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Anopheles gambiae
cluster # 8301 cluster # 8301       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8301#0 length = 1056 sequences # 5  
consensus_8301#1 length = 989 sequences # 1  
consensus_8301#2 length = 808 sequences # 2  
consensus_8301#3 length = 549 sequences # 1  
consensus_8301#4 length = 478 sequences # 1  

consensusID : consensus_8301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1056
fasta sequence
                              [CGACCCACGCGTCCGAGCAATTCTCCCAAAGTGATAGATAACGTACGTTGCGCGTGTGACAAGCGAGAACCTAGAAGCTACGGGTTAGACAAGTAAGCCTACCGATATATATATACCTATAGCTCCTCCATCGGTGAAACGTGAATCGTGAAAGGGACCCATCTCGTGGGGCCGTTGGCGAGTCGCCCTATGGCCACACACTAACTTTGACAAGAAGAAGCCACCTGATAAAAGACAAAGCAACCAAACGTAGCAGGAAAAGGGACCAGTCACTCATATTTACACTTTATGCTGTAAGGATCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGATG--AAAAAATTAAAGTGGAACAAAACTATTGTCGAGCTTGTTGTTGGGTTTGCTGTTTTTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTACGTGTGTGTATTTGTATGCTTTTCAGCAAGCAAAGCAAACACACTTGAAAATAAACATCAAACCAGATAAATTGTAATTGTTAGTTGGAAAACAAAAATATTGGAGCAAGATTTGGTTGGAAAAATAGTTCGGAAAACNATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATCCGTTCCTATCGGTAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAAAGGTTATTTTGAAGAGCATCCCTGTTTTTCTTCCCATTTGGTTTATTGACTATGAAAATGCTCGNTACATCACAATGATCNCAGCGTAGTGCCCCAG]

[+] EMBL BM604210             [CGACCCACGCGTCCGAGCAATTCTCCCAAAGTGATAGATAACGTACGTTGCGCGTGTGACAAGCGAGAACCTAGAAGCTACGGGTTAGACAAGTAAGCCTACCGATATATATATACCTATAGCTCCTCCATCGGTGAAACGTGAATCGTGAAAGGGACCCATCTCGTGGGGCCGTTGGCGAGTCGCCCTATGGCCACACACTAACTTTGACAAGAAGAAACCACCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM593143             [            CCGAGCAATTCTCCCAAAGTGATAGATAACGTACGTTGCGCGTGTGACAAGCGAGAACCTAGAAGCTACGGGTTAGACAAGTAAGCCTACCGATATATATATACCTATAGCTCCTCCATCGGTGAAACGTGAATCGTGAAAGGGACCCATCTCGTGGGGCCGTTGGCGAGTCGCCCTATGGCCACACACTAACTTTGACAAGAAGAAGCCACCTGATAAAAGACAAAGCAACCAAACGTAGCAGGAAAAGGGACCAGTCACTCATATTTACACTTTATGCTGTAAGGATCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGATG  AAAAAATTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX621779             [                                                                                                                          CTCCTCCATCGGTGAAACATGAATCGTGAAAGGGACCCATCCCGTGGGGCCGTTGGCGAGTCGCCCTTCGGCTACACACTAACTTTGACAAGAAGAAGCCACCTGATAAAAGACAAAGCAACCAAACGTAGCAGGAAAAGGGACCAGTCACTCATATTTACACTTTATGCTGTAAGGATCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTACCGTCGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGA AGTTTTTTTTTCTTTGCTTGGCTGATTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATGTTTAAGATGAAAAAAAATTAAAGTGGAACAAAACTATTGTCGAGCTTGTTGTTGGGTTTGCTGTTTTTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTACGTGTGTGTATTTGTATGCTTTTCAGCAAGCAAAGCAAACACACTTGAAAATAAACATCAAACCAGATAAATTGTAATTGTTAGTTGGAAAACAAAAATATTGGAGCAAGATTTGGTTGGAAAAATAGTTCGGAAAACNATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAAT                                                                                                                                                 ]
[+] EMBL BX617579             [                                                                                                                                                                                     GTCGCCCTATGGCCACACACTAACTTTGACAAGAAGAAGCCACCTGATAAAAGACAAAGCAACCAAACGTAGCAGGAAAAGGGACCAGTCACTCATATTTACACTTTATGCTGTAAGGATCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX622706             [                                                                                                                                                                                                                                                                                                                  CATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGATG  AAAAAATTAAAGTGGAACAAAACTATTGTCGAGCTTGCTGTTGGGTTTGCTGTTTTTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTGCGTATGT T TTTG  TGCTTGTCATCAAGCAAAGCAAACACACTGAAAAATATACTTCAAACCAGATGGATTG    TGTTAGTTGGAAAACAAAAATATTGGAGCAAGATTTGGTTGGAAAAATCGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATCCGTTCCTATCGGTAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAAAGGTTATTTTGAAGAGCATCCCTGTTTTTCTTCCCATTTGGTTTATTGACTATGAAAATGCTCGNTACATCACAATGATCNCAGCGTAGTGCCCCAG]


>consensus_8301#0 CGACCCACGCGTCCGAGCAATTCTCCCAAAGTGATAGATAACGTACGTTGCGCGTGTGAC AAGCGAGAACCTAGAAGCTACGGGTTAGACAAGTAAGCCTACCGATATATATATACCTAT AGCTCCTCCATCGGTGAAACGTGAATCGTGAAAGGGACCCATCTCGTGGGGCCGTTGGCG AGTCGCCCTATGGCCACACACTAACTTTGACAAGAAGAAGCCACCTGATAAAAGACAAAG CAACCAAACGTAGCAGGAAAAGGGACCAGTCACTCATATTTACACTTTATGCTGTAAGGA TCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTAT GTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGT ACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTT GATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTA CACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGA TGAAAAAATTAAAGTGGAACAAAACTATTGTCGAGCTTGTTGTTGGGTTTGCTGTTTTTC TATTGAAAATAGCAACCATCACTCTCGGCTGTGTACGTGTGTGTATTTGTATGCTTTTCA GCAAGCAAAGCAAACACACTTGAAAATAAACATCAAACCAGATAAATTGTAATTGTTAGT TGGAAAACAAAAATATTGGAGCAAGATTTGGTTGGAAAAATAGTTCGGAAAACNATTCCA AATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAA ATCATCCAAATCCGTTCCTATCGGTAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAAA GGTTATTTTGAAGAGCATCCCTGTTTTTCTTCCCATTTGGTTTATTGACTATGAAAATGC TCGNTACATCACAATGATCNCAGCGTAGTGCCCCAG



consensusID : consensus_8301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 989
fasta sequence
                              [CAGAATCCCCCGAGGTTTATGCTGTAAGGATCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTACCGTCGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAAGTTTTTTTTTCTTTGCTTGGCTGATTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATGTTTAAGATGAAAAAAAATTAAAAGTGGAACAAAACTATTGTCGAGCTTGTGTGGGTTTGCTGTTTTNCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTACGTGTGTGTATTCTGTATGCTTCTTCAGCAAGCAAAGCAAACACACTTGANACATAAACATCAAACCACGCATAACATNTGTNNCCTCTGTTCAGTCTGGAAAACCAAAAATATTGGAGCAGATTCTGGTCTGGAACAAATAGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGCATGCGACTGCTTAGTGCCGTTAATATTAATCATCCAAATCCGTTCCTATCGATAAGCAGCAAAGACTAGAGGCATAGATAAGGCNNAAAACAGGGTANTATCATCTGAAGNAGGCATCCCTGGTTTCTTCCCCATGAGGTTCCCATTGACCTGGTGCAACATGCTCGTCAAACAATGANTCACCAAATGGANTCGCCAAGCCNGTAAGTGCCGCAGGNTACACAGCTTTGGGGCCCTCTTGTTNACCACTTTAACCAACACNGTGGTGNATTCCGTCGANCAGGCCANGNTGTAANCGNNAACGGGCGACANNGTAATGGCGGCCAAACACACAAGAAACCTAACTATTNGTACCGGAACACAGCTGTGCC]

[+] EMBL AL694056             [CAGAATCCCCCGAGGTTTATGCTGTAAGGATCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTACCGTCGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAAGTTTTTTTTTCTTTGCTTGGCTGATTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATGTTTAAGATGAAAAAAAATTAAAAGTGGAACAAAACTATTGTCGAGCTTGTGTGGGTTTGCTGTTTTNCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTACGTGTGTGTATTCTGTATGCTTCTTCAGCAAGCAAAGCAAACACACTTGANACATAAACATCAAACCACGCATAACATNTGTNNCCTCTGTTCAGTCTGGAAAACCAAAAATATTGGAGCAGATTCTGGTCTGGAACAAATAGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGCATGCGACTGCTTAGTGCCGTTAATATTAATCATCCAAATCCGTTCCTATCGATAAGCAGCAAAGACTAGAGGCATAGATAAGGCNNAAAACAGGGTANTATCATCTGAAGNAGGCATCCCTGGTTTCTTCCCCATGAGGTTCCCATTGACCTGGTGCAACATGCTCGTCAAACAATGANTCACCAAATGGANTCGCCAAGCCNGTAAGTGCCGCAGGNTACACAGCTTTGGGGCCCTCTTGTTNACCACTTTAACCAACACNGTGGTGNATTCCGTCGANCAGGCCANGNTGTAANCGNNAACGGGCGACANNGTAATGGCGGCCAAACACACAAGAAACCTAACTATTNGTACCGGAACACAGCTGTGCC]


>consensus_8301#1 CAGAATCCCCCGAGGTTTATGCTGTAAGGATCAATTCATGCCCTGTGACCTCCTGAATGA TTGCGTCATTTATTGTCGTGCTGTTTCTATGTTAGGTCTTAAGAGCACTTTTCGCGATGC ATATTTCAGACATTCTCTACCGTCGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTT GTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAAGTTTTTTTTTCTT TGCTTGGCTGATTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAA ATCTCGTCCCTTATAATAGATGTTTAAGATGAAAAAAAATTAAAAGTGGAACAAAACTAT TGTCGAGCTTGTGTGGGTTTGCTGTTTTNCTATTGAAAATAGCAACCATCACTCTCGGCT GTGTACGTGTGTGTATTCTGTATGCTTCTTCAGCAAGCAAAGCAAACACACTTGANACAT AAACATCAAACCACGCATAACATNTGTNNCCTCTGTTCAGTCTGGAAAACCAAAAATATT GGAGCAGATTCTGGTCTGGAACAAATAGTTCGGAAAACAATTCCAAATCAGTTTGCAAAA GCCGAGAACAGCAGATGCATGCGACTGCTTAGTGCCGTTAATATTAATCATCCAAATCCG TTCCTATCGATAAGCAGCAAAGACTAGAGGCATAGATAAGGCNNAAAACAGGGTANTATC ATCTGAAGNAGGCATCCCTGGTTTCTTCCCCATGAGGTTCCCATTGACCTGGTGCAACAT GCTCGTCAAACAATGANTCACCAAATGGANTCGCCAAGCCNGTAAGTGCCGCAGGNTACA CAGCTTTGGGGCCCTCTTGTTNACCACTTTAACCAACACNGTGGTGNATTCCGTCGANCA GGCCANGNTGTAANCGNNAACGGGCGACANNGTAATGGCGGCCAAACACACAAGAAACCT AACTATTNGTACCGGAACACAGCTGTGCC



consensusID : consensus_8301#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 808
fasta sequence
                              [TCGCCCGAGGTTNACTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGATGAAAAAATTAAAGTGGAACAAAACTATTGTCGAGCTTGCTGTTGGGTTTGCTGTTNTTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTGCGTATGTTTTTGTGCTTGTCATCAAGCAAAGCAAACACACTGAAAAATATACTTCAAACCAGATGGATTGTGTTAGTTGGAAAACAAAAATATTGGAGCAAGATTTGGTTGGAAAAATCGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATCCGTTCCTATCGGTAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAACAGGTT-TATTTTGAAGAGCATCCCTGTTTTTCTTNCCATTTGGTTTTATTGACTATGAAATGCTCGTTACAATCACAATGATCGCAGCGTANTGCCGCANGTAAAGTTGGGCCATTTTGTTAACACTTAAGACAGTGNGATTCCNTTTTGCCAATGCAACGGAACGGGAAAGTANATGGGCCAAAAAAAGGAAACCTACTATTGTACGGAACAGTGTGGAA]

[+] EMBL AL933195             [TCGCCCGAGGTTNACTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGTACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTACACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGATGAAAAAATTAAAGTGGAACAAAACTATTGTCGAGCTTGCTGTTGGGTTTGCTGTTNTTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTGCGTATGTTTTTGTGCTTGTCATCAAGCAAAGCAAACACACTGAAAAATATACTTCAAACCAGATGGATTGTGTTAGTTGGAAAACAAAAATATTGGAGCAAGATTTGGTTGGAAAAATCGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATCCGTTCCTATCGGTAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAACAGGTT TATTTTGAAGAGCATCCCTGTTTT                                                                                                                                                                                               ]
[+] EMBL BX620719             [                                                                                                                                                                                                                                                                                  GCTGTTGGGTTTGCTGTTTTTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTGCGTATGTTTTTGTGCTTGTCATCAAGCAAAGCAAACACACTGAAAAATATACTTCAAACCAGATGGATTGTGTTAGTTGGAAAACAAAAATATTGGAGCAAGATTTGGTTGGAAAAATCGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATCCGTTCCTATCGGTAAGCAGCAAAGACTANAGGATAGATAAGGCGAAA AGGTTNTATTTTGAANAGCATCCCTGTTTTTCTTNCCATTTGGTTTTATTGACTATGAAATGCTCGTTACAATCACAATGATCGCAGCGTANTGCCGCANGTAAAGTTGGGCCATTTTGTTAACACTTAAGACAGTGNGATTCCNTTTTGCCAATGCAACGGAACGGGAAAGTANATGGGCCAAAAAAAGGAAACCTACTATTGTACGGAACAGTGTGGAA]


>consensus_8301#2 TCGCCCGAGGTTNACTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGTACCG CGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTTGATA CGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTACACA TACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGATGAA AAAATTAAAGTGGAACAAAACTATTGTCGAGCTTGCTGTTGGGTTTGCTGTTNTTCTATT GAAAATAGCAACCATCACTCTCGGCTGTGTGCGTATGTTTTTGTGCTTGTCATCAAGCAA AGCAAACACACTGAAAAATATACTTCAAACCAGATGGATTGTGTTAGTTGGAAAACAAAA ATATTGGAGCAAGATTTGGTTGGAAAAATCGTTCGGAAAACAATTCCAAATCAGTTTGCA AAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATC CGTTCCTATCGGTAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAACAGGTTTATTTTG AAGAGCATCCCTGTTTTTCTTNCCATTTGGTTTTATTGACTATGAAATGCTCGTTACAAT CACAATGATCGCAGCGTANTGCCGCANGTAAAGTTGGGCCATTTTGTTAACACTTAAGAC AGTGNGATTCCNTTTTGCCAATGCAACGGAACGGGAAAGTANATGGGCCAAAAAAAGGAA ACCTACTATTGTACGGAACAGTGTGGAA



consensusID : consensus_8301#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [TATGCTCTATGCAAGAATTGCAGCNAGGNTAAGCGAGAACTAGAAGCTACGCGGTTAGACTAAGTAANCCTACCGATATATATACCAATAGCTCCTCCATCGGTGAAACGTGAATCGTGAAAGGGACCCATCCCGTGGGGCCGTTGGGAGTCGCCCTATGGCACACACTAAATTTTGACAAGAAAGAAAGCCACTGATAAAAGACAAAGCAAACAAACGTAGCAGGAAAAACGGGACCAGTCACTCATATTTTACACTTTTATGCCTGTAAGCGATCAATTCATGCCCTGTGANCTCCTGAATTGATTGGGGTCACTTTTATTGTCGTGCNTGTTTTCTATGTTAAGGGTCTTAAGAAGACACGTTTTTCAGCAGAATTGNATAATTTTNCCAGNAACNATNTCTNCATAATACNGTCGGACGCAGATTAGCTCGNAGAGTACGGGNGAATTNTTTTCTTACATACTGTACGAGTTGTATTGAGTTAATGATCAAGGAAGNTGTCTCGGGNACGCTCGTAGTACTGAATTNGGGAGGGGGAATGTNTTT]

[+] EMBL AL696603             [TATGCTCTATGCAAGAATTGCAGCNAGGNTAAGCGAGAACTAGAAGCTACGCGGTTAGACTAAGTAANCCTACCGATATATATACCAATAGCTCCTCCATCGGTGAAACGTGAATCGTGAAAGGGACCCATCCCGTGGGGCCGTTGGGAGTCGCCCTATGGCACACACTAAATTTTGACAAGAAAGAAAGCCACTGATAAAAGACAAAGCAAACAAACGTAGCAGGAAAAACGGGACCAGTCACTCATATTTTACACTTTTATGCCTGTAAGCGATCAATTCATGCCCTGTGANCTCCTGAATTGATTGGGGTCACTTTTATTGTCGTGCNTGTTTTCTATGTTAAGGGTCTTAAGAAGACACGTTTTTCAGCAGAATTGNATAATTTTNCCAGNAACNATNTCTNCATAATACNGTCGGACGCAGATTAGCTCGNAGAGTACGGGNGAATTNTTTTCTTACATACTGTACGAGTTGTATTGAGTTAATGATCAAGGAAGNTGTCTCGGGNACGCTCGTAGTACTGAATTNGGGAGGGGGAATGTNTTT]


>consensus_8301#3 TATGCTCTATGCAAGAATTGCAGCNAGGNTAAGCGAGAACTAGAAGCTACGCGGTTAGAC TAAGTAANCCTACCGATATATATACCAATAGCTCCTCCATCGGTGAAACGTGAATCGTGA AAGGGACCCATCCCGTGGGGCCGTTGGGAGTCGCCCTATGGCACACACTAAATTTTGACA AGAAAGAAAGCCACTGATAAAAGACAAAGCAAACAAACGTAGCAGGAAAAACGGGACCAG TCACTCATATTTTACACTTTTATGCCTGTAAGCGATCAATTCATGCCCTGTGANCTCCTG AATTGATTGGGGTCACTTTTATTGTCGTGCNTGTTTTCTATGTTAAGGGTCTTAAGAAGA CACGTTTTTCAGCAGAATTGNATAATTTTNCCAGNAACNATNTCTNCATAATACNGTCGG ACGCAGATTAGCTCGNAGAGTACGGGNGAATTNTTTTCTTACATACTGTACGAGTTGTAT TGAGTTAATGATCAAGGAAGNTGTCTCGGGNACGCTCGTAGTACTGAATTNGGGAGGGGG AATGTNTTT



consensusID : consensus_8301#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGTGGAAAAATAGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATCCGTTCCTATCGATAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAAAGGTTTATTTTGAAGAGCATCCCTGCTTTTCTTCCCATTTGGTTTTATTGACTGTGAAATGCTCGTCACAATGATCACAATGATCGCAGCGTAGTGCCGCAGGTAAAGTTGGGCCATTTGTTAACACTTAAGACAGTGTGATTCGTTTTGCCAGTGTAACGGAACGGGAAAGTAAATGGGCCAAAAAAAAAGAAACCTACTATTGTACGGAACAGTGTGGAAAGATTTCTAGTTTAAGAATATTGTCAATAAAGGAACAAAAGATTGCATGCTAAAAACAGACGAAAATATAGAATGTATATTT]

[+] EMBL BM598938             [CCGCGGACGCGTGGGCGGACGCGTGGGTGGAAAAATAGTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCATCCAAATCCGTTCCTATCGATAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAAAGGTTTATTTTGAAGAGCATCCCTGCTTTTCTTCCCATTTGGTTTTATTGACTGTGAAATGCTCGTCACAATGATCACAATGATCGCAGCGTAGTGCCGCAGGTAAAGTTGGGCCATTTGTTAACACTTAAGACAGTGTGATTCGTTTTGCCAGTGTAACGGAACGGGAAAGTAAATGGGCCAAAAAAAAAGAAACCTACTATTGTACGGAACAGTGTGGAAAGATTTCTAGTTTAAGAATATTGTCAATAAAGGAACAAAAGATTGCATGCTAAAAACAGACGAAAATATAGAATGTATATTT]


>consensus_8301#4 CCGCGGACGCGTGGGCGGACGCGTGGGTGGAAAAATAGTTCGGAAAACAATTCCAAATCA GTTTGCAAAAGCCGAGAACAGCAGATGATGCGACTGCTTAGTGCGTTAATATTAAATCAT CCAAATCCGTTCCTATCGATAAGCAGCAAAGACTAGAGGATAGATAAGGCGAAAAGGTTT ATTTTGAAGAGCATCCCTGCTTTTCTTCCCATTTGGTTTTATTGACTGTGAAATGCTCGT CACAATGATCACAATGATCGCAGCGTAGTGCCGCAGGTAAAGTTGGGCCATTTGTTAACA CTTAAGACAGTGTGATTCGTTTTGCCAGTGTAACGGAACGGGAAAGTAAATGGGCCAAAA AAAAAGAAACCTACTATTGTACGGAACAGTGTGGAAAGATTTCTAGTTTAAGAATATTGT CAATAAAGGAACAAAAGATTGCATGCTAAAAACAGACGAAAATATAGAATGTATATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8301#2      ------------------------------------------------------------
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      ------------------------------------------------------------
consensus_8301#0      CGACCCACGCGTCCGAGCAATTCTCCCAAAGTGATAGATAACGTACGTTGCGCGTGTGAC 60
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      ------------------------------------------------------------
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      ------------------------------------------------------------
consensus_8301#0      AAGCGAGAACCTAGAAGCTACGGGTTAGACAAGTAAGCCTACCGATATATATATACCTAT 120
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      ------------------------------------------------------------
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      ------------------------------------------------------------
consensus_8301#0      AGCTCCTCCATCGGTGAAACGTGAATCGTGAAAGGGACCCATCTCGTGGGGCCGTTGGCG 180
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      ------------------------------------------------------------
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      ------------------------------------------------------------
consensus_8301#0      AGTCGCCCTATGGCCACACACTAACTTTGACAAGAAGAAGCCACCTGATAAAAGACAAAG 240
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      ------------------------------------------------------------
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      ------------------------------CAGAATCCCCCGAGGTTTATGCTGTAAGGA 30
consensus_8301#0      CAACCAAACGTAGCAGGAAAAGGGACCAGTCACTCATATTTACACTTTATGCTGTAAGGA 300
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      ------------------------------------------------------------
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      TCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTAT 90
consensus_8301#0      TCAATTCATGCCCTGTGACCTCCTGAATGATTGCGTCATTTATTGTCGTGCTGTTTCTAT 360
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      ----TCGCCCGAGGTTNACTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGT 56
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      GTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTACCGTCGCGCGT 150
consensus_8301#0      GTTAGGTCTTAAGAGCACTTTTCGCGATGCATATTTCAGACATTCTCTATCGTTGCGCGT 420
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      ACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTT 116
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      ACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTT 210
consensus_8301#0      ACCGCGATCGCACATCTTCTAATCGTAGTTGTATGATTATACAAAGAGTGTTGTGACGTT 480
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      GATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTA 176
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      GATACGATTTGAGGGAAGTTTTTTTTT-CTTTGCTTGGCTGATTGGAGAATGTAGCTCTA 269
consensus_8301#0      GATACGATTTGAGGGAGTTTTTTTTTTTCTTTGCTTGGCTGGCTGGAGAATGTAGCTCTA 540
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      CACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGA 236
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      CACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATGTTTAAGA 329
consensus_8301#0      CACATACATTAGTAGCACTTTAATGAAACAAATCTCGTCCCTTATAATAGATTTTTAAGA 600
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      TGAAAAAA---TTAAAGTGGAACAAAACTATTGTCGAGCTTGCTGTTGGGTTTGCTGTTN 293
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      TGAAAAAAAATTAAAAGTGGAACAAAACTATTGTCGAGCTTGTG--TGGGTTTGCTGTTT 387
consensus_8301#0      TGAAAAAA---TTAAAGTGGAACAAAACTATTGTCGAGCTTGTTGTTGGGTTTGCTGTTT 657
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      TTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTGCGTATGTTTTTGTG------CT 347
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      TNCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTACGTGTGTGTATTCTGTATGCTT 447
consensus_8301#0      TTCTATTGAAAATAGCAACCATCACTCTCGGCTGTGTACGTGTGTGTATTTGTAT--GCT 715
consensus_8301#3      ------------------------------------------------------------
                                                                                  

consensus_8301#2      TGTCATCAAGCAAAGCAAACACACT-GAAAAATATACTTCAAACCAGATGGATTGTGTTA 406
consensus_8301#4      ------------------------------------------------------------
consensus_8301#1      CTTCAGCAAGCAAAGCAAACACACTTGANACATAAACATCAAACCACGCATAACATNTGT 507
consensus_8301#0      TTTCAGCAAGCAAAGCAAACACACTTGAAA-ATAAACATCAAACCAGATAAATTGTAATT 774
consensus_8301#3      --------------------------------------------TATGCTCTATGCAAGA 16
                                                                                  

consensus_8301#2      GTT--------------GGAAAACAAAAATATTGGAGCAAGATTTGGT-TGGAA-AAATC 450
consensus_8301#4      --------------------CCGCGGACGCGTGGGCGGACG-CGTGGG-TGGAA-AAATA 37
consensus_8301#1      NNCCTCTGTTCAGTCTGGAAAACCAAAAATATTGGAGCAGATTCTGGTCTGGAACAAATA 567
consensus_8301#0      GTTAGTT----------GGAAAACAAAAATATTGGAGCAAGATTTGGT-TGGAA-AAATA 822
consensus_8301#3      ATTGCAGCNAGGNTAAGCGAGAACTAGAAGCTACGCGGTTAGACTAAG-TAANCCTACCG 75
                                             *       *  * *       *    *      *   

consensus_8301#2      GTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATG-ATGCGACTG 509
consensus_8301#4      GTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATG-ATGCGACTG 96
consensus_8301#1      GTTCGGAAAACAATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATGCATGCGACTG 627
consensus_8301#0      GTTCGGAAAACNATTCCAAATCAGTTTGCAAAAGCCGAGAACAGCAGATG-ATGCGACTG 881
consensus_8301#3      ATATATATACCAATAGCTCCTCCATCGGTGAAA--CGTGAATCGTGAAAGGGACCCATCC 133
                       *    * * * **  *   **  *  *  ***  ** ***  *   * *    * *   

consensus_8301#2      CTTAGTGC-GTTAATATTAAATCATCCAAATCCGTTCC-TATCGGTAAGCAGCAAAGACT 567
consensus_8301#4      CTTAGTGC-GTTAATATTAAATCATCCAAATCCGTTCC-TATCGATAAGCAGCAAAGACT 154
consensus_8301#1      CTTAGTGCCGTTAATATTAA-TCATCCAAATCCGTTCC-TATCGATAAGCAGCAAAGACT 685
consensus_8301#0      CTTAGTGC-GTTAATATTAAATCATCCAAATCCGTTCC-TATCGGTAAGCAGCAAAGACT 939
consensus_8301#3      CGTGGGGCCGTTGGGAGTCGCCCTATGGCACACACTAAATTTTGACAAGAAAGAAAGCCA 193
                      * * * ** ***   * *    *      *  *  *   * * *  *** *  **** * 

consensus_8301#2      AGAGG-ATAGATAAGGCGAA-ACA---GGT-TTAT--TTTGAAGA--GCATCCCTG---- 613
consensus_8301#4      AGAGG-ATAGATAAGGCGAA-A-A---GGT-TTAT--TTTGAAGA--GCATCCCTG---- 199
consensus_8301#1      AGAGGCATAGATAAGGCNNA-AAACAGGGTANTATCATCTGAAGNAGGCATCCCTG---- 740
consensus_8301#0      AGAGG-ATAGATAAGGCGAA-A-A---GGT--TAT--TTTGAAGA--GCATCCCTG---- 983
consensus_8301#3      CTGATAAAAGACAAAGCAAACAAACGTAGCAGGAAAAACGGGACCAGTCACTCATATTTT 253
                            * *** ** **  * * *    *    *      * *     **  * *     

consensus_8301#2      ---TTTTTCTTNCCATTTGGTTTT-ATTGAC----TATGAAA-TGCTCGTTA--CAAT-- 660
consensus_8301#4      ---CTTTTCTTCCCATTTGGTTTT-ATTGAC----TGTGAAA-TGCTCGTCA--CAATGA 248
consensus_8301#1      ---GTTTCTTCCCCATGAGGTTCCCATTGACCTGGTGCAACA-TGCTCGTCAAACAATG- 795
consensus_8301#0      ---TTTTTCTTCCCATTTGGTTT--ATTGAC----TATGAAAATGCTCGNTA--CATCA- 1031
consensus_8301#3      ACACTTTTATGCCTGTAAGCGATCAATTCATGCCCTGTGAN----CTCCTGAATTGATTG 309
                          ***  *  *  *  *      *** *     *   *     ***   *        

consensus_8301#2      -CACAATGATCGCAGCGTANTGCCGCANGTAAAGTTGGGCCATTTTGTTAACACTTAAGA 719
consensus_8301#4      TCACAATGATCGCAGCGTAGTGCCGCAGGTAAAGTTGGGCCATTT-GTTAACACTTAAGA 307
consensus_8301#1      ----ANTCACCAAATGGANTCGCCAAGCCNGTAAGTGCCGCAGGNTACACAGCTTTGGGG 851
consensus_8301#0      ---CAATGATCNCAGCGTAGTGCCCCAG-------------------------------- 1056
consensus_8301#3      GGGTCACTTTTATTGTCGTGCNTGTTTTCTATGTTAAGGGTCTTAAGAAGACACGTTTTT 369
                                                                                  

consensus_8301#2      CAGTGNGATTCC---NTTTTGCCAATG-CAACGGAACGGGAAAGTANATGGGCCAAAAAA 775
consensus_8301#4      CAGTGTGATTC----GTTTTGCCAGTG-TAACGGAACGGGAAAGTAAATGGGCCAAAAAA 362
consensus_8301#1      CCCTCTTGTTNACCACTTTAACCAACA-CNGTGGTGNATTCCGTCGANCAGGCCANGNTG 910
consensus_8301#0      ------------------------------------------------------------
consensus_8301#3      CAGCAGAATTGNATAATTTTNCCAGNAACNATNTCTNCATAATACNGTCGGACGCAGATT 429
                                                                                  

consensus_8301#2      AG---GAAACCTACTATTGTACGGAACAGTGTGGAA------------------------ 808
consensus_8301#4      AAA--GAAACCTACTATTGTACGGAACAGTGTGGAAAGATTTCTAGTTTAAGAATATTGT 420
consensus_8301#1      TA---ANCGNNAACGGGCG-ACANNGTAATGGCGGCCAAACACACAAGAAACCTAACTAT 966
consensus_8301#0      ------------------------------------------------------------
consensus_8301#3      AGCTCGNAGAGTACGGGNGAATTNTTTTCT-TACATACTGTACGAGTTGTATTGAGTTAA 488
                                                                                  

consensus_8301#2      ------------------------------------------------------------
consensus_8301#4      CAATAAAGGAACAAAAGA-TTGCATGCTAAAAACAGACGAAAATATAGAATGTATATTT- 478
consensus_8301#1      TNGTACCGGAACACAGCT-GTGCC------------------------------------ 989
consensus_8301#0      ------------------------------------------------------------
consensus_8301#3      TGATCAAGGAAGNTGTCTCGGGNACGCTCGTAGTACTGAATTNGGGAGGGGGAATGTNTT 548
                                                                                  

consensus_8301#2      -
consensus_8301#4      -
consensus_8301#1      -
consensus_8301#0      -
consensus_8301#3      T 549
                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)