These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1147 fasta sequence [ATTTTATTTAACTCTCCTGCCGCACATTCCTTCGCCGCCGGCCAGCACGTAACCCATCGACACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCACTGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCTCCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCGTGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAA-TCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC-GGATCCGATTTGGACATCTTTTTTGACGGGT-CGCGCAACGACTTCAGCC-GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT-GTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT-CCTTCAT-GTTGG-CCGACTT-T-TCCTTGTA-CTGGGGAAGATGGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGT-TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGGCTGTTCGTACTCTTCAGCAGAAAGGGTAAAACACGTTTAGCTAACCTCGTGGCGATTCTGCT] [+] EMBL CNS09ME6 [ATTTTATTTAACTCTCCTGCCGCACATTCCTTCGCCGCCGGCCAGCACGTAACCCATCGACACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCACTGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCTCCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCGTGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAACTCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTTGACGGGT CGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTT ] [+] EMBL CNS09BJW [ CACATTCCTTCGCCGCCGGCCAGCACGTAATTTTTCGACACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCACTGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCTCCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCGTGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGACCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAA TCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTTGACGGGTGCGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTG CATTGTCGTCAGA AGCCCAGAATCCAGGACAGT TCG ] [-] EMBL CNS08N5N [ TATCTCCTCCACCGGTTTGCCACTGACCAGCGAGTGGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACCGGAAA TCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATTTTTTTCGACGGAT CGCGCAACGACTTCAGTC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAACGATTGTGCCAGCTGCTGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTTGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGAACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGGTGGGTAAGGCGTGCCATCGTCGTGAGACAGCCCAAAATCCAGGACAGT TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGG CCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAACGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGTAGTTCAAATCAACAATACAGTAGTTGACGTCCTCTCCGTCTTCCTGCAGCTCCACCCAGCTCTTCACCG ] [-] EMBL BX620696 [ CACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTNTTCGGGTCCGGGATCCGATTTGGACATCTTTTTCGACGGGT CGCGCAACGACTTCAGCCGGGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTTNGTTGTTGAACGCGCGCGCCAGTGATTGGGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTATGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCACCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGGC ] [-] EMBL CNS09BJV [ CACCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTTGACGGGT CGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATTGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGGACGGCCGACTGGAGGAAGAGGGTGG CCGTGCCGGATCGATACCACACGCCAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGGGCGaaaaaa ] [-] EMBL BX623873 [ CCACGTCGGCCGGGTCGATCAGCATGATGCAGCTCTTCGGGTCC GGATCCGATTTGGACATCTTTTTCGACGGGT CGCGCAACGACTTCAGCC GGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACTT GTTGTTGAACGCGCGCGCCAGTGATTGGGCCAGCTGCAGCTGCTGGATTTGATCCTCCCCGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTATGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCACCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCG ] [-] EMBL BX616194 [ ATGTCGGCCGCCTGCAGGACCGGGTAGAGGTACAGGCCGAGCGGAATTT CCTTCAT GTTGG CCGACTT T TCCTTGTA CTGGGGAAGATGGGTCAGGCGTGCCATTGTCGTCAGACAGCCCAGAATCCAGGACAGT TCGGCATGCTGCGGGACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCACACGCCAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGGGCGGGCTTCGCTTCTGAGGAAAGGAAGCGATTTTGCTGTCGTAGGCTGTTCGTACT ] [-] EMBL AL696758 [ GAATTTGCCTTCATGGTTGGCCCGACTTGTGTCCTTGTACCTGGGGAAGACTGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGTGTCGGCATGCTGCGGAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCGTTGCCGTCATTTGCAGCGTGTTATGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCACCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTA GCCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCTAACCTCGTGGCGATTCTGCT] [-] EMBL CNS09ME5 [ aCACGCCAGCAGCGTTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGGAGTGCAAATCAACAATACAGTAGGTGACGTCCTCTCCGGCTTCCTGCAGCTCCACCCAGCGCTTCACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGT ] consensusID : consensus_8336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [GGCGTTCAGGGACCCAAGGCCTCGCCAAAGGAAAAATTGCGCCCAAAGGGAACCCAAAGGGTTNTTTCCGGGGGCCAAATTTGCGCGCCTTCAGCGCCCGGGGAANACCCGGGCCCCNGGAACCTTGGGGAAAGGGGAAAAGGAACGGGGTTTGGGGCCCCCCCGGTTTGCCACCGGGGGAATTCCGGAAATTACCCCGGCCAAACCGGCCTTAAGGCCAAGGCCGTTTTGCCCCGGTTCCAATTTTGCCCAAGGCCAGTTGGTTTAATGGAACCGTTAAACGGTGTTCCGGGTTCCCGCCGGGGATGGGTCCAATGGAAGTGCCAAAAATCGACAATACAGTAGGTGACGTCCTCACCCGGCTTTCCTGCAGCTCCACCCAGCGCTTCAACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGCCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCGCTAACCTCGTGGCGATTCTG] [-] EMBL AL696553 [GGCGTTCAGGGACCCAAGGCCTCGCCAAAGGAAAAATTGCGCCCAAAGGGAACCCAAAGGGTTNTTTCCGGGGGCCAAATTTGCGCGCCTTCAGCGCCCGGGGAANACCCGGGCCCCNGGAACCTTGGGGAAAGGGGAAAAGGAACGGGGTTTGGGGCCCCCCCGGTTTGCCACCGGGGGAATTCCGGAAATTACCCCGGCCAAACCGGCCTTAAGGCCAAGGCCGTTTTGCCCCGGTTCCAATTTTGCCCAAGGCCAGTTGGTTTAATGGAACCGTTAAACGGTGTTCCGGGTTCCCGCCGGGGATGGGTCCAATGGAAGTGCCAAAAATCGACAATACAGTAGGTGACGTCCTCACCCGGCTTTCCTGCAGCTCCACCCAGCGCTTCAACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACGCCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTTTGCTGTCGTAGCCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCGCTAACCTCGTGGCGATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8336#0 ATTTTATTTAACTCTCCTGCCGCACATTCCTTCGCCGCCGGCCAGCACGTAACCCATCGA 60 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 CACCGATCTTCTCCTTCACCTCGTCGATCGTCTGCTCCGCTATCGCCCGCGCCCGCTCAC 120 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 TGCCCTCCTCGATAACGTCGGCCAAATAGCCAACATCCCGCGTGTACCGCTCCATCCGCT 180 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 CCCGGATCGGCCGCAGATGCTCAATCAACGCTTCCGCCACCAGCAGCTTGTACTGGCCCG 240 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 TGTTTTTCCCCACCGCCTCCCGGCATATCTCCTCCACCGGTTTGCCACTGACCAGCGAGT 300 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 GGATCGTGATCAGATTCGACACGCCGGGCCGCTCTTTCGCATCGAACGTAACCTCCGACC 360 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 GGAAATCCGTCACCGACTTCTTCACCTTCTCCAGCACCACGTCGGCCGGGTCGATCAGCA 420 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 TGATGCAGCTCTTCGGGTCCGGATCCGATTTGGACATCTTTTTTGACGGGTCGCGCAACG 480 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 ACTTCAGCCGGCTGCCGTCGTTCACGAGCGTCTCGCAGAACGGGAACGTTCGGCCGTACT 540 consensus_8336#1 ------------------------------------------------------------ consensus_8336#0 TGTTGTTGAACGCGCGCGCCAACGATTGAGCCAGCTGCAGCTGCTGGATTTGATCCTCCC 600 consensus_8336#1 ------------GGCGTTCAGGGACCCAAGGCCTCGCCAAAGGAAAAATTGCGCCCAAAG 48 *** * ** * * ** * *** ** consensus_8336#0 CGACCGGCACGTGGGTCGCTTTGTACAGCATAATGTCGGCCGCCTGCAGGACCGGGTAGA 660 consensus_8336#1 GGAAC--CCAAAGGGTTNTTTCCGGGGGCCAAAT-TTGCGCGCCTTCAGCGCCCGGGGAA 105 ** * * **** ** ** *** * * ***** *** ** ** * consensus_8336#0 GGTACAGGCCGAGCGGAATTTCCTTCATGTTGGCCGACTTTTCCTTGTACTGGGGAAGAT 720 consensus_8336#1 NACCCGGGCCCCNGGAA----CCTTGGGGAAAGGGGA--------------AAAGGAACG 147 * **** * * **** * * ** * * consensus_8336#0 GGGTCAGGCGTGCCATCGTCGTCAGACAGCCCAGAATCCAGGACAGTTCGGCATGCTGCG 780 consensus_8336#1 GGGTTTGGGGCCCCCCCG--GTTTGCCACCGGGGGAATTCCGGAAATTACCCCGGC--CA 203 **** ** * ** ** ** * ** * * * * * ** * ** * consensus_8336#0 GAACGGCCGACTGGAGGAAGAGGGTGGCCCGTGCCGGATCGATACCGCACGCTAGCAGCG 840 consensus_8336#1 AACCGGCC---TTAAGGCCAAGGCCGTTTTGCCCCGGTTCCA-ATTTTGCCCAAGGCCAG 259 * ***** * *** *** * * **** ** * * * * ** * consensus_8336#0 TTGCCGTCATTTGCAGCGTGTTGTGACGTAACGTGTCGGGGTCCGGCGGGATGGTCATGG 900 consensus_8336#1 TTGGT-TTAATGGAACCGTTAAACGGTGTTCCGGGTTCCCGCCGGGGATGGGTCCAATGG 318 *** * * * * * *** * ** ** ** * * ** * **** consensus_8336#0 A-GTGC---AAATCAACAATACAGTAGGTGACGTCCTC-TCCGGCTT-CCTGCAGCTCCA 954 consensus_8336#1 AAGTGCCAAAAATCGACAATACAGTAGGTGACGTCCTCACCCGGCTTTCCTGCAGCTCCA 378 * **** ***** *********************** ******* ************ consensus_8336#0 CCCAGCGCTTCA-CCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACG 1013 consensus_8336#1 CCCAGCGCTTCAACCGCACCGAGATAGTTGCCAATGTGCAGCGCACCGGTCGGCTGCACG 438 ************ *********************************************** consensus_8336#0 CCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTT 1073 consensus_8336#1 CCGGAAAACACCTTCCGTGGCCATGGCGCGGGCTTCGCTTCTGCGGAAAGGAAGCGATTT 498 ************************************************************ consensus_8336#0 TGCTGTCGTAGGCTGTTCGTACTCTTCAGCAGAAAGGGTAAAACACGTTTAGC--TAACC 1131 consensus_8336#1 TGCTGTCGTAG-CCGTTTGTATTCTTCAGCAGAAAGGGTAAAACACGTTTAGCGCTAACC 557 *********** * *** *** ******************************* ***** consensus_8336#0 TCGTGGCGATTCTGCT 1147 consensus_8336#1 TCGTGGCGATTCTG-- 571 ************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||