cluster # 8372

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8372 cluster # 8372 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8372#0 length = 540 sequences # 9

consensus_8372#1 length = 303 sequences # 1

consensusID : consensus_8372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 540
fasta sequence

                              [AAAACTTGCATCAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGCCAAAAAAAAAAACCNAANNAAAAAAAAAACTTGTNGGCCCCCCCGGCCNAGTNACCTTTAACTCNACCANNCNTTTGCNTGGGGCCCAAATNNANGCTCNCTGGGCCATTNNCC]

[+] EMBL AGA130950            [AAAACTTGCATCTACCAGTACAAGGATGAAGTCTATGCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCACGTCCATCTTGCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATAg                                                                                                                           ]
[+] EMBL AGA17689             [AAAACTTGCATCTACCAGTACAAGGATGAAGTCTATGCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCACGTCCATCTTGCCCTTCTTCGGCAATGGGCAGGGTG                                                                                                                                                                                                 ]
[+] EMBL CF541582             [ AAACTTACATCAACCAGTACAAGGATGAAGTCTATGTTGGTGGCCTTTGCCACCCTGTCGGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGCACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGGTCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGCTAAAAAAAAAAACCNAANNAAAAAAAAAACTTGTNGGCCCCCCCGGCCNAGTNACCTTTAACTCNACCANNCNTTTGCNTGGGGCCCAAATNNANGCTCNCTGGGCCATTNNCC]
[+] EMBL CF541965             [   ACTTACATCAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCANNGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGCGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAACAAAAAAAAAA                                                                                                        ]
[+] EMBL BM626702             [         ccgAACCAGTACAAGGATGAAGTCTATCCTGGTGACCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGACCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGTGAAAGCAATGGTACGAGCATTCCGGGCGTGCCGGATTTCGGCAGTTTCCTGCCGAACCTTGGTAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCATTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGTGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGCGTGGTGATGCGTTGCGATATGAACGAAAGTTAATAA                                                                                                                                   ]
[+] EMBL BM644298             [         ccgAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGtc                                                                                                                 ]
[+] EMBL BM600550             [           ccgCCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTCAGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAGCTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGtc                                                                                                                 ]
[+] EMBL CF541650             [                                                                                             CAACTTCAACTACGGTGGCGGTGGCGGTTACTTCATCAACGGCACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCGTTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGCCAAAAAAAAAA                                                                                                       ]
[+] EMBL CF541550             [                                                                                                                                                                          ATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGTCAAAAAAAAAA                                                                                                       ]




>consensus_8372#0
AAAACTTGCATCAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTC
AGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGG
TTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAG
CATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACA
GTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTAC
CGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTT
CTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTAT
GGCAGCCAAAAAAAAAAACCNAANNAAAAAAAAAACTTGTNGGCCCCCCCGGCCNAGTNA
CCTTTAACTCNACCANNCNTTTGCNTGGGGCCCAAATNNANGCTCNCTGGGCCATTNNCC

consensusID : consensus_8372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [ATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGTCAAATTGGTATGGTCAGGTATGGCTGTATTGCATCAGAAAAAAAAAA]

[+] EMBL CF541601             [ATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTATGGCAGTCAAATTGGTATGGTCAGGTATGGCTGTATTGCATCAGAAAAAAAAAA]




>consensus_8372#1
ATGGTACGAGCATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATC
TGACGCAACAGTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGA
CGAACTTTACCGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAG
GTTTTCCGTTCTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAA
AGTATATTATGGCAGTCAAATTGGTATGGTCAGGTATGGCTGTATTGCATCAGAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8372#0      AAAACTTGCATCAACCAGTACAAGGATGAAGTCTATCCTGGTGGCCTTTGCCACCCTGTC 60
consensus_8372#1      ------------------------------------------------------------
                                                                                  

consensus_8372#0      AGTCGCGCTGGTGGTGGTCGTGGCCATTCCGGCCAACTTCAACTACGGTGGCGGTGGCGG 120
consensus_8372#1      ------------------------------------------------------------
                                                                                  

consensus_8372#0      TTACTTCATCAACGGAACGGGCCAAAGCTTCAACTTTTCCGGCGAAAGCAATGGTACGAG 180
consensus_8372#1      --------------------------------------------------ATGGTACGAG 10
                                                                        **********

consensus_8372#0      CATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAACCTTGGCAATCTGACGCAACA 240
consensus_8372#1      CATTCCGGGCCTGCCGGATTTCGGCAGCTTCCTGCCGAATCTTGGCAATCTGACGCAACA 70
                      *************************************** ********************

consensus_8372#0      GTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTAC 300
consensus_8372#1      GTTCGGTGGATCGTCGGGCGCGTTCCCGCAGTTTAGCATTCCATCGTGGACGAACTTTAC 130
                      ************************************************************

consensus_8372#0      CGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGCAATGGGCAGGGTGGAGGTTTTCCGTT 360
consensus_8372#1      CGATGCGTTCTCGTCCATCTTTCCCTTCTTCGGTAATGGGCAGGGTGGAGGTTTTCCGTT 190
                      ********************************* **************************

consensus_8372#0      CTTCGGATGAAGTGTGGTGGTGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTAT 420
consensus_8372#1      CTTCGGATGAAGTGTGGTGATGCGATGCGATATGAACGAAAGTTAATAAAAGTATATTAT 250
                      ******************* ****************************************

consensus_8372#0      GGCAGCCAAAAAAAAAAACCNAANNAAAAAAAAAACTTGTNGGCCCCCCCGGCCNAGTNA 480
consensus_8372#1      GGCAGTCAAATTGGTATGGTCAGGTATGG-------CTGTATTGCATCAGAAAAAAAAAA 303
                      ***** ****     *     *   *           ***    *  *       *   *

consensus_8372#0      CCTTTAACTCNACCANNCNTTTGCNTGGGGCCCAAATNNANGCTCNCTGGGCCATTNNCC 540
consensus_8372#1      ------------------------------------------------------------