCAGAGCCCAGCAGAGCGTCACCCGAGATTCAGCCAAGCACCAGCAGCAAACACTATCCACCCACCACACCGTGAGAGCGATGAATTGTACTATGCAACATGTATGCGATATCAAAATTAGACTAGAGAAAAAGACCCCGAAGCAAAAGAAAGCAAACAGCAATTTGATGGAAACTGAAAAAAAAAATGCCAACAACGAAACGACCAGTTTTTTTTCTATATTTGCATATAAGCAAAACAAAACAAATCAAACAAAACAGGAGGAGAGGAGAGAGCAATCAAAGCAGCAAGTAAGCATGAACTTCACTGGTGATAGTTGTAAAAGGGGGTTGAATTTTGAATTAATATATGTAGGCTTTTACACCACTATTTAGGGTTTTTGCATGTTAAGTTTTATTTACCGATCCCACTTTGTCG]


>consensus_8290#4 CCGGAGCAGGCAGCGGAAGCAGCAGCAGCAGCAGCAGCAGTAAATCGTAAGCCGCAGTAG TTAGCAGTTGTCGCCCGAGAGTGTTCGCAGAGCCCAGCAGAGCGTCACCCGAGATTCAGC CAAGCACCAGCAGCAAACACTATCCACCCACCACACCGTGAGAGCGATGAATTGTACTAT GCAACATGTATGCGATATCAAAATTAGACTAGAGAAAAAGACCCCGAAGCAAAAGAAAGC AAACAGCAATTTGATGGAAACTGAAAAAAAAAATGCCAACAACGAAACGACCAGTTTTTT TTCTATATTTGCATATAAGCAAAACAAAACAAATCAAACAAAACAGGAGGAGAGGAGAGA GCAATCAAAGCAGCAAGTAAGCATGAACTTCACTGGTGATAGTTGTAAAAGGGGGTTGAA TTTTGAATTAATATATGTAGGCTTTTACACCACTATTTAGGGTTTTTGCATGTTAAGTTT TATTTACCGATCCCACTTTGTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8290#0      TTGCTCCAAATCTACCACATAGGGCATGAACTGGAAAGGTGTGCTCTATCGAGAGGAAAT 60
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      TTATTCTTGCACGCTCTATTAATAGAAGAACGCCATGCGACTCATAGATTAGTTAAATTG 120
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      CATGGAGCTGGGATGTGCGTAACAGCAATACGATTGTACTGTATAAGGAGAAAGCAGTTT 180
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      CTTGTAGCGGTCACATTTTCTATGATTTGAGTAATTGTGGTCATCAATCATCTAAATGTT 240
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      TTTCGAAGAGTGCTTCATCGCATATCTTACATTACTATTATCTACAGAACAAAGACACAT 300
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      -------------------------CCGCCCACGCGTCCGCGAACAGCACGCCAAGTGTG 35
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      CCGCGACTGCAACGAATGCAGATAGTCTTCTGCTATAGATAATAGCCCTGCAAGATATTG 360
consensus_8290#4      --------------------------------------------------CCGGAGCAGG 10
consensus_8290#1      CGACGCGAGTGAGGACGGTTGCGCGATAGCAGAGTTATGGTGGTGGAGTGTGCGCGCATC 95
consensus_8290#2      -----------------------CCGCCCACGCGTCCGCCCACGCGTCCGGGGGGTGGTG 37
consensus_8290#3      --------------------------------------------CTGGAGTCTGATCATA 16
                                                                           *      

consensus_8290#0      CAACGGACGTATACCTCAACACAAG--CAACCTTC--TCGCATCCCTCACCGTATGGATG 416
consensus_8290#4      CAGCGGAAGCA-GCAGCAGCAGCAG--CAGCAGTAAATCGTAAGCCGCAGTAGTTAGCAG 67
consensus_8290#1      AAACAGACCCGCAACGCGGTACTAA--CTAGGCAGGACCGGCGACCGTTGCGAGCA-CAG 152
consensus_8290#2      TGACGAATCGGACACGTATCTTCGG--AAGGAATTCATAGTGTGTAGCGCCACAAGAGTG 95
consensus_8290#3      TTCTTAGCTCAAGTTCGATCAGCAGATCTTCACTTAAGTGCAAATCATGCCGGATTACAA 76
                                                             *                    

consensus_8290#0      TACACGCCCGCCTCGGCATCCAAGGGTTGACGACCATTTGTGCTTGATTTGTCACACTAA 476
consensus_8290#4      TTGTCGCCCGAGAGTGTTCGCAGAGCCCAGCAGAGCGTCACCCGAGAT---TCAGCCAAG 124
consensus_8290#1      TCTACGATCGGACAGGGACCCAAACGGAGGTAGGCCATCGC---AGAGTGGACAACTCCT 209
consensus_8290#2      CATTCTCGATTAAAAGGAGGAGGAGGAGGAAAAGGGAAGGGGAAGGCTATGTTTTGGAAG 155
consensus_8290#3      GGTTTACTATTTCAACGTAAAAGCTCTGGGCGAACCACTGCG--GTTCCTGCTGTCTTAC 134
                                                                                  

consensus_8290#0      TAGGAATAGCACAACATATTTCTT-CTGCCAC-GCATTG-GCGCTTTGATACTATGC--- 530
consensus_8290#4      CACCAGCAGCA-AACACTATCCAC-CCACCAC-ACCGTGAGAGCGATGA-ATTGTAC--- 177
consensus_8290#1      TTCCAGCTCGA-AGTGCTACCCCCGCCACCGCGATACTAGAAGCTACAA-ATCGTGCCAG 267
consensus_8290#2      ATCGATCGAGAGAGCACATGCTGTGTGTGTGT-GTGTGATAAGGAGCGAAATCGAATGAA 214
consensus_8290#3      GGCAACCTTCCGTTCGATGATGTGAGGATCAC-CCGCGAAGAATGGCCA----GCACTCA 189
                          *                                           *           

consensus_8290#0      TTTTGGTTACTTTCTTCTGCCACGCATTGGCGCTTTGTAACTGAATTTTTGATTTTCAGC 590
consensus_8290#4      TAT--GCAACATGTATGCG----ATATCAAAATTAGACTAGAGAAAAA--GACCCCGAAG 229
consensus_8290#1      TGTAAAAACCTTCCATTCCAGCAGTACTAAAAGTTAGTAAAGTCTGAAGTGTCTAAGTAC 327
consensus_8290#2      AAGAGAAAAAATCGGTAGG------AACTGAAGTGCGCGGGTGGGTGT--GCGCGATTAT 266
consensus_8290#3      AGCCAACAATGCCGATGGGTCAGATGCCGGTACTGGA-GGTTGACGGCAAAAAAGTGCAC 248
                                     *                 *                          

consensus_8290#0      CTCGCATAGGCACAATAACGTATCATTTACA-ACAGAGCAGACCCTAGCCAGTGGAAAGA 649
consensus_8290#4      CAAAAGAAAGCA-AACAGCAATTTGATGGAA-ACTGAAAAAAAAAATGCCAACAACGAAA 287
consensus_8290#1      ACCAAGTAAAGTGAGCCACGAAACAAAAAAACACTTAAAAGATAGCTGTGTAGAGTGTAG 387
consensus_8290#2      AAAAGGTACATGAAATAATGCTCTAAGCAAAAATGAGGGTAACATCAAAAGGCTGGTTCA 326
consensus_8290#3      CAGTCGGTCGCTATGTCTCGCTATCTGGCCA-ACCAGGTCGGTTTGGCCGGCGCTGATGA 307
                                                    * *                           

consensus_8290#0      ATA---TCGCACA-TGCTGCCAACAATTGTACA-ATTCAAACTATCTCGAATTAC---GG 701
consensus_8290#4      CGA---CCA-GTT-TTTTTTCTATATTTGCATATAAGCAAAACAAAACAAATCA----AA 338
consensus_8290#1      TTATACCCAAATCGCCTTGGCTGTGCGTGTTTAGTGACCAGTTTCGACCAGTGAATGCAG 447
consensus_8290#2      TAAGTTTAAATACGTTTAAAACACACAGACACATACACACATACACAAACATCTCCATAC 386
consensus_8290#3      TTGGGAGAACTTGATGATTGACACCGTGGTCGGCACGGTGAACGATTTCCGTCTAAAGAT 367
                                                                         *        

consensus_8290#0      TACTTCAACATCCATTAT---TAACGGGGGTCTTATCAAAAAAAAATCCCTGATT--ACA 756
consensus_8290#4      CAAAACAGGAGG-AGAGG---AGAGAGCAATCAAAGCAGCAAGTAAGCATGAACT--TCA 392
consensus_8290#1      CAAACCCTTCTGAAGTGACCCACAGAGCGAGATAATGGGCAACGGGACGAAAGCCACCCA 507
consensus_8290#2      TAACACAAGTCCGCACCGCACCAGAAGCGAGATTAGGAAAGGGCGCATTGCATTACCTGA 446
consensus_8290#3      TGCCGTTGTCTCTTACGAGCCGGACGATGAGATCAAGGAGAAGAAATTGGTTACT-TTGA 426
                                                        *                        *

consensus_8290#0      CCCATCGT--TAAGAATCGA---TAGTTGGACTCAATAGTGA-ATCA-AAACGATCGATC 809
consensus_8290#4      CTGGTGATAGTTGTAAAAGG---GGGTTGAATTTTGAATTAATATAT-GTAGGCTTTTAC 448
consensus_8290#1      GCAACGGCAGCCGGAAGAGGATCGGGCCGATCTAGCGTCCACTGTGG-AGGAGGAGGAAC 566
consensus_8290#2      ACAATTAAAAAAATGGGAATTACAAATTGGTTTAAGGACGAACAAATTAGACCATTACGT 506
consensus_8290#3      ACAACGAGGTCATTCCATTCTATCTGGAGAAGCT-GCACTGCCGCGAACAGTTTCGAGGC 485
                                                  *                               

consensus_8290#0      AACACTGCTTGCTCTGTTTTCGTGCGAAGTTGCCTTTGCTTG-CCGGTGGCAAGCGTC-A 867
consensus_8290#4      ACCACTATTTAGGGTTTTTGCATGTTAAGTT----TTATTTA-CCGATCCCA--CTTT-G 500
consensus_8290#1      GCGAGCAGCT--GACCGCCCCGTCCAATCTGCACTACATTCAGCCGAGCTTCATTTTC-G 623
consensus_8290#2      ACGGCTGCT---ACACTACACAAACTGCGTGTGTACTATTAAGCGGAGCGAATCGGCCAG 563
consensus_8290#3      AGAACGATTTTGTTTCTCTGCAGAAGAAATGCGTCGGAATAATTGAAATACAGCAAAAAT 545
                                          *        *         *                    

consensus_8290#0      TTAACTTAATTGTCACACCTTGGTATGGTCTTCAAAACGGCGGGTCGACTGACCAGCTGC 927
consensus_8290#4      TCG--------------------------------------------------------- 503
consensus_8290#1      CTCATAAGTGAAAAGCAATGGAAACCGGACGTGGAAAGGCAGCAGGATGTGCCGGTGTAT 683
consensus_8290#2      AAAACAAACAAAGCACACACAGGGTCATTGTTACTGAAAAGAGGAGTAATGCTTGAGGAA 623
consensus_8290#3      ATGGAAATAAACATGTTCGTGATAGCACGGACAAACAAGAACCGTAAAAAAAAAAAAAAA 605
                                                                                  

consensus_8290#0      CAGATCCCACAGTCGAAGAGTTTTGTCCCACGATCCGGACAGAGCGTAGTTGCCGTCGGA 987
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      GGAAGGACCACGATG--------------------------------------------- 698
consensus_8290#2      AGGCGCGCAGAGTGGTGTTTGAATTCATCAAACTCACAGCTGGACAAGTTCATTGCTGGA 683
consensus_8290#3      AAAAAGGCCACATGTTCTCGAGCTTTG--------------------------------- 632
                                                                                  

consensus_8290#0      GGACAGCACTACATCGGAAATGAAGTGCGAGTGTCCGTACAGACGCTTCTGAGGAATGCC 1047
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      GCGCAACTC--------------------------------------------------- 692
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GTAGCTCAGCTCATCACGGGTCAATTTCCATACGATCAGCGTCTTGTCACGAGACGAAGA 1107
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      CAGGATCATGTCCGGGTACTTCGGATTGGTGGCGATCTGCGTCACCCATCCAGAGTGGCC 1167
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      AAGCAGCTGGCCGCGCAGTTGCAGTGTTTCAGTCATTTTCGGTTCTATTCACAAATTTCA 1227
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      CACTTTGCCAAGCGATTCGTTTTCGCGAGCAGCGAAATTCACGTCCGCGGACGCGTGGGC 1287
consensus_8290#4      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
consensus_8290#2      ------------------------------------------------------------
consensus_8290#3      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GG 1289
consensus_8290#4      --
consensus_8290#1      --
consensus_8290#2      --
consensus_8290#3      --
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)