cluster # 8304

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Anopheles gambiae
cluster # 8304 cluster # 8304 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8304#0 length = 428 sequences # 2
consensus_8304#1 length = 402 sequences # 3

consensus_8304#2 length = 387 sequences # 2
consensus_8304#3 length = 293 sequences # 3

consensusID : consensus_8304#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 428
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGGAGAAGAGATAACAGCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTTTATTCGTCAGGCCCTTAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGG-AAAAACGCATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACCAACTAC]

[+] EMBL BM607694             [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGGAGAAGAGATAACAGCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTTTATTCGTCAGGCCCTTAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGG AAAAACGCATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACCAACTAC]
[+] EMBL BM588361             [                        ccGCTTTTGTGGAGAAGAGATAACAGCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCTCGCCGCGATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTTTATTCGTCAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGTTTGGAAAAAACACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACC      ]




>consensus_8304#0
CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGGAGAAGAGATAACAGCGCCGCAGCG
TGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGA
ACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCG
CTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACC
AAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTT
TATTCGTCAGGCCCTTAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAA
AACGCATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGA
CCAACTAC

consensusID : consensus_8304#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 402
fasta sequence

                              [CCGCTTTTGTGGAGAAGAGATAACA-GCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAAAAAACACATCTTTAGTACAGATAGAGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACCAACTACGAAAAAAAAAA]

[+] EMBL BM634062             [CCGCTTTTGTGGAGAAGAGATAACA GCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAAAAAACACATCTTTAGTACAGATAGAGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACCAACTACGAAAAAAAAAA]
[+] EMBL BM588310             [   CTTTTGTGGAGAAGAGATAACACGCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGC                                                                                                                                                                                                                                                                            ]
[+] EMBL BM587682             [          ccgGAAGAGATAACA GCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAAAAAACACATCTTTAGTACAGATAGAGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACCAACT             ]




>consensus_8304#1
CCGCTTTTGTGGAGAAGAGATAACAGCGCCGCAGCGTGAGCAAAATCCACCGTTGAAAAC
TCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAAC
TATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAA
GCTGCCCGCCGCGATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAA
AATGAAAAATGATTTTTCTTATCATTTTGAGGCCCTAAGCGAATAAGCTAAACGACAGTT
CATTCTGGTCCAGATTGGAAAAAAACACATCTTTAGTACAGATAGAGGGCAAAATAAATT
ATGTGAAATCATTACGTTGGTGACCAACTACGAAAAAAAAAA

consensusID : consensus_8304#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 387
fasta sequence

                              [CCGCGGACGCGTGGGGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCTCGCCGCGATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTTTATTCGTCAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGTTTGGAAAAAACACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACC]

[+] EMBL BM576601             [CCGCGGACGCGTGGGGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCTCGCCGCGATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTTTATTCGTCAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGTTTGGAAAAAACACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACC]
[-] EMBL CNS08NF5             [                                                                          TGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAAAATTGCCGCCCGGCTGCTCCGTAAAGGGTTCAAGCCGGAGCTGC                                                                                                                                                                                                                                   ]




>consensus_8304#2
CCGCGGACGCGTGGGGCCGCAGCGTGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGA
AATATCAAAATGGCTGCCTGGAGAACTGCCGGACTGAACTACATCAACTATTCCAACATT
GCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCTCGCCGC
GATGATTCGCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGA
TTTTTCTTATCATTTTGGTTAGTTTATTCGTCAGGCCCTAAGCGAATAAGCTAAACGACA
GTTCATTCTGGTCCAGTTTGGAAAAAACACATCTTTAGTACAGATAGTGGGCAAAATAAA
TTATGTGAAATCATTACGTTGGTGACC

consensusID : consensus_8304#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 293
fasta sequence

                              [ACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAAAAACACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACCAACTAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCA]

[+] EMBL CNS08X64             [ACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAAAAACACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGTGACCAACTAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCA]
[+] EMBL CNS08NF4             [ACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAA                                                                                                                                                            ]
[-] EMBL CNS08X65             [                                                   GCTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCAAATCAAGTTCACCAAATGGCAGGGTGGCAAGCCGGAAAAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTG                                                                                                            ]




>consensus_8304#3
ACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCGCTCAAGCC
GGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACCAAATGGCA
GGGTGGCAAGCCGGAAAAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCA
GATTGGAAAAAACACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATT
ACGTTGGTGACCAACTAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8304#0      CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGGAGAAGAGATAACAGCGCCGCAGCG 60
consensus_8304#2      ------------------------------CCGCGGACGCGTG------GGGCCGCAGCG 24
consensus_8304#1      ------------------------CCGCTTTTGTGGAGAAGAGATAACAGCGCCGCAGCG 36
consensus_8304#3      ------------------------------------------------------------
                                                                                  

consensus_8304#0      TGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGA 120
consensus_8304#2      TGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGA 84
consensus_8304#1      TGAGCAAAATCCACCGTTGAAAACTCGCTACAGAGAAATATCAAAATGGCTGCCTGGAGA 96
consensus_8304#3      ------------------------------------------------------------
                                                                                  

consensus_8304#0      ACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCG 180
consensus_8304#2      ACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCG 144
consensus_8304#1      ACTGCCGGACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCG 156
consensus_8304#3      --------ACTGAACTACATCAACTATTCCAACATTGCCGCCCGGCTGCTCCGTAAAGCG 52
                              ****************************************************

consensus_8304#0      CTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACC 240
consensus_8304#2      CTCAAGCCGGAGCTGCGAGTTCAAGCTGCTCGCCGCGATGATTCGCACATCAAGTTCACC 204
consensus_8304#1      CTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCGCACATCAAGTTCACC 216
consensus_8304#3      CTCAAGCCGGAGCTGCGAGTTCAAGCTGCCCGCCGCGATGATTCCCACATCAAGTTCACC 112
                      ***************************** ************** ***************

consensus_8304#0      AAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTT 300
consensus_8304#2      AAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTGGTTAGTT 264
consensus_8304#1      AAATGGCAGGGTGGCAAGCCGGAAAATGAAAAATGATTTTTCTTATCATTTTG------- 269
consensus_8304#3      AAATGGCAGGGTGGCAAGCCGGAAAA--------------------------G------- 139
                      **************************                          *       

consensus_8304#0      TATTCGTCAGGCCCTTAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAA 360
consensus_8304#2      TATTCGTCAGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGTTTGGAAA 324
consensus_8304#1      --------AGGCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAA 321
consensus_8304#3      ----------GCCCTAAGCGAATAAGCTAAACGACAGTTCATTCTGGTCCAGATTGGAAA 189
                                ***** ************************************ *******

consensus_8304#0      AA--CGCATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGT 418
consensus_8304#2      AAA-CACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGT 383
consensus_8304#1      AAAACACATCTTTAGTACAGATAGAGGGCAAAATAAATTATGTGAAATCATTACGTTGGT 381
consensus_8304#3      AAA-CACATCTTTAGTACAGATAGTGGGCAAAATAAATTATGTGAAATCATTACGTTGGT 248
                      **  * ****************** ***********************************

consensus_8304#0      GACCAACTAC----------------------------------- 428
consensus_8304#2      GACC----------------------------------------- 387
consensus_8304#1      GACCAACTACGAAAAAAAAAA------------------------ 402
consensus_8304#3      GACCAACTAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCA 293
                      ****