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Anopheles gambiae
cluster # 8345 cluster # 8345       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8345#0 length = 939 sequences # 3  
consensus_8345#1 length = 883 sequences # 4  
consensus_8345#2 length = 564 sequences # 1  
consensus_8345#3 length = 434 sequences # 1  
consensus_8345#4 length = 280 sequences # 1  

consensusID : consensus_8345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 939
fasta sequence
                              [TAACTCGGTGTTTTGCTAGCATGTGGATTGTTTGATTCGAAACGTTATAAAATGCCACAGCTGCGTGAGTGTAACGGTTACAGTGTACTCGGGATTCGGTTAAGTTGAACTAGTGTTTA-GCAAAATGGCCCTTCAATGGCATTGGACATTCGTTGCGATCGTGAGCTGCCTAGTCGGCGTACTGCAAGCCCAAACTGACTACTGTGCCAATAGCAACTGCCGGAACGGTCGACCAAACGTTGGTTGCAATCCCCCCGCCAGTCCGGGCGGACCGGCCTGCGCTGGTCTGAATCCAGAGGTTAAAACGTTCAGCCCTGAAGAACAAACGTTGATCCTTTCCGAGCAC-AAT-AAGCGCCGATCGCAACTGGCGCAGGGTGAACTGAAGCCGTTCCAACCGGCCGTTCGTATGCCCACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGTACGTACCAACACGATAGCTGCCGTAACACGCCCGTCTTTGCGTGGGCTGGACAGAACCTTGCGCTGTCGCAATCTTCCGGCATGAACAAAACGGTATCGGAGGTTATAAGCAGCAGCATCGCCTCCTGG-TGGAGTGAGCACAACGTTACTAGGGAAGAACAACTCAACACCTATCCATCGAGCTATTCTGGACCTGCCATTGGACATTTCACGCAGATGGCCAGTGATCAGAGCGACAAAATAGGATGTGCCATGCAGAAATGGGTGAGTGACGACTGGCTGACGTACTACTTTGTGTGTAACTATGGCGTCACAAACATTGCTGACCGTCCAGTCTACAAAGCTGGAGCAGTTGCTTCCAAAATGTACTACCGGGCGCAATCCAACGCTGCCTGGGCTATGTTCAGAATCGGAAACTATCAACCCTGTTCCAAACGAACCTAAAGAACCAAAATAAAGCTATTCGATGA]

[+] EMBL CNS08XAD             [TAACTCGGTGTTTTGCTAGCATGTGGATTGTTTGATTCGAAACGTTATAAAATGCCACAGCTGCGTGAGTGTAACGGTTACAGTGTACTCGGGATTCGGTTAAGTTGAACTAGTGTTTA GCAAAATGGCCCTTCAATGGCATTGGACATTCGTTGCGATCGTGAGCTGCCTAGTCGGCGTACTGCAAGCCCAAACTGACTACTGTGCCAATAGCAACTGCCGGAAC GTCGACCAAACGTTGGTTGCAATCCCCCCGCCAGTCCGGGCGGACCGGCCTGCGCTGGTCTGAATCCAGAGGTTAAAACGTTCAGCCCTGAAGAACAAACGTTGATTTTTTCCGAGCAC AAT AAGCGCCGATCGCAACTGGCGCAGGGTGAACTGAAGCCGTTCCAACCGGCCGTTCGTATGCCCACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGTACGTACCAACACGATAGCTGCCGTAACACGCCCGTCTTTGCGTGGGCTGGACAGAACCTTGCGCTGTCGCAATCTTCCGGCATGAACAAAACGGTATCGGAGGTTATAAGCAGCAGCATCGCCTCCTGGTTGGAGTGAGCACAACGTTACTAGGGAAGAACAACTCAACACCTATCCATCGAGCTATTCTGGACCTGCCATTGGACATTTCACGCAGATGGCCAGTGATCAGAGCGACAAAATAGGATGTGCCATGCAGAAATGGGTGTTTTACGACTGGCTGACGTACTACTTTGTGTGTAACTATGGCGTCACAAACATTGCTGACCGTCCAGTCTACAAAGCTGGAGCAGTTGCTTCCAAAATGTACTACCGGGCGCAATCCAACGCTGCCTGGGCTATGTTCAGAATCGGAAACTATCAAC                                              ]
[+] EMBL BM575851             [                                                                                             ccgCGGTTAAGTTGAACTAGTGTTTAGGAAAAATGGCCCATCAATGGCATTGGACATTTGTTATGATCGTGAGCTGTCTAGTCGACGTACTGCAAGCTCAAACTGACTACTGTGCCAATAGCAACTGCCGGAACGGTCGACCAAACGTTGGTTGCAATCCCCCCGCCAGTCCGGGCGGACCGGCCTGCGCTGGTCTGAATCCAGAGGTTAAAACGTTCAGCCCTGAAGAACAAACGTTGATCCTTTCCGAGCAC AAT AAGCGCCGATCGCAACTGGCGCAGGGTGAACTGAAACCGTTCCAACCAGCCGTTCGTATGCCCACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGCAATAATGCACGCAGCTGTACGTACCAACACGATAGCTGCCGCAACACGCCCGTCTTTGCGTGGGCCGGACAGAACCTTGCGCTGTCGCAATCTTCCGGCATGAACAAAACGGTATCGGAGGTTATAAGCAGCAGCATCGCGTCCTGG TGGAGTGAGCATAACGTTACTAGGGAAGAACAACTCAACACCTATCCATCGAGCTATTCTGGACCTGCCATTGGACATTTCACGCAGATGGCCAGTGATCAGAGCGACAAAATTGGATGTGCCATGCAGAATTGGGTGAGTGACAACTGGCAGACGTACTACTTcg                                                                                                                                                                               ]
[-] EMBL CNS08XAE             [                                                                                                                                  CCTTAAATGGCATTGGACATTCGTTGCGATCGTGAGCTGCCTAGTCGGCGTACTGCAAGCCCAAAAAAAATACTGTGCCAATAGCAACTGCCGGAACGGTCGACCAAACGTTGGTTGCAATCCCCCCGCCAGTCCGGGCGGACCGGCCTGCGCTGGTCTGAATCCAGAGGTTAAAACGTTCAGCCCTGAAGAACAAACGTTGATCCTTTCCGAGCACAAATAAAGCGCCGATCGCAACTGGCGCAGGGTGAACTGAAGCCGTTCCAACCGGCCGTTCGTATGCCCACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGTACGTACCAACACGATAGCTGCCGTAAAACGCCCGTCTTTGCGTGGGCTGGACAGAACCTTGCG TGTCGCAATCTTCCGGCATGAACAAAACGGTATCGGAGGTTATAAGCAGCAGCATCGCCTCCAGG TGGAGTGAGCACAACGTTACTAGGGAAGAACAACTCAACACCTATCCATCGAGCTATTCTGGACCTGCCATTGGACATTTCACGCAGATGGCCAGTGATCAGAGCGACAAAATAGGATGTGCCATGCAGAAATGGGTGAGTGACGACTGGCTGACGTACTACTTTGTGTGTAACTATGGCGTCACAAACATTGCTGACCGTCCAGTCTACAAAGCTGGAGCAGTTGCTTCC AAATGTACTACCGGGCGCAATCCAACGCTGCCTGGGCTATGTTCAGAATCGGAAACTATCAACCCTGTTCCAAACGAACCTAAAGAACCAAAATAAAGCTATTCGATGA]


>consensus_8345#0 TAACTCGGTGTTTTGCTAGCATGTGGATTGTTTGATTCGAAACGTTATAAAATGCCACAG CTGCGTGAGTGTAACGGTTACAGTGTACTCGGGATTCGGTTAAGTTGAACTAGTGTTTAG CAAAATGGCCCTTCAATGGCATTGGACATTCGTTGCGATCGTGAGCTGCCTAGTCGGCGT ACTGCAAGCCCAAACTGACTACTGTGCCAATAGCAACTGCCGGAACGGTCGACCAAACGT TGGTTGCAATCCCCCCGCCAGTCCGGGCGGACCGGCCTGCGCTGGTCTGAATCCAGAGGT TAAAACGTTCAGCCCTGAAGAACAAACGTTGATCCTTTCCGAGCACAATAAGCGCCGATC GCAACTGGCGCAGGGTGAACTGAAGCCGTTCCAACCGGCCGTTCGTATGCCCACCCTTAC CTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGTACGTACCAACA CGATAGCTGCCGTAACACGCCCGTCTTTGCGTGGGCTGGACAGAACCTTGCGCTGTCGCA ATCTTCCGGCATGAACAAAACGGTATCGGAGGTTATAAGCAGCAGCATCGCCTCCTGGTG GAGTGAGCACAACGTTACTAGGGAAGAACAACTCAACACCTATCCATCGAGCTATTCTGG ACCTGCCATTGGACATTTCACGCAGATGGCCAGTGATCAGAGCGACAAAATAGGATGTGC CATGCAGAAATGGGTGAGTGACGACTGGCTGACGTACTACTTTGTGTGTAACTATGGCGT CACAAACATTGCTGACCGTCCAGTCTACAAAGCTGGAGCAGTTGCTTCCAAAATGTACTA CCGGGCGCAATCCAACGCTGCCTGGGCTATGTTCAGAATCGGAAACTATCAACCCTGTTC CAAACGAACCTAAAGAACCAAAATAAAGCTATTCGATGA



consensusID : consensus_8345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 883
fasta sequence
                              [GATCGGCCCAGGCNTATTTGGTTAAGGTGCACCAGTGTTTAGGGAAAATGGCATCATGGATATTCGTGGCGATTGTGAGCTGTCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTAGCACTAGCTACTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCT-CCAGGCAT-CCCGGGAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCCGTTCGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCGTTTATGCGTGGGCTGGA-CAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATA-TCGCAGCTAATAAGCACCAACATCGCTTCCTGGTGGAATGAGTACAGCTTTACTAAGCAGGAACAACTGAACTCCTATCCATCGAGCAATTCGGGACCTGCCATGGGACACTTCACACAGATGG-CAAGCGACCAGANCG-CAAGATTGGGTGTGCCATGCAGAATTGNGTGAGTGGCAACTGGCAGGACGTACTACTTCGCGTGTAACTATGCTGTCACCAACAATTATTGACCGNNCCAGTCTACAACAGCTGGACGCGGTNTGCTTATCGAAAATGTACTACGGGTCGCAATCCAACGNCTGCCTTGGACTGTGCTCAGTATCAGAAACTATCAAACCTGTTCCAAACTAATTTAATGCAGCAAAATAAAGCAATCCGATGATATGAAATGTCAAAAAAAAAA]

[+] EMBL AL697289             [GATCGGCCCAGGCNTATTTGGTTAAGGTGCACAGGTGTTTAGGGAAAATGGCATCATGGATATTCGTGGCGATTGTGAGCTGTCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTAGCACTAGCTACTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCTACCAGGCATACCCGGGAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCCGTTCGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCATTTATGCGTGGGCTGGACCAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATTCGCAGCTAATAAGCTCCAACATCGCTTCCTGGTGGAATGAGTACAGCTTTACTAAGCAGGAACAACTGAACTCCTATCCATCGAGCAATTCGGGACCTG CATTGGACATTTCACACAGATGGCCAAGTGACCAGANCG CAAGATTGGGTGTGCCATGCAGAATTGNGTGAGTGGCAACTGGCAGGACGTACTACTTCGCGTGTAACTATGCTGTCACCAACAATTATTGACCGNNCCAGTCTACAACAGCTGGACGCGGTNTGCTTATCGAAAATGTACTACGGGTCGCAATCCAACGNCTGCCTTGGACTG                                                                                           ]
[+] EMBL CF541522             [        actcggatTTTGGTTAAGGTACACCAGTGTTTAGGGAAAATGGCAACATGGATATTCGTGGCGATTGTGAGCTGCCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTACCACTAGCTATTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCT CCAGGCAT CCCAGGAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCCGTTCGTATGCCCACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACTCCCGTTTATGCGTGGGCTGGA CAAAATATTGCACTGGCGCAGTTTTCCCGCATGACCAATACGATA TCGCAGCTAATAAGCACCAACATCGCTTCCTGGTGGAATGAGTACAGCTTTACTAAGCAGGAACAACTGAACTTCTATCCATCGAGCAATNCGGGANCTGCCATGGGACACTTCACACAGATNG CNAGCGA                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM657514             [                       ccGGTGCACCAGTGTTTAGGGAAAATGGCATCATGGATATTCGTGGCAATTGTGAGCTGTCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTAGCACTAGCTACTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCT CCAGGCAT CCCGGGAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCTGTTCGTATGCCTACCCTTACCTGGGATGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGCCAGTACCAACACGATAGCTGCCGTAACACGCCCGTCTATGCGTGGGCTGGA CAAAATATTGCACTGGCGCAGTATTCTCGCATGACCAATACGATA TCGCAGCTAATAAGCACCAACATCGCTTCCTGGTGGAATGAGTACAGCTTTACTAAGCAGGAACAACTGAACTCTTATCC                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AF457549             [                                                        TGGATATTCGTGGCGATTGTGAGCTGCCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTACCACTAGCTATTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCT CCAGGCAT CCCAGGAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCCGTTCGTATGCCCACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAATAATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACTCCCGTTTATGCGTGGGCTGGA CAAAATATTGCACTGGCGCAGTTTTCCCGCATGACCAATACGATA TCGCAGCTAATAAGCACCAACATCGCTTCCTGGTGGAATGAGTACAGCTTTACTAAGCAGGAACAACTGAACTTCTATCCATCGAGCAATTCGGGACCTGCCATGGGACACTTCACACAGATGG CAAGCGACCAGACGGCCAAGATTGGGTGTGCAATGCAGAATTGGGTGAGTGGCACCTGGCA GACGTACTACTTCGTGTGTAACTATGCTGTCACCAAC ATTATTGACCG TCCAGTCTACAA AGCTGGA GCGGT TGCT  TCG AAATGTACTACGGGTCGCAATCCAACG CTACC TGGACTGTGCTCAGTATCAGAAACTATCAAACCTGTTCCAAACTAATTTAATGCAGCAAAATAAAGCAATCCGATGATATGAAATGTCAAAAAAAAAA]


>consensus_8345#1 GATCGGCCCAGGCNTATTTGGTTAAGGTGCACCAGTGTTTAGGGAAAATGGCATCATGGA TATTCGTGGCGATTGTGAGCTGTCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTA GCACTAGCTACTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCTCCAGGCATCCCGG GAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAA CGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAAC CGTTCCTGCCGGCCGTTCGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGG CTGGTAATAATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCGTTT ATGCGTGGGCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATAT CGCAGCTAATAAGCACCAACATCGCTTCCTGGTGGAATGAGTACAGCTTTACTAAGCAGG AACAACTGAACTCCTATCCATCGAGCAATTCGGGACCTGCCATGGGACACTTCACACAGA TGGCAAGCGACCAGANCGCAAGATTGGGTGTGCCATGCAGAATTGNGTGAGTGGCAACTG GCAGGACGTACTACTTCGCGTGTAACTATGCTGTCACCAACAATTATTGACCGNNCCAGT CTACAACAGCTGGACGCGGTNTGCTTATCGAAAATGTACTACGGGTCGCAATCCAACGNC TGCCTTGGACTGTGCTCAGTATCAGAAACTATCAAACCTGTTCCAAACTAATTTAATGCA GCAAAATAAAGCAATCCGATGATATGAAATGTCAAAAAAAAAA



consensusID : consensus_8345#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence
                              [AGAATCCCCCGAGGTTAATGTTTAGGGAAAATGGCATCATGGATATTCGTGGCGATTGTGAGCTGTCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTAGCACTAGCTACTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCTCCAGGCATCCCGGGAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCCGTTCGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTTAATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCATTTATGCGTGGGCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATCTGCCGTAACACGCCCATTTATGCGTGGGCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATCGCAGCTAATAAGCTCCAACATC]

[+] EMBL AL934511             [AGAATCCCCCGAGGTTAATGTTTAGGGAAAATGGCATCATGGATATTCGTGGCGATTGTGAGCTGTCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTAGCACTAGCTACTGCCGGAACGGTCGTCAGAACGTTGGTTGCAATCCTCCAGGCATCCCGGGAGGACCGGCCTGCGCTGGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAGCACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCCGTTCGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTTAATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCATTTATGCGTGGGCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATCTGCCGTAACACGCCCATTTATGCGTGGGCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATCGCAGCTAATAAGCTCCAACATC]


>consensus_8345#2 AGAATCCCCCGAGGTTAATGTTTAGGGAAAATGGCATCATGGATATTCGTGGCGATTGTG AGCTGTCTGGTAAGTGGACTGCAGGCTCAAATCAACTACTGTAGCACTAGCTACTGCCGG AACGGTCGTCAGAACGTTGGTTGCAATCCTCCAGGCATCCCGGGAGGACCGGCCTGCGCT GGGTTGAAACCCATGGTTATAACGATCAACTCTACGCTACAAACGTTGATCCTTTCCGAG CACAATACGCGCCGATCGCAACTAGCTCTAGGTCAACTGAAACCGTTCCTGCCGGCCGTT CGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTTAATGCACGCAG CTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCATTTATGCGTGGGCTGGACAAAA TATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATCTGCCGTAACACGCCCATT TATGCGTGGGCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATA TCGCAGCTAATAAGCTCCAACATC



consensusID : consensus_8345#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [AGATTGCCCGAGGTTTAGTTGAACTAGTGTTAGGAAAAATGGGCCATCAATGGCATTGGACATTTGTTATGATCGTGAGCTGTCTAATCGACGTACTGCAAGCTCAAACTGACTACTGTGCCAATAGCAACTGCGGAACGGTCGACAAACGTTGGTTGCAATCCCCCCGCAGTCCGGGCGGACGGCTGCGCTGGTCTGAATCCAGAGGTTAAAACGTTCAGCCCTGAAGAACAAACGTTTGATCCCTTTTCCGAGGCACAAGTAAAGCCGCCCGATTCGCCAAACCTTGTGGCTGGCCAAGGGGTTGAAACCTTGGAAAACCCCGGTTGTCCCAAAACGCCAAGGCCCGGTTTCACGGTTATTGCACCAACCCTTACTCTAGGGGACAGAGGAAACTTTGCGCAAACAGGCTGGCCAATTAATTGCACGCAAGC]

[+] EMBL AL696399             [AGATTGCCCGAGGTTTAGTTGAACTAGTGTTAGGAAAAATGGGCCATCAATGGCATTGGACATTTGTTATGATCGTGAGCTGTCTAATCGACGTACTGCAAGCTCAAACTGACTACTGTGCCAATAGCAACTGCGGAACGGTCGACAAACGTTGGTTGCAATCCCCCCGCAGTCCGGGCGGACGGCTGCGCTGGTCTGAATCCAGAGGTTAAAACGTTCAGCCCTGAAGAACAAACGTTTGATCCCTTTTCCGAGGCACAAGTAAAGCCGCCCGATTCGCCAAACCTTGTGGCTGGCCAAGGGGTTGAAACCTTGGAAAACCCCGGTTGTCCCAAAACGCCAAGGCCCGGTTTCACGGTTATTGCACCAACCCTTACTCTAGGGGACAGAGGAAACTTTGCGCAAACAGGCTGGCCAATTAATTGCACGCAAGC]


>consensus_8345#3 AGATTGCCCGAGGTTTAGTTGAACTAGTGTTAGGAAAAATGGGCCATCAATGGCATTGGA CATTTGTTATGATCGTGAGCTGTCTAATCGACGTACTGCAAGCTCAAACTGACTACTGTG CCAATAGCAACTGCGGAACGGTCGACAAACGTTGGTTGCAATCCCCCCGCAGTCCGGGCG GACGGCTGCGCTGGTCTGAATCCAGAGGTTAAAACGTTCAGCCCTGAAGAACAAACGTTT GATCCCTTTTCCGAGGCACAAGTAAAGCCGCCCGATTCGCCAAACCTTGTGGCTGGCCAA GGGGTTGAAACCTTGGAAAACCCCGGTTGTCCCAAAACGCCAAGGCCCGGTTTCACGGTT ATTGCACCAACCCTTACTCTAGGGGACAGAGGAAACTTTGCGCAAACAGGCTGGCCAATT AATTGCACGCAAGC



consensusID : consensus_8345#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence
                              [CCCAGTTAAAATGGCATCATGGATATTCGTGGCGATGTGAGCTGTCTGGTAGTGACTGGCAAGGCTCAAATCAACTACTGTAGCACTAGCTAAACTTTGGCCGGAACGGTCGTCAGAACGTTGGTTTNGGGCAAATCCTCCAGGCATCCCGGGAGGACGGCCTGCGCTGGGTTGAAACCCATGGGTTATAACGATCAACTCTACGCTACAAACGTTGAGTCCTTTCCGAGCACAAATACGCGCCGAATCGCAACTAGCCTTCTAGGGGGTTCAACTGGAA]

[+] EMBL AL930839             [CCCAGTTAAAATGGCATCATGGATATTCGTGGCGATGTGAGCTGTCTGGTAGTGACTGGCAAGGCTCAAATCAACTACTGTAGCACTAGCTAAACTTTGGCCGGAACGGTCGTCAGAACGTTGGTTTNGGGCAAATCCTCCAGGCATCCCGGGAGGACGGCCTGCGCTGGGTTGAAACCCATGGGTTATAACGATCAACTCTACGCTACAAACGTTGAGTCCTTTCCGAGCACAAATACGCGCCGAATCGCAACTAGCCTTCTAGGGGGTTCAACTGGAA]


>consensus_8345#4 CCCAGTTAAAATGGCATCATGGATATTCGTGGCGATGTGAGCTGTCTGGTAGTGACTGGC AAGGCTCAAATCAACTACTGTAGCACTAGCTAAACTTTGGCCGGAACGGTCGTCAGAACG TTGGTTTNGGGCAAATCCTCCAGGCATCCCGGGAGGACGGCCTGCGCTGGGTTGAAACCC ATGGGTTATAACGATCAACTCTACGCTACAAACGTTGAGTCCTTTCCGAGCACAAATACG CGCCGAATCGCAACTAGCCTTCTAGGGGGTTCAACTGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8345#2      ------------------------------------------------------------
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      ------------------------------------------------------------
consensus_8345#0      TAACTCGGTGTTTTGCTAGCATGTGGATTGTTTGATTCGAAACGTTATAAAATGCCACAG 60
consensus_8345#3      ------------------------------------------------------------
                                                                                  

consensus_8345#2      -------------------------------AGAATCCCCCGAGGT----TAATGTTTAG 25
consensus_8345#4      -------------------------------------------------------CCCAG 5
consensus_8345#1      ------------------GATCGGCCCAGGCNTATTTGGTTAAGGTGCACCAGTGTTTAG 42
consensus_8345#0      CTGCGTGAGTGTAACGGTTACAGTGTACTCGGGATTCGGTTAAGTTGAACTAGTGTTTAG 120
consensus_8345#3      --------------------------AGATTGCCCGAGGTTTAGTTGAACTAGTGTTAGG 34
                                                                                 *

consensus_8345#2      GGAAA----------ATGGCATCATGGATATTCGTGGCGATTGTGAGCTGTCTGGTAAGT 75
consensus_8345#4      TTAAA----------ATGGCATCATGGATATTCGTGGCGAT-GTGAGCTGTCTGGTA-GT 53
consensus_8345#1      GGAAA----------ATGGCATCATGGATATTCGTGGCGATTGTGAGCTGTCTGGTAAGT 92
consensus_8345#0      CAAAATGGCCCTTCAATGGCAT--TGGACATTCGTTGCGATCGTGAGCTGCCTAGTCGGC 178
consensus_8345#3      AAAAATGGGCCATCAATGGCAT--TGGACATTTGTTATGATCGTGAGCTGTCTAATCGAC 92
                        ***          *******  **** *** **   *** ******** **  *    

consensus_8345#2      GGACTGCA-GGCTCAAATCAACTACTGTAGCACTAGCTA-----CTGCCGGAACGGTCGT 129
consensus_8345#4      GACTGGCAAGGCTCAAATCAACTACTGTAGCACTAGCTAAACTTTGGCCGGAACGGTCGT 113
consensus_8345#1      GGACTGCA-GGCTCAAATCAACTACTGTAGCACTAGCTA-----CTGCCGGAACGGTCGT 146
consensus_8345#0      GTACTGCA-AGCCCAAACTGACTACTGTGCCAATAGCAA-----CTGCCGGAACGGTCGA 232
consensus_8345#3      GTACTGCA-AGCTCAAACTGACTACTGTGCCAATAGCAA-----CTGC-GGAACGGTCGA 145
                      *    ***  ** ****   ********  ** **** *       ** ********** 

consensus_8345#2      CAGAACGTTGGTTGC-----AATCCTCCAGGCATCCCGGGAGGACCGGCCTGCGCTGGGT 184
consensus_8345#4      CAGAACGTTGGTTTNGGGCAAATCCTCCAGGCATCCCGGGAGGAC-GGCCTGCGCTGGGT 172
consensus_8345#1      CAGAACGTTGGTTGC-----AATCCTCCAGGCATCCCGGGAGGACCGGCCTGCGCTGGGT 201
consensus_8345#0      CCAAACGTTGGTTGC-----AATCCCCCCGCCAGTCCGGGCGGACCGGCCTGCGCTGGTC 287
consensus_8345#3      CA-AACGTTGGTTGC-----AATCCCCCCG-CAGTCCGGGCGGAC--GGCTGCGCTGGTC 196
                      *  **********       ***** ** * **  ***** ****  * *********  

consensus_8345#2      TGAAACCCATGG-TTATAACGATCAACTCTACGCTACAAACGTTGA-TCC--TTTCCGAG 240
consensus_8345#4      TGAAACCCATGGGTTATAACGATCAACTCTACGCTACAAACGTTGAGTCC--TTTCCGAG 230
consensus_8345#1      TGAAACCCATGG-TTATAACGATCAACTCTACGCTACAAACGTTGA-TCC--TTTCCGAG 257
consensus_8345#0      TGAATCCAGAGG-TTAAAACGTTCAGCCCTGAAGAACAAACGTTGA-TCC--TTTCCGAG 343
consensus_8345#3      TGAATCCAGAGG-TTAAAACGTTCAGCCCTGAAGAACAAACGTTTGATCCCTTTTCCGAG 255
                      **** **   ** *** **** *** * **     *********   ***  ********

consensus_8345#2      -CACAA-TACGCGCCGA-TCGCAACTAGC--TCTAGG----TCAACTGAAACCGTTCCTG 291
consensus_8345#4      -CACAAATACGCGCCGAATCGCAACTAGCCTTCTAGGGGGTTCAACTGGAA--------- 280
consensus_8345#1      -CACAA-TACGCGCCGA-TCGCAACTAGC--TCTAGG----TCAACTGAAACCGTTCCTG 308
consensus_8345#0      -CACAA-TAAGCGCCGA-TCGCAACTGGC--GCAGGG----TGAACTGAAGCCGTTCCAA 394
consensus_8345#3      GCACAAGTAAA-GCCG---CCCGATTCGC---CAAAC-------CTTGTGGCTGG-CCAA 300
                       ***** **   ****   * * * * **   *             **            

consensus_8345#2      CCGGCCGTTCGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGT--T 349
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      CCGGCCGTTCGTATGCCTACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAAT 368
consensus_8345#0      CCGGCCGTTCGTATGCCCACCCTTACCTGGGACGAGGAACTTGCCAAACAGGCTGGTAAT 454
consensus_8345#3      GGGGTTGAAACCTTGGAAAACCCCGGTTGTCCCAAAA----CGCCAA--GGCCCGGTT-T 353
                                                                                  

consensus_8345#2      AATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCATTTATGCGTGG 409
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      AATGCACGCAGCTGCCAGTACCAACATGATAGCTGCCGTAACACGCCCGTTTATGCGTGG 428
consensus_8345#0      AATGCACGCAGCTGTACGTACCAACACGATAGCTGCCGTAACACGCCCGTCTTTGCGTGG 514
consensus_8345#3      CACG---GTTATTGCACCAACCCTTACTCTAGGGGACAGAGGAAACTT-TGCGCAAACAG 409
                                                                                  

consensus_8345#2      GCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATCTGCCGTA 469
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      GCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGACCAATACGATATCGCAGCTA 488
consensus_8345#0      GCTGGACAGAACCTTGCGCTGTCGCAATCTTCCGGCATGAACAAAACGGTATCGGAGGTT 574
consensus_8345#3      GCTGGCCAATTAATTGCACGCAAGC----------------------------------- 434
                                                                                  

consensus_8345#2      ACACGCCCATTTATGCGTGGGCTGGACAAAATATTGCACTGGCGCAGTATTCCCGCATGA 529
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      ATAAGCACCAACAT-CGCTTCCTGGTGGAATGA--GTACAGCTTTACTAAGCAGGAACAA 545
consensus_8345#0      ATAAGCAGCAGCAT-CGCCTCCTGGTGGAGTGA--GCACAACGTTACTAGGGAAGAACAA 631
consensus_8345#3      ------------------------------------------------------------
                                                                                  

consensus_8345#2      CCAATACGATATCGCAGCTAATAAGCTCCAACATC------------------------- 564
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      CTGAACTCCTATC-CATCGAGCAATTCGGGACCTGCCATGGGACACTTCACACAGATGGC 604
consensus_8345#0      CTCAACACCTATC-CATCGAGCTATTCTGGACCTGCCATTGGACATTTCACGCAGATGGC 690
consensus_8345#3      ------------------------------------------------------------
                                                                                  

consensus_8345#2      ------------------------------------------------------------
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      AAGCGACCAGANCG-CAAGATTGGGTGTGCCATGCAGAATTGNGTGAGTGGCAACTGGCA 663
consensus_8345#0      CAGTGATCAGAGCGACAAAATAGGATGTGCCATGCAGAAATGGGTGAGTGACGACTGGCT 750
consensus_8345#3      ------------------------------------------------------------
                                                                                  

consensus_8345#2      ------------------------------------------------------------
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      GGACGTACTACTTCGCGTGTAACTATGCTGTCACCAACAATTATTGACCGNNCCAGTCTA 723
consensus_8345#0      G-ACGTACTACTTTGTGTGTAACTATGGCGTCACAAACATTGCTGA--CCGTCCAGTCTA 807
consensus_8345#3      ------------------------------------------------------------
                                                                                  

consensus_8345#2      ------------------------------------------------------------
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      CAACAGCTGGACGCGGTNTGCTTATCGAAAATGTACTACGGGTCGCAATCCAACGNCTGC 783
consensus_8345#0      CAA-----AGCTGGAGCAGTTGCTTCCAAAATGTACTACCGGGCGCAATCCAACGCTG-- 860
consensus_8345#3      ------------------------------------------------------------
                                                                                  

consensus_8345#2      ------------------------------------------------------------
consensus_8345#4      ------------------------------------------------------------
consensus_8345#1      CTTGGACTGTGCTCAGTATCAGAAACTATCAAACCTGTTCCAAACTAATTTAATGCAGCA 843
consensus_8345#0      CCTGGGCTATGTTCAGAATCGGAAACTATCAACCCTGTTCCAAACGAACCTAAAGAACCA 920
consensus_8345#3      ------------------------------------------------------------
                                                                                  

consensus_8345#2      ----------------------------------------
consensus_8345#4      ----------------------------------------
consensus_8345#1      AAATAAAGCAATCCGATGATATGAAATGTCAAAAAAAAAA 883
consensus_8345#0      AAATAAAGCTATTCGATGA--------------------- 939
consensus_8345#3      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)