These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 540 fasta sequence [AAAACTTGCATCAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGCCAAAAAAAAAAACCNAANNAAAAAAAAAACTTGTNGGCCCCCCCGGCCNAGTNACCTTTAACTCNACCANNCNTTTGCNTGGGGCCCAAATNNANGCTCNCTGGGCCATTNNCC] [+] EMBL AGA130950 [AAAACTTGCATCTACCAGTACAAGGATGAAGTCTATGCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCACGTCCATCTTGCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATAg ] [+] EMBL AGA17689 [AAAACTTGCATCTACCAGTACAAGGATGAAGTCTATGCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCACGTCCATCTTGCCCTTCTTCGGCAATGGGCAGGGTG ] [+] EMBL CF541582 [ AAACTTACATCAACCAGTACAAGGATGAAGTCTATGTTGGTGGCCTTTGCCACCCTGTCGGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGCACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGGTCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGCTAAAAAAAAAAACCNAANNAAAAAAAAAACTTGTNGGCCCCCCCGGCCNAGTNACCTTTAACTCNACCANNCNTTTGCNTGGGGCCCAAATNNANGCTCNCTGGGCCATTNNCC] [+] EMBL CF541965 [ ACTTACATCAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCANNGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGCGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAACAAAAAAAAAA ] [+] EMBL BM626702 [ ccgAACCAGTACAAGGATGAAGTCTATCCTGGTGACCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGACCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGTGAAAGCAATGGTACGAGCATTCCGGGCGTGCCGGATTTCGGCAGTTTCCTGCCGAACCTTGGTAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCATTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGTGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGCGTGGTGATGCGTTGCGATATGAACGAAAGTTAATAA ] [+] EMBL BM644298 [ ccgAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGtc ] [+] EMBL BM600550 [ ccgCCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGtc ] [+] EMBL CF541650 [ CAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGCACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCGTTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGCCAAAAAAAAAA ] [+] EMBL CF541550 [ ATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGTCAAAAAAAAAA ] consensusID : consensus_8372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [ATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGTCAAATTGGTATGGTCAGGTATGGCTGTATTGCATCAGAAAAAAAAAA] [+] EMBL CF541601 [ATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGTCAAATTGGTATGGTCAGGTATGGCTGTATTGCATCAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8372#0 AAAACTTGCATCAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTC 60 consensus_8372#1 ------------------------------------------------------------ consensus_8372#0 AGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGG 120 consensus_8372#1 ------------------------------------------------------------ consensus_8372#0 TTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAG 180 consensus_8372#1 --------------------------------------------------ATGGTACGAG 10 ********** consensus_8372#0 CATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACA 240 consensus_8372#1 CATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACA 70 *************************************** ******************** consensus_8372#0 GTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTAC 300 consensus_8372#1 GTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTAC 130 ************************************************************ consensus_8372#0 CGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTT 360 consensus_8372#1 CGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTT 190 ********************************* ************************** consensus_8372#0 CTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTAT 420 consensus_8372#1 CTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTAT 250 ******************* **************************************** consensus_8372#0 GGCAGCCAAAAAAAAAAACCNAANNAAAAAAAAAACTTGTNGGCCCCCCCGGCCNAGTNA 480 consensus_8372#1 GGCAGTCAAATTGGTATGGTCAGGTATGG-------CTGTATTGCATCAGAAAAAAAAAA 303 ***** **** * * * *** * * * * consensus_8372#0 CCTTTAACTCNACCANNCNTTTGCNTGGGGCCCAAATNNANGCTCNCTGGGCCATTNNCC 540 consensus_8372#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||