These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1364 fasta sequence [CCGGTTGCAGACCGCGCCAGCATTCGCGTTAGTTGCAGTTTGTGCGTTCACGGGGCAAACGGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGCTGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGTTGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGCGGTAGTGGGTTTGTGGGCAAGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGTTAATCCTTCGACGCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCAGTGTTTGTCAACTACGAAAAAGATCCTCAGCTGTACCTGTCCAAGATTCGGCTCATCGAAGGTGACATCAGTGAGGTTGGAGTGGGCATTTCGAACGATGATCTCGCGTACATATACGAGCGGACGAACATCATCGTGCACGCTGCGGCTGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGATACAAACGAATGTGCGCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAAT-CAA-AGCGT-CGGAAAGCGAGAACGATGCGGACGTGT-TTGAGCAGCTGT-CGAAGAAGTTGATCGAACCGTGGCCCAACACG-TACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG-ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT-TTAA-CGGCGT-AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA-TATTTCACATCCACATGGACTACAAGGCG-AGCA-TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC-GGTGAGCTGGCGCGAAACGCAGCACCA-GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC] [+] EMBL BM596669 [CCGGTTGCAGACCGCGCCAGCATTCGCGTTAGTTGCAGTTTGTGCGTTCACGGGGCAAACGGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGCTGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGTTGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGCGGTAGTGGGTTTGTGGGCAAGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGTTAATCCTTCGACGCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCAGTGTTTGTCAACTACGAAAAAGATCCTCAGCTGTACCTGTCCAAGATTCGGCTCATCGAAGGTGACATCAGTGAGGTTGGAGTGGGCATTTCGAACGATGATCTCGCGTACATATACGAGCGGACGAACATCATCGTGCACGCTGCGGCTGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGATACAAACGAATGTGCGCGGAACGCAGGAGATGTTGAAGATAGCCGA ] [+] EMBL BM634858 [ ccgGCAGACCGCGCCAGCGATCGCGTTAGTTGCAGTTTGTGTGTCCACGGGGCAAACGGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGCTGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGTTGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGTGGTAGTGGGTTTGTGGGCAAGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGCTGATCCTTCGACGCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCGGTGTTTGTCAACTACGA ] [+] EMBL BX604938 [ CATCAGTGAGGGTGGAGTGGGCATCACGAACGATGATCTCGCGTACATAGACGAGCGGACGAACATCATCGTGCACGCTGCGGCAGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGATACAAACGAATGTGCGCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAAT CAA AGCGT CGGAAAGCGAGA ] [+] EMBL BX602454 [ CCACCACTGGATCCGAGCGTACTAAT CAA AGCGT CGGAAAGCGAGAACGATGCGGACGTGT TTGAGCAGCTGT CGAAAAAGTTGATCGAACCGTGGCCCAACACG TACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAA CGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG AGCA TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC] [+] EMBL BX624289 [ gacgtnnCTAATGCAA AGCGTGCGGAAAGCGAGAACGATGCGGACGTGTGTTGAGCAGCTGTNCGAAGAAGTTGATCGAACCGTGGCCCAACACGNNACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCGAATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAA CGGCGTNAGTGTGTGGCGCAGCAACCGGCGTCCTGCGCANTATNTCACATCCACATGGACTACAAGGCGAAGCATTCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGANCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTNCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAA ] [+] EMBL BX619369 [ nnAAT CAAGAGCGT CGGAAAGCGAGAACGATGCGGACGTGT TTGAGCAGCTGT CGAAGAAGTTGATCGAACCGTGGCCCAACACG TACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTTNTTAA CGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG AGCA TCGTGNNGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGNNATCGCGANGANGACAACGTGTACAACTGCACCCCGGACGACAATCCGGGTGAGCTGGCGCGNNACGCAGCACCAGGCTG ] [+] EMBL AL934993 [ CTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAACCGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG A ] [+] EMBL BX607524 [ GAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCG ATCATTACAACCACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTT TTAA CGGCGT AGTGTGTGGCGCAGCAACCGGCGTCCTGCGCA TATTTCACATCCACATGGACTACAAGGCG AGCA TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC] [+] EMBL BX623455 [ CTACAAGGCG AGCA TCGTGCCGGCGGACACGGTAATTAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGCGAGGAGGACAACGTGTACAACTGCACCACGGACGACAATCC GGTGAGCTGGCGCGAAACGCAGCACCA GCTGGAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACGACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTGTTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGGAAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC] consensusID : consensus_8348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCCCGCAGGTTAGAATCGTTGAAGGAGTCGATACAAACGAATGTGCTNTCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGAGAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCCAACACGTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCGATCATTACAACACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTTTCTAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGCGCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTNAATTCAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGGCGAGGACGGACAACGTGTACNACCTTGCACCACGGACGACAAATCCGGTGAGCTGG] [+] EMBL AL695505 [CCCCGCAGGTTAGAATCGTTGAAGGAGTCGATACAAACGAATGTGCTNTCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCAGCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGAGGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGAGAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCCAACACGTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCCGGTAGCGATCATCAGACCTTCGATCATTACAACACCATGGAAGATCCAATCGCTGGCTGGACGGACAATCTGTACGGTTTCTAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGCGCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTNAATTCAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGGCGAGGACGGACAACGTGTACNACCTTGCACCACGGACGACAAATCCGGTGAGCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8348#0 CCGGTTGCAGACCGCGCCAGCATTCGCGTTAGTTGCAGTTTGTGCGTTCACGGGGCAAAC 60 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GGTTCCGTATCGATTCCCTTCAGCCAAACGGTCCGTGTGTGTGCCTGTGTGTGCGTCAGC 120 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TGAACAGTGTCGTTCCAGCGATGGTCAGTTTGGAAGAGTTCCGCGCGTACCGATCTCCGT 180 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TGAAAGATTTCTACGACGGAAAGTACGTGCTGCTTACCGGCGGTAGTGGGTTTGTGGGCA 240 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 AGCTGCTGATAGAGAAGCTGATAAAATGCAATGTGGCGGAGATACTGTTAATCCTTCGAC 300 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GCAAGAAAGGCCTTAGCCCTACCGAACGGCTGGAGCAGCTGCTCGGTAAGGAGGCAGTGT 360 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TTGTCAACTACGAAAAAGATCCTCAGCTGTACCTGTCCAAGATTCGGCTCATCGAAGGTG 420 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 ACATCAGTGAGGTTGGAGTGGGCATTTCGAACGATGATCTCGCGTACATATACGAGCGGA 480 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CGAACATCATCGTGCACGCTGCGGCTGATGTGCGGTTTGACGAATCGTTGAAGGAGTCGA 540 consensus_8348#1 ---------------------------CCCCGCAGGTTA--GAATCGTTGAAGGAGTCGA 31 ** * ** ******************* consensus_8348#0 TACAAACGAATGTGCGC--GGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCA 598 consensus_8348#1 TACAAACGAATGTGCTNTCGGAACGCAGGAGATGTTGAAGATAGCCGAAAACTGCCGCCA 91 *************** ***************************************** consensus_8348#0 GCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGA 658 consensus_8348#1 GCTGGAGATTTTCACCTACATCTCGACGGCTTTCTCACACTGCGTGCTGGGCGTCATCGA 151 ************************************************************ consensus_8348#0 GGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGA 718 consensus_8348#1 GGAGAAGTTCTACGATCCACCACTGGATCCGAGCGTACTAATCAAAGCGTCGGAAAGCGA 211 ************************************************************ consensus_8348#0 GAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCCCAACAC 778 consensus_8348#1 GAACGATGCGGACGTGTTTGAGCAGCTGTCGAAGAAGTTGATCGAACCGTGGCC-AACAC 270 ****************************************************** ***** consensus_8348#0 GTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCC 838 consensus_8348#1 GTACGCCTTCACCAAATCGCTCTCGGAGGAAATGGTTCGGCGCTACAAAGCGAAGCTGCC 330 ************************************************************ consensus_8348#0 GGTAGCGATCATCAGACCTTCGATCATTACAACCACCATGGAAGATCCAATCGCTGGCTG 898 consensus_8348#1 GGTAGCGATCATCAGACCTTCGATCATTACAAC-ACCATGGAAGATCCAATCGCTGGCTG 389 ********************************* ************************** consensus_8348#0 GACGGACAATCTGTACGGTTT-TAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGC 957 consensus_8348#1 GACGGACAATCTGTACGGTTTCTAACGGCGTAGTGTGTGGCGCAGCAACCGGCGTCCTGC 449 ********************* ************************************** consensus_8348#0 GCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTAA--T 1015 consensus_8348#1 GCATATTTCACATCCACATGGACTACAAGGCGAGCATCGTGCCGGCGGACACGGTNAATT 509 ******************************************************* * * consensus_8348#0 TAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCG-CGAGGA-GGACAACGTG 1073 consensus_8348#1 CAACGCGACGCTCGCCGTCACCTGGTACGCGGCGAGCCATCGGCGAGGACGGACAACGTG 569 ***************************************** ****** ********** consensus_8348#0 TACAAC--TGCACCACGGACGACAA-TCCGGTGAGCTGGCGCGAAACGCAGCACCAGCTG 1130 consensus_8348#1 TACNACCTTGCACCACGGACGACAAATCCGGTGAGCTGG--------------------- 608 *** ** ***************** ************* consensus_8348#0 GAGCACTGGAAGGATCGCATCCCGTTCGACAAGTCGCTGTGGATAACGACGTACAACACG 1190 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 ACCCGCTTCAAGCTGGTAGCGGACGTGCTGTCCATCCTGTACCACGTCCTGCCGGCGCTG 1250 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TTCTTCGACGCCCTGCTGCAGCTCGGTGGTCAGAAGCCGCGCGTGCTAAAGCTCTACCGG 1310 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 AAGGTGCATCGCTTCTCCGCCGTGCTGCGCTTCTTCACCAACAACCAGTGGTGC 1364 consensus_8348#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||