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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1364 fasta sequence
[CCGGTTGCAGACCGCGCCAGCATTCGCGTTAGTTGCAGTTTGTGCGTTCACGGGGCAAACGGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGCTGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGTTGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGCGGTAGTGGGTTTGTGGGCAAGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGTTAATCCTTCGACGCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCAGTGTTTGTCAACTACGAAAAAGATCCTCAGCTGTACCTGTCCAAGATTCGGCTCATCGAAGGTGACATCAGTGAGGTTGGAGTGGGCATTTCGAACGATGATCTCGCGTACATATACGAGCGGACGAACATCATCGTGCACGCTGCGGCTGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGATACAAACGAATGTGCGCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAAT-CAA-AGCGT-CGGAAAGCGAGAACGATGCGGACGTGT-TTGAGCAGCTGT-CGAAGAAGTTGATCGAACCGTGGCCCAACACG-TACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG-ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT-TTAA-CGGCGT-AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA-TATTTCACATCCACATGGACTACAAGGCG-AGCA-TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC-GGTGAGCTGGCGCGAAACGCAGCACCA-GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC]
[+] EMBL BM596669 [CCGGTTGCAGACCGCGCCAGCATTCGCGTTAGTTGCAGTTTGTGCGTTCACGGGGCAAACGGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGCTGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGTTGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGCGGTAGTGGGTTTGTGGGCAAGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGTTAATCCTTCGACGCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCAGTGTTTGTCAACTACGAAAAAGATCCTCAGCTGTACCTGTCCAAGATTCGGCTCATCGAAGGTGACATCAGTGAGGTTGGAGTGGGCATTTCGAACGATGATCTCGCGTACATATACGAGCGGACGAACATCATCGTGCACGCTGCGGCTGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGATACAAACGAATGTGCGCGGAACGCAGGAGATGTTGAAGATAGCCGA ]
[+] EMBL BM634858 [ ccgGCAGACCGCGCCAGCGATCGCGTTAGTTGCAGTTTGTGTGTCCACGGGGCAAACGGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGCTGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGTTGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGTGGTAGTGGGTTTGTGGGCAAGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGCTGATCCTTCGACGCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCGGTGTTTGTCAACTACGA ]
[+] EMBL BX604938 [ CATCAGTGAGGGTGGAGTGGGCATCACGAACGATGATCTCGCGTACATAGACGAGCGGACGAACATCATCGTGCACGCTGCGGCAGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGATACAAACGAATGTGCGCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAAT CAA AGCGT CGGAAAGCGAGA ]
[+] EMBL BX602454 [ CCACCACTGGATCCGAGCGTACTAAT CAA AGCGT CGGAAAGCGAGAACGATGCGGACGTGT TTGAGCAGCTGT CGAAAAAGTTGATCGAACCGTGGCCCAACACG TACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAA CGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG AGCA TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC]
[+] EMBL BX624289 [ gacgtnnCTAATGCAA AGCGTGCGGAAAGCGAGAACGATGCGGACGTGTGTTGAGCAGCTGTNCGAAGAAGTTGATCGAACCGTGGCCCAACACGNNACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCGAATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAA CGGCGTNAGTGTGTGGCGCAGCAACCGGCGTCCTGCGCANTATNTCACATCCACATGGACTACAAGGCGAAGCATTCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGANCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTNCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAA ]
[+] EMBL BX619369 [ nnAAT CAAGAGCGT CGGAAAGCGAGAACGATGCGGACGTGT TTGAGCAGCTGT CGAAGAAGTTGATCGAACCGTGGCCCAACACG TACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTTNTTAA CGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG AGCA TCGTGNNGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGNNATCGCGANGANGACAACGTGTACAACTGCACCCCGGACGACAATCCGGGTGAGCTGGCGCGNNACGCAGCACCAGGCTG ]
[+] EMBL AL934993 [ CTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAACCGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG A ]
[+] EMBL BX607524 [ GAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAA CGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG AGCA TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC]
[+] EMBL BX623455 [ CTACAAGGCG AGCA TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC]
consensusID : consensus_8348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[CCCCGCAGGTTAGAATCGTTGAAGGAGTCGATACAAACGAATGTGCTNTCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGAGAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCCAACACGTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCGATCATTACAACACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTTTCTAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGCGCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTNAATTCAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGGCGAGGACGGACAACGTGTACNACCTTGCACCACGGACGACAAATCCGGTGAGCTGG]
[+] EMBL AL695505 [CCCCGCAGGTTAGAATCGTTGAAGGAGTCGATACAAACGAATGTGCTNTCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGAGAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCCAACACGTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCGATCATTACAACACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTTTCTAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGCGCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTNAATTCAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGGCGAGGACGGACAACGTGTACNACCTTGCACCACGGACGACAAATCCGGTGAGCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8348#0 CCGGTTGCAGACCGCGCCAGCATTCGCGTTAGTTGCAGTTTGTGCGTTCACGGGGCAAAC 60
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGC 120
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGT 180
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGCGGTAGTGGGTTTGTGGGCA 240
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 AGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGTTAATCCTTCGAC 300
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCAGTGT 360
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TTGTCAACTACGAAAAAGATCCTCAGCTGTACCTGTCCAAGATTCGGCTCATCGAAGGTG 420
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 ACATCAGTGAGGTTGGAGTGGGCATTTCGAACGATGATCTCGCGTACATATACGAGCGGA 480
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 CGAACATCATCGTGCACGCTGCGGCTGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGA 540
consensus_8348#1 ---------------------------CCCCGCAGGTTA--GAATCGTTGAAGGAGTCGA 31
** * ** *******************
consensus_8348#0 TACAAACGAATGTGCGC--GGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCA 598
consensus_8348#1 TACAAACGAATGTGCTNTCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCA 91
*************** *****************************************
consensus_8348#0 GCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGA 658
consensus_8348#1 GCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGA 151
************************************************************
consensus_8348#0 GGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGA 718
consensus_8348#1 GGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGA 211
************************************************************
consensus_8348#0 GAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCCCAACAC 778
consensus_8348#1 GAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCC-AACAC 270
****************************************************** *****
consensus_8348#0 GTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCC 838
consensus_8348#1 GTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCC 330
************************************************************
consensus_8348#0 GGTAGCGATCATCAGACCTTCGATCATTACAACCACCATGGAAGATCCAATCGCTGGCTG 898
consensus_8348#1 GGTAGCGATCATCAGACCTTCGATCATTACAAC-ACCATGGAAGATCCAATCGCTGGCTG 389
********************************* **************************
consensus_8348#0 GACGGACAATCTGTACGGTTT-TAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGC 957
consensus_8348#1 GACGGACAATCTGTACGGTTTCTAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGC 449
********************* **************************************
consensus_8348#0 GCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTAA--T 1015
consensus_8348#1 GCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTNAATT 509
******************************************************* * *
consensus_8348#0 TAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCG-CGAGGA-GGACAACGTG 1073
consensus_8348#1 CAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGGCGAGGACGGACAACGTG 569
***************************************** ****** **********
consensus_8348#0 TACAAC--TGCACCACGGACGACAA-TCCGGTGAGCTGGCGCGAAACGCAGCACCAGCTG 1130
consensus_8348#1 TACNACCTTGCACCACGGACGACAAATCCGGTGAGCTGG--------------------- 608
*** ** ***************** *************
consensus_8348#0 GAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACG 1190
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 ACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTG 1250
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGG 1310
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 AAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC 1364
consensus_8348#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||